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**** kourami-0.9.6_bin.zip contains pre-compiled jar and does NOT contain source files ****
- log filename now ends with ".log" extension
- assembled HLA sequences are outputted to filename ending with ".typed.fa"
- allele-specific min depth is outputted for each assembled allele (This can be used to get a sense of confidence on the assembled sequences)
-Added support for DRB3 and DRB5 loci
-Fixed ALT filtering routine in alignAndExtract scripts
-Added JDK/JRE version requirement for maven and ant
-Fixed minor bugs (CLI parsing, bubble path pruning)
-Added download_panel.sh to allow automatics downloading and bwa-index of Kourami panel.
-Added support for processing additional HLA loci (optional)
-Added support for preparing a custom DB or other IMGT releases
-Precompiled jar (kourami_v0.9.4_bin.tar.gz) contains all the directory structures included from v0.9.4 and later.