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README.md

EDGE Bioinformatics

This is version 1.5.1 of EDGE Bioinformatics, a product of Los Alamos National Laboratory, Naval Medical Research Center, and the Defense Threat Reduction Agency.

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data. The bioinformatics platform allows users to address a wide range of use cases including assay validation and the characterization of novel biological threats, clinical samples, and complex environmental samples.

To demo EDGE, go to https://bioedge.lanl.gov/ and follow the "GUI" instructions from our documentation, found at https://edge.readthedocs.io. It is also linked at the bottom of the EDGE homepage.

Documentation

ReadTheDocs

PDF

Contact Info

Chien-Chi Lo: chienchi@lanl.gov
Paul Li: po-e@lanl.gov
Joe Anderson (DTRA/NMRC): joseph.j.anderson2.civ@mail.mil Logan Voegtly (HJF/NMRC): logan.j.voegtly.ctr@mail.mil

Citation

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

Po-E Li; Chien-Chi Lo; Joseph J. Anderson; Karen W. Davenport; Kimberly A. Bishop-Lilly; Yan Xu; Sanaa Ahmed; Shihai Feng; Vishwesh P. Mokashi; Patrick S.G. Chain

Nucleic Acids Research 2016;

[doi: 10.1093/nar/gkw1027] (http://nar.oxfordjournals.org/content/early/2016/11/28/nar.gkw1027.abstract?keytype=ref&ijkey=KzcEnQzdYkdjPCU)

Copyright

Copyright (2013). Triad National Security, LLC. All rights reserved.

This program was produced under U.S. Government contract 89233218CNA000001 for Los Alamos National Laboratory (LANL), which is operated by Triad National Security, LLC for the U.S. Department of Energy/National Nuclear Security Administration.

All rights in the program are reserved by Triad National Security, LLC, and the U.S. Department of Energy/National Nuclear Security Administration. The Government is granted for itself and others acting on its behalf a nonexclusive, paid-up, irrevocable worldwide license in this material to reproduce, prepare derivative works, distribute copies to the public, perform publicly and display publicly, and to permit others to do so.

This is open source software; you can redistribute it and/or modify it under the terms of the GPLv3 License. If software is modified to produce derivative works, such modified software should be clearly marked, so as not to confuse it with the version available from LANL. Full text of the GPLv3 License can be found in the License file in the main development branch of the repository.

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EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

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