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@heewookl heewookl released this Dec 21, 2017 · 6 commits to master since this release

**** kourami-0.9.6_bin.zip contains pre-compiled jar and does NOT contain source files ****

  • log filename now ends with ".log" extension
  • assembled HLA sequences are outputted to filename ending with ".typed.fa"
  • allele-specific min depth is outputted for each assembled allele (This can be used to get a sense of confidence on the assembled sequences)
Assets 3

@heewookl heewookl released this Nov 5, 2017 · 12 commits to master since this release

-Added support for DRB3 and DRB5 loci
-Fixed ALT filtering routine in alignAndExtract scripts
-Added JDK/JRE version requirement for maven and ant
-Fixed minor bugs (CLI parsing, bubble path pruning)
-Added download_panel.sh to allow automatics downloading and bwa-index of Kourami panel.

Assets 3

@heewookl heewookl released this Oct 6, 2017 · 31 commits to master since this release

-Added support for processing additional HLA loci (optional)
-Added support for preparing a custom DB or other IMGT releases
-Precompiled jar (kourami_v0.9.4_bin.tar.gz) contains all the directory structures included from v0.9.4 and later.

Assets 3
Jul 4, 2017
Kurami 0.9.3

@heewookl heewookl released this May 26, 2017 · 73 commits to master since this release

added preprocessing scripts to generate input bam to Kourami.

Added some input validation.

Assets 3

@kingsfordgroup kingsfordgroup released this May 10, 2017 · 93 commits to master since this release

Kourami version 0.9.1
Assets 2
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