EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
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README.md

EDGE Bioinformatics

This is version 1.5.1 of EDGE Bioinformatics, a product of Los Alamos National Laboratory, Naval Medical Research Center, and the Defense Threat Reduction Agency.

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data. The bioinformatics platform allows users to address a wide range of use cases including assay validation and the characterization of novel biological threats, clinical samples, and complex environmental samples.

To demo EDGE, go to https://bioedge.lanl.gov/ and follow the "GUI" instructions from our documentation, found at https://edge.readthedocs.io. It is also linked at the bottom of the EDGE homepage.

Documentation

ReadTheDocs

PDF

Contact Info

Chien-Chi Lo: chienchi@lanl.gov
Paul Li: po-e@lanl.gov
Joe Anderson (DTRA/NMRC): joseph.j.anderson2.civ@mail.mil Logan Voegtly (HJF/NMRC): logan.j.voegtly.ctr@mail.mil

Citation

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

Po-E Li; Chien-Chi Lo; Joseph J. Anderson; Karen W. Davenport; Kimberly A. Bishop-Lilly; Yan Xu; Sanaa Ahmed; Shihai Feng; Vishwesh P. Mokashi; Patrick S.G. Chain

Nucleic Acids Research 2016;

[doi: 10.1093/nar/gkw1027] (http://nar.oxfordjournals.org/content/early/2016/11/28/nar.gkw1027.abstract?keytype=ref&ijkey=KzcEnQzdYkdjPCU)

Copyright

Los Alamos National Security, LLC (LANS) owns the copyright to EDGE, which it identifies internally as LA-CC-14-007. The license is GPLv3. See LICENSE for the full text.