diff --git a/download.yaml b/download.yaml index 72fada83..30f0c712 100644 --- a/download.yaml +++ b/download.yaml @@ -71,7 +71,7 @@ local_name: CORD-19_1_3.zip # SciBite CORD-19 entity co-occurrences v1.0 -#- +# - # url: https://github.com/SciBiteLabs/CORD19/raw/master/sentence-co-occurrence-CORD-19/1.0/cv19_scc.zip # local_name: cv19_scc.zip diff --git a/merge.yaml b/merge.yaml index 8f6969c3..d73bb721 100644 --- a/merge.yaml +++ b/merge.yaml @@ -1,10 +1,10 @@ +--- target: drug-central: type: tsv filename: - data/transformed/drug_central/nodes.tsv - data/transformed/drug_central/edges.tsv - pharmgkb: type: tsv filename: @@ -20,51 +20,41 @@ target: filename: - data/transformed/ttd/nodes.tsv - data/transformed/ttd/edges.tsv - zhou-host-proteins: type: tsv filename: - data/transformed/zhou_host_proteins/nodes.tsv - data/transformed/zhou_host_proteins/edges.tsv - SciBite-CORD-19: type: tsv filename: - data/transformed/SciBite-CORD-19/nodes.tsv - data/transformed/SciBite-CORD-19/edges.tsv - sars-cov-2-gene-annot: type: tsv filename: - data/transformed/sars_cov_2_gene_annot/nodes.tsv - data/transformed/sars_cov_2_gene_annot/edges.tsv - intact: type: tsv filename: - data/transformed/intact/nodes.tsv - data/transformed/intact/edges.tsv - - - gene-ontology: type: tsv filename: - data/transformed/ontologies/go-plus_nodes.tsv - data/transformed/ontologies/go-plus_edges.tsv - mondo-ontology: type: tsv filename: - data/transformed/ontologies/mondo_nodes.tsv - data/transformed/ontologies/mondo_edges.tsv - hp-ontology: type: tsv filename: - data/transformed/ontologies/hp_nodes.tsv - data/transformed/ontologies/hp_edges.tsv - destination: type: tsv filename: merged-kg -