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A collection of scripts and tools for loading, processing, and handling single cell data.
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
Tools for building and manipulating graphs in Python
Archetypal Analysis network (AAnet)
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
PHATE dimensionality reduction method implemented in R
Easily create a beautiful website using Academic and Hugo
Enhancing experimental signals in scRNA-seq data using graph signal processing
Synthesis using Geometrically Aligned Random-walks
New ways of fitting a graph to vector data.
Graph Spectral Regularization for Neural Network Interpretability
Interactive command line docker script for running PHATE
Interactive command line docker script for running MAGIC
Package of Matlab scripts to preprocess CyTOF data