diff --git a/6_Extending_the_toolkit.ipynb b/6_Extending_the_Toolkit.ipynb similarity index 94% rename from 6_Extending_the_toolkit.ipynb rename to 6_Extending_the_Toolkit.ipynb index 5e5492b..e47548d 100644 --- a/6_Extending_the_toolkit.ipynb +++ b/6_Extending_the_Toolkit.ipynb @@ -153,7 +153,12 @@ " \n", "\n", "\n", - "http://www.insight-journal.org/browse/publication/985" + "- https://github.com/InsightSoftwareConsortium/ITKTextureFeatures\n", + "- http://www.insight-journal.org/browse/publication/985\n", + "\n", + "```\n", + "python -m pip install itk-texturefeatures\n", + "```" ] }, { @@ -166,14 +171,19 @@ "source": [ "## ITKUltrasound\n", "\n", - "* High performance ultrasound B-Mode implementation based on the Insight Toolkit (ITK).\n", + "* High performance ultrasound image formation and analysis based on the Insight Toolkit (ITK).\n", "* Introduction of an itk::StreamingResampleImageFilter.\n", "
\n", - " \n", + " \n", "
Fig1. Large, scan converted B-Mode image of anechoic spheres in a tissue mimicking ultrasound phantom. The image was processed without swapping to disk.
\n", "
\n", "\n", - "http://www.insight-journal.org/browse/publication/722" + "- https://github.com/KitwareMedical/ITKUltrasound\n", + "- http://www.insight-journal.org/browse/publication/722\n", + "\n", + "```\n", + "python -m pip install itk-ultrasound\n", + "```" ] }, { @@ -189,7 +199,12 @@ "* Multiresolution (MRA) analysis framework using isotropic and steerable wavelets in the frequency domain.\n", "* Provides the backbone for state of the art filters for denoising, feature detection or phase analysis in N-dimension\n", "\n", - "http://www.insight-journal.org/browse/publication/986" + "- https://github.com/InsightSoftwareConsortium/ITKIsotropicWavelets\n", + "- http://www.insight-journal.org/browse/publication/986\n", + "\n", + "```\n", + "python -m pip install itk-isotropicwavelets\n", + "```" ] }, { diff --git a/Dockerfile.local b/Dockerfile.local index d5d2e37..e1ce60e 100644 --- a/Dockerfile.local +++ b/Dockerfile.local @@ -2,12 +2,13 @@ FROM jupyter/scipy-notebook:1fbaef522f17 MAINTAINER Matt McCormick RUN conda install --yes --quiet -c damianavila82 rise -RUN python -m pip install itk +RUN python -m pip install itk itk-ultrasound itk-texturefeatures RUN python -m pip install itkwidgets && \ python -m jupyter nbextension install --py --sys-prefix itkwidgets && \ python -m jupyter nbextension enable --py --sys-prefix itkwidgets RUN mkdir -p $HOME/.jupyter && \ echo "c.NotebookApp.iopub_data_rate_limit=1e22" >> $HOME/.jupyter/jupyter_notebook_config.py +RUN python -m pip install cookiecutter ADD data/kitware-logo-small.png /home/jovyan/.jupyter/custom/logo.png ADD data/jupyter-custom.css /home/jovyan/.jupyter/custom/custom.css