{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":435150463,"defaultBranch":"master","name":"SECSE","ownerLogin":"KeenThera","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-12-05T11:42:47.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/95197214?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1704875351.0","currentOid":""},"activityList":{"items":[{"before":"d0e5c8d2ca8f53a5dce033c95e3f294deb7560ef","after":"bdffc56aa5a740d1a49bae19e8f99f5b02f15979","ref":"refs/heads/master","pushedAt":"2024-05-03T21:39:22.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"add excel2db script\n\nUser can use this script to convert excel file rules to sqlite db or json file.","shortMessageHtmlLink":"add excel2db script"}},{"before":"4b3a9d6b3409e7ab6861243e2647d272a66a8f79","after":"d0e5c8d2ca8f53a5dce033c95e3f294deb7560ef","ref":"refs/heads/master","pushedAt":"2024-04-09T08:51:29.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"Select poses by ligand efficiency and map generation script for AutodockGPU (#14)\n\n* Add files via upload\r\n\r\nThis script will calculate ligand efficiency of a user specified property in a SDF file, bin the list by the property, select the rows with highest LE and save into a new SDF file\r\n\r\n* Add files via upload\r\n\r\nThis script is created for AutoDock Grid generation\r\n\r\n* keep hydrogen atoms in input SDF file\r\n\r\n* provide more help information\r\n\r\n- Create a example gpf file if no parameter is provided\r\n- Check the availability of autogrid","shortMessageHtmlLink":"Select poses by ligand efficiency and map generation script for Autod…"}},{"before":"d4bd30b265a68e8976911fb6fab922f5eafce94f","after":"4b3a9d6b3409e7ab6861243e2647d272a66a8f79","ref":"refs/heads/master","pushedAt":"2024-03-18T22:20:40.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"fix filter_sdf_by_titles.pl\n\nbug fix. To make the first molecule structure in right format. Add a blank line to prevent the first \"$$$$\" from being on the same line as the second molecule","shortMessageHtmlLink":"fix filter_sdf_by_titles.pl"}},{"before":"1b9703fc38666f2c7ec93ed67c4ded378cfe89ad","after":"d4bd30b265a68e8976911fb6fab922f5eafce94f","ref":"refs/heads/master","pushedAt":"2024-03-12T09:18:41.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"feat:add unidock dock engine (#12)\n\n* feat:add unidock dock engine\r\n\r\n* fix:unidock result files name","shortMessageHtmlLink":"feat:add unidock dock engine (#12)"}},{"before":"92ee95e01df3f21678dfd72c2112f0e8c1ba2abf","after":"1b9703fc38666f2c7ec93ed67c4ded378cfe89ad","ref":"refs/heads/master","pushedAt":"2024-01-11T15:55:00.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"Update filter.py\n\nAvoid reloading input_smiles in charge_filter","shortMessageHtmlLink":"Update filter.py"}},{"before":"d4ebe38f13537f78b2babb388d544050f7c3a2d5","after":"ea0494d0c4570d193c45ee484f26f46f7eb2f9fb","ref":"refs/heads/shienliu-patch-3","pushedAt":"2024-01-11T01:58:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"Update filter.py\n\nAvoid reloading input_smiles in charge_filter","shortMessageHtmlLink":"Update filter.py"}},{"before":null,"after":"d4ebe38f13537f78b2babb388d544050f7c3a2d5","ref":"refs/heads/shienliu-patch-3","pushedAt":"2024-01-10T08:29:11.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"Update filter.py\n\nWe've updated our software to better handle issues when processing molecules with OpenBabel. Previously, if OpenBabel returned a molecule as NoneType due to errors in hydrogen addition at certain pH levels, our Python iterator would stop. Now, we've added error handling to skip over these problematic molecules and continue processing. This improvement ensures smoother and more reliable performance, especially when dealing with large datasets.","shortMessageHtmlLink":"Update filter.py"}},{"before":"ddeb68fb3fd07de79ebc2c460914d4be3e9ddb98","after":"92ee95e01df3f21678dfd72c2112f0e8c1ba2abf","ref":"refs/heads/master","pushedAt":"2023-12-28T23:29:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"custom filter update","shortMessageHtmlLink":"custom filter update"}},{"before":"38226666f0d87a1274490435a59fc422e17caef2","after":"ddeb68fb3fd07de79ebc2c460914d4be3e9ddb98","ref":"refs/heads/master","pushedAt":"2023-12-28T21:36:42.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"add custom filter","shortMessageHtmlLink":"add custom filter"}},{"before":"38226666f0d87a1274490435a59fc422e17caef2","after":"dc8be3a491c2cd65feb709cfa984e50df225bd8f","ref":"refs/heads/custom_filter","pushedAt":"2023-12-04T07:54:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"add custom filter","shortMessageHtmlLink":"add custom filter"}},{"before":null,"after":"38226666f0d87a1274490435a59fc422e17caef2","ref":"refs/heads/custom_filter","pushedAt":"2023-12-04T07:51:02.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"secse v1.3 update","shortMessageHtmlLink":"secse v1.3 update"}},{"before":"5fe0c99893f47aa68712807fe9643f5fadddc206","after":"f2441af14ad44d2e941bca30692804a8518980e6","ref":"refs/heads/binding","pushedAt":"2023-08-10T09:25:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"4eb133ab2279bd590479e3d4429fc2f051033663","after":"5fe0c99893f47aa68712807fe9643f5fadddc206","ref":"refs/heads/binding","pushedAt":"2023-08-10T09:24:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"ac263534c399ee9f96cd7c2ea25ea01fd6460946","after":"4eb133ab2279bd590479e3d4429fc2f051033663","ref":"refs/heads/binding","pushedAt":"2023-08-10T09:04:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"Delete .idea directory","shortMessageHtmlLink":"Delete .idea directory"}},{"before":null,"after":"ac263534c399ee9f96cd7c2ea25ea01fd6460946","ref":"refs/heads/binding","pushedAt":"2023-08-10T09:01:30.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"hydrogen bond filter\nburied surface area (BSA) filter\nadditional modifications","shortMessageHtmlLink":"hydrogen bond filter"}},{"before":"c092526d0aaa4740d5c1e0a6d9981d472985a721","after":"38226666f0d87a1274490435a59fc422e17caef2","ref":"refs/heads/master","pushedAt":"2023-06-13T09:01:05.337Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"secse v1.3 update","shortMessageHtmlLink":"secse v1.3 update"}},{"before":"26c36e851ca417fb7b995924dfd5a08c72888741","after":"c092526d0aaa4740d5c1e0a6d9981d472985a721","ref":"refs/heads/master","pushedAt":"2023-06-13T04:21:19.059Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"secse v1.3 update","shortMessageHtmlLink":"secse v1.3 update"}},{"before":"4f58b897d1d14c0669e597f4b2a197f2d6f1e804","after":"26c36e851ca417fb7b995924dfd5a08c72888741","ref":"refs/heads/master","pushedAt":"2023-06-13T03:28:07.028Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"secse v1.3 update","shortMessageHtmlLink":"secse v1.3 update"}},{"before":"4c34e4ce10706d2d068d6381e9cf96ede023bd76","after":"4f58b897d1d14c0669e597f4b2a197f2d6f1e804","ref":"refs/heads/master","pushedAt":"2023-06-13T02:16:19.575Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"secse v1.3 update","shortMessageHtmlLink":"secse v1.3 update"}},{"before":"f7c5c2c7ccfc5e5361f04ca196c2c7ee8ba8ccfb","after":"4c34e4ce10706d2d068d6381e9cf96ede023bd76","ref":"refs/heads/master","pushedAt":"2023-06-12T11:58:22.064Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"secse v1.3 update","shortMessageHtmlLink":"secse v1.3 update"}},{"before":"046199930c6c1b043164133f40fc5dc87c4782bc","after":"f7c5c2c7ccfc5e5361f04ca196c2c7ee8ba8ccfb","ref":"refs/heads/master","pushedAt":"2023-05-21T03:10:27.202Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"fix: find growing path","shortMessageHtmlLink":"fix: find growing path"}},{"before":"58cd01fd35f505ab92cc87c3ae7c560e1dd121af","after":"046199930c6c1b043164133f40fc5dc87c4782bc","ref":"refs/heads/master","pushedAt":"2023-05-19T06:43:02.279Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"fix load customized rule db","shortMessageHtmlLink":"fix load customized rule db"}},{"before":"31cb5392ba8ef49e490e5fb2b06b11ef7747e52f","after":"58cd01fd35f505ab92cc87c3ae7c560e1dd121af","ref":"refs/heads/master","pushedAt":"2023-05-12T07:01:44.944Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"0a9702d1ff02a07c088d1b38d43635929bc04dcf","after":"31cb5392ba8ef49e490e5fb2b06b11ef7747e52f","ref":"refs/heads/master","pushedAt":"2023-05-12T06:56:45.428Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"add QED and SA filter in filter.py","shortMessageHtmlLink":"add QED and SA filter in filter.py"}},{"before":"cf2523bd489b1a8fc163fa0016ce504788ad3d3e","after":"0a9702d1ff02a07c088d1b38d43635929bc04dcf","ref":"refs/heads/master","pushedAt":"2023-05-10T09:09:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"update DL","shortMessageHtmlLink":"update DL"}},{"before":null,"after":"cf2523bd489b1a8fc163fa0016ce504788ad3d3e","ref":"refs/heads/shienliu-patch-2","pushedAt":"2023-05-10T08:21:14.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"cf2523bd489b1a8fc163fa0016ce504788ad3d3e","after":"565939d69e3d2aae407d84250409555312e2be95","ref":"refs/heads/shienliu-patch-2","pushedAt":"2023-05-10T08:21:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"add QED and SA filter in filter.py","shortMessageHtmlLink":"add QED and SA filter in filter.py"}},{"before":"da144c835231f0767b2b4b62727b0fa768f68406","after":"cf2523bd489b1a8fc163fa0016ce504788ad3d3e","ref":"refs/heads/master","pushedAt":"2023-05-10T04:08:44.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"c8bdaa19a6231c0ccc313097ac9f89ffd5896979","after":"da144c835231f0767b2b4b62727b0fa768f68406","ref":"refs/heads/master","pushedAt":"2023-05-10T03:44:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"shienliu","name":"shien liu","path":"/shienliu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95600386?s=80&v=4"},"commit":{"message":"Update ligprep.py","shortMessageHtmlLink":"Update ligprep.py"}},{"before":"bb0888b500cf8aae1d0d84049f16caf236ae945e","after":"c8bdaa19a6231c0ccc313097ac9f89ffd5896979","ref":"refs/heads/master","pushedAt":"2023-05-10T03:19:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChongLu121","name":"Lu Chong","path":"/ChongLu121","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23124635?s=80&v=4"},"commit":{"message":"update filter","shortMessageHtmlLink":"update filter"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEQSHMWAA","startCursor":null,"endCursor":null}},"title":"Activity · KeenThera/SECSE"}