MIRNA-RIP: The miRNA Regulatory Interaction Predictor
MIRNA-RIP is a software package for R (www.r-project.org) to predict miRNAs as regulators of potential target genes using matched gene- and miRNA expression profiles. MIRNARIP implements two model types using Mixed Integer Linear Programming: simple linear regression and piecewise linear regression. In both model types, specific parameters are optimized to estimate the target gene expression using the expression of the corresponding miRNA. Target gene predictions from both models are summarized in a combined model. More information about installation and usage including an example data set can be found in the manual.
MIRNA-RIP R package MIRNA-RIP manual start_MIRNARIP.R
Gene expression data, taken from  miRNA expression data, taken from  miRNA – target gene interactions, taken from  miRNA mature2pre-miRNA_ID mapping, extracted from  miRNA experimental2pre-miRNA_ID mapping, extracted from  miRNA candidates
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