git clone https://github.com/KitwareMedical/2019-ImageXD-Registration-Tutorial cd 2019-ImageXD-Registration-Tutorial python -m pip install -r requirements.txt jupyter notebook
The tutorial consists of lecture segments followed by hands-on exercises. We strongly encourage you to bring a laptop with all required packages installed in order to fully participate.
If you are new to Python, please install the Anaconda distribution for Python version 3 (available on OSX, Linux, and Windows). Everyone else, feel free to use your favorite distribution, but please ensure the requirements below are met:
ITK is an open-source toolkit for multidimensional image analysis. If you are using Anaconda, it is easy to install ITK using the conda-forge repository, through the following command:
$ python -m pip install itk
The lecture material includes Jupyter notebooks. Please follow the Jupyter installation instructions, and ensure you have version 4 or later:
$ jupyter --version 4.4.0
Please also activate Jupyter Widgets:
python -m pip install -q ipywidgets jupyter nbextension enable --py --sys-prefix widgetsnbextension
Download lecture material
- Install Git
- Clone the repository at https://github.com/KitwareMedical/2019-ImageXD-Registration-Tutorial
We may make editorial corrections to the material until the day before
the workshop, so please execute
git pull to update.
Install into an environment
Optionally, create a new conda environment or virtual environment.
Then, install the packages:
$ pip3 install --upgrade --pre --upgrade-strategy eager -r requirements.txt
If you do not have a working setup, please contact the instructors.