/
LEMS_v0.7.6.xsd
644 lines (435 loc) · 25.2 KB
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LEMS_v0.7.6.xsd
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<?xml version="1.0" encoding="UTF-8"?>
<!--
v0.7.6: Adds description attribute to Child and Children & ComponentReference
v0.7.5: Adds description attribute to DerivedParameter and DerivedVariable
v0.7.4 supporting new LEMS elements required for recording events: EventWriter, EventRecord;
added Assign as possible child of Tunnel
v0.7.3 supporting new LEMS elements required for GapJunctions & new connection specifications:
Tunnel, InstanceRequirement, IndexParameter, ComponentRequirement
v0.7.2 added the ability to validate LEMS files containing Simulation elements, as the form of this element
is reasonably stable now
v0.7.1 was a minor update, re adding the DerivedParameter element in ComponentType, and fully specifying the
Simulation element so Simulation.xml can be validated
v0.6 & v0.7 were updates prompted by the refactored Java LEMS implementation (https://github.com/robertcannon/jLEMS)
and pylems (https://github.com/lisphacker/pylems)
-->
<xs:schema targetNamespace="http://www.neuroml.org/lems/0.7.6"
xmlns="http://www.neuroml.org/lems/0.7.6"
xmlns:xs="http://www.w3.org/2001/XMLSchema"
elementFormDefault="qualified"
attributeFormDefault="unqualified">
<xs:element name="Lems">
<xs:annotation>
<xs:documentation>The root Lems element.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="Target" type="Target" minOccurs="0" maxOccurs="1"/>
<xs:element name="Include" type="Include" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Dimension" type="Dimension" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Unit" type="Unit" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Constant" type="Constant" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="ComponentType" type="ComponentType" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Component" type="Component" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<!--<xs:unique name="dimension_uniqueness">
<xs:selector xpath="Dimension"></xs:selector>
<xs:field xpath="@name"></xs:field>
</xs:unique>-->
</xs:element>
<xs:complexType name="Target">
<xs:attribute name="component" type="xs:string" use="required"/>
<xs:attribute name="reportFile" type="xs:string" use="optional">
<xs:annotation>
<xs:documentation>jLEMS only optional attribute to also write a short report with simulation duration, version, etc.</xs:documentation>
</xs:annotation>
</xs:attribute>
<xs:attribute name="timesFile" type="xs:string" use="optional">
<xs:annotation>
<xs:documentation>jLEMS only optional attribute to also write a file containing actual times used in the simulation.</xs:documentation>
</xs:annotation>
</xs:attribute>
</xs:complexType>
<xs:complexType name="Include">
<xs:attribute name="file" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="Dimension">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="m" type="xs:integer" use="optional" default="0"/>
<xs:attribute name="l" type="xs:integer" use="optional" default="0"/>
<xs:attribute name="t" type="xs:integer" use="optional" default="0"/>
<xs:attribute name="i" type="xs:integer" use="optional" default="0"/>
<xs:attribute name="k" type="xs:integer" use="optional" default="0"/>
<xs:attribute name="n" type="xs:integer" use="optional" default="0"/>
</xs:complexType>
<xs:complexType name="Unit">
<xs:attribute name="symbol" type="xs:string" use="required"/>
<xs:attribute name="dimension" type="xs:string" use="required"/>
<xs:attribute name="power" type="xs:integer" use="optional" default="0">
<xs:annotation>
<xs:documentation>Some have asked whether fractional dimensions should be allowed. Disallowing it until needed...</xs:documentation>
</xs:annotation>
</xs:attribute>
<xs:attribute name="scale" type="xs:float" use="optional" default="1"/>
<xs:attribute name="offset" type="xs:float" use="optional" default="0"/>
</xs:complexType>
<xs:complexType name="DerivedParameter">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="dimension" type="xs:string" use="optional" default="none"/>
<xs:attribute name="value" type="xs:string" use="required"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:simpleType name="PhysicalQuantity">
<xs:annotation>
<xs:documentation>A value for a physical quantity in LEMS, e.g. 20, -60.0mV, .05 per_ms or 5nA</xs:documentation>
</xs:annotation>
<xs:restriction base="xs:string">
<xs:pattern value="-?([0-9]*(\.[0-9]+)?)([eE]-?[0-9]+)?[\s]*([_a-zA-Z0-9])*"/>
</xs:restriction>
</xs:simpleType>
<xs:complexType name="Constant">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="dimension" type="xs:string" use="optional" default="none"/>
<xs:attribute name="value" type="PhysicalQuantity" use="required"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="ComponentReference">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="type" type="xs:string" use="required"/>
<xs:attribute name="local" type="xs:string" use="optional"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="Child">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="type" type="xs:string" use="required"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="Attachments">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="type" type="xs:string" use="required"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="EventPort">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="direction" type="xs:string" use="required"/> <!-- Should be enumeration... -->
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="Fixed">
<xs:attribute name="parameter" type="xs:string" use="required"/>
<xs:attribute name="value" type="PhysicalQuantity" use="required"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="Link">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="type" type="xs:string" use="required"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="Children">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="type" type="xs:string" use="optional"/>
<xs:attribute name="min" type="xs:integer" use="optional"/>
<xs:attribute name="max" type="xs:integer" use="optional"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="Path">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="Text">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="StateVariable">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="dimension" type="xs:string" use="optional" default="none"/>
<xs:attribute name="exposure" type="xs:string" use="optional"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="DerivedVariable">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="dimension" type="xs:string" use="optional" default="none"/>
<xs:attribute name="exposure" type="xs:string" use="optional"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
<xs:attribute name="select" type="xs:string" use="optional"/> <!-- only one of these... -->
<xs:attribute name="value" type="xs:string" use="optional"/> <!-- only one of these... -->
<xs:attribute name="reduce" type="xs:string" use="optional"/> <!-- only if select present... -->
<xs:attribute name="required" type="xs:string" use="optional"/> <!-- only if reduce present... -->
</xs:complexType>
<xs:complexType name="ConditionalDerivedVariable">
<xs:sequence>
<xs:element name="Case" type="Case" minOccurs="1" maxOccurs="unbounded"/>
</xs:sequence>
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="dimension" type="xs:string" use="optional" default="none"/>
<xs:attribute name="exposure" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="Case">
<xs:attribute name="condition" type="xs:string" use="optional"/>
<xs:attribute name="value" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="TimeDerivative">
<xs:attribute name="variable" type="xs:string" use="required"/>
<xs:attribute name="value" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="OnStart">
<xs:sequence>
<xs:element name="StateAssignment" type="StateAssignment" minOccurs="1" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="OnEntry">
<xs:sequence>
<xs:element name="StateAssignment" type="StateAssignment" minOccurs="1" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="OnEvent">
<xs:sequence>
<xs:element name="StateAssignment" type="StateAssignment" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="EventOut" type="EventOut" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
<xs:attribute name="port" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="OnCondition">
<xs:sequence>
<xs:element name="StateAssignment" type="StateAssignment" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="EventOut" type="EventOut" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Transition" type="Transition" minOccurs="0" maxOccurs="1"/> <!-- only on OnCondition inside Regime... -->
</xs:sequence>
<xs:attribute name="test" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="EventOut">
<xs:attribute name="port" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="StateAssignment">
<xs:attribute name="variable" type="xs:string" use="required"/>
<xs:attribute name="value" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="Regime">
<xs:sequence>
<xs:element name="TimeDerivative" type="TimeDerivative" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="OnEntry" type="OnEntry" minOccurs="0" maxOccurs="1"/>
<xs:element name="OnCondition" type="OnCondition" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="initial" type="TrueOrFalse" use="optional"/>
</xs:complexType>
<xs:simpleType name="TrueOrFalse">
<xs:restriction base="xs:string">
<xs:enumeration value="true"/>
<xs:enumeration value="false"/>
</xs:restriction>
</xs:simpleType>
<xs:complexType name="Transition">
<xs:attribute name="regime" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="Component">
<xs:sequence>
<xs:any minOccurs="0" maxOccurs="unbounded" processContents="lax"/>
</xs:sequence>
<xs:anyAttribute processContents="skip"/>
</xs:complexType>
<!-- ComponentType is used for component definitions containing parts which are currently specific to LEMS, e.g. Build/MultiInstantiate -->
<xs:complexType name="ComponentType">
<xs:sequence>
<xs:element name="Property" type="Property" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Parameter" type="Parameter" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="DerivedParameter" type="DerivedParameter" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="IndexParameter" type="IndexParameter" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Constant" type="Constant" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Child" type="Child" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Children" type="Children" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Fixed" type="Fixed" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Link" type="Link" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="ComponentReference" type="ComponentReference" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Attachments" type="Attachments" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="EventPort" type="EventPort" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Exposure" type="Exposure" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Requirement" type="Requirement" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="ComponentRequirement" type="ComponentRequirement" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="InstanceRequirement" type="InstanceRequirement" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Path" type="Path" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Text" type="Text" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Dynamics" type="Dynamics" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Structure" type="Structure" minOccurs="0" maxOccurs="1"/>
<xs:element name="Simulation" type="Simulation" minOccurs="0" maxOccurs="1"/>
</xs:sequence>
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="extends" type="xs:string" use="optional"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<!-- for Parameter, StateVariable etc. -->
<xs:complexType name="NamedDimensionalType">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="dimension" type="xs:string" use="optional" default="none"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="Property">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="dimension" type="xs:string" use="optional" default="none"/>
<xs:attribute name="description" type="xs:string" use="optional"/>
<xs:attribute name="defaultValue" type="xs:double" use="optional"/>
</xs:complexType>
<xs:complexType name="Parameter"> <!-- For language binding generators, so there will be a class of this name... -->
<xs:complexContent>
<xs:extension base="NamedDimensionalType"/>
</xs:complexContent>
</xs:complexType>
<xs:complexType name="IndexParameter">
<xs:attribute name="name" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="Requirement"> <!-- For language binding generators, so there will be a class of this name... -->
<xs:complexContent>
<xs:extension base="NamedDimensionalType"/>
</xs:complexContent>
</xs:complexType>
<xs:complexType name="Exposure"> <!-- For language binding generators, so there will be a class of this name... -->
<xs:complexContent>
<xs:extension base="NamedDimensionalType"/>
</xs:complexContent>
</xs:complexType>
<xs:complexType name="ComponentRequirement">
<xs:attribute name="name" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="InstanceRequirement">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="type" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="Dynamics">
<xs:sequence>
<xs:element name="StateVariable" type="StateVariable" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="DerivedVariable" type="DerivedVariable" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="ConditionalDerivedVariable" type="ConditionalDerivedVariable" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="TimeDerivative" type="TimeDerivative" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="OnStart" type="OnStart" minOccurs="0" maxOccurs="1"/>
<xs:element name="OnEvent" type="OnEvent" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="OnCondition" type="OnCondition" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Regime" type="Regime" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="KineticScheme" type="KineticScheme" minOccurs="0" maxOccurs="1"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="Structure">
<xs:sequence>
<xs:element name="ChildInstance" type="ChildInstance" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="MultiInstantiate" type="MultiInstantiate" minOccurs="0" maxOccurs="1"/>
<xs:element name="ForEach" type="ForEach" minOccurs="0" maxOccurs="1"/>
<xs:element name="With" type="With" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Tunnel" type="Tunnel" minOccurs="0" maxOccurs="1"/>
<xs:element name="EventConnection" type="EventConnection" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="ChildInstance">
<xs:attribute name="component" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="MultiInstantiate">
<xs:attribute name="component" type="xs:string" use="required"/>
<xs:attribute name="number" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="ForEach">
<xs:sequence>
<xs:element name="MultiInstantiate" type="MultiInstantiate" minOccurs="0" maxOccurs="1"/>
<!--<xs:element name="ForEach" type="ForEach" minOccurs="0" maxOccurs="1"/>
<xs:element name="EventConnection" type="EventConnection" minOccurs="0" maxOccurs="1"/>-->
</xs:sequence>
<xs:attribute name="instances" type="xs:string" use="required"/>
<xs:attribute name="as" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="With">
<!-- EITHER instance OR list & index shoulf be used!!-->
<xs:attribute name="instance" type="xs:string" use="optional"/>
<xs:attribute name="list" type="xs:string" use="optional"/>
<!-- EITHER instance OR list & index shoulf be used!!-->
<xs:attribute name="index" type="xs:string" use="optional"/>
<xs:attribute name="as" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="Tunnel">
<xs:sequence>
<xs:element name="Assign" type="Assign" minOccurs="0" maxOccurs="1"/>
</xs:sequence>
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="endA" type="xs:string" use="required"/>
<xs:attribute name="endB" type="xs:string" use="required"/>
<xs:attribute name="componentA" type="xs:string" use="required"/>
<xs:attribute name="componentB" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="EventConnection">
<xs:sequence>
<xs:element name="Assign" type="Assign" minOccurs="0" maxOccurs="1"/>
</xs:sequence>
<xs:attribute name="from" type="xs:string" use="required"/>
<xs:attribute name="to" type="xs:string" use="required"/>
<xs:attribute name="sourcePort" type="xs:string" use="optional"/>
<xs:attribute name="targetPort" type="xs:string" use="optional"/>
<xs:attribute name="receiver" type="xs:string" use="optional"/>
<xs:attribute name="receiverContainer" type="xs:string" use="optional"/>
<xs:attribute name="delay" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="Assign">
<xs:attribute name="property" type="xs:string" use="required"/>
<xs:attribute name="value" type="xs:string" use="required"/>
</xs:complexType>
<!--<xs:complexType name="OnCondition">
<xs:sequence>
<xs:element name="StateAssignment" type="StateAssignment" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="EventOut" type="EventOut" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Transition" type="Transition" minOccurs="0" maxOccurs="1"/>
</xs:sequence>
<xs:attribute name="test" type="xs:string" use="required"/>
</xs:complexType>-->
<xs:complexType name="KineticScheme">
<xs:attribute name="name" type="xs:string" use="required"/>
<xs:attribute name="nodes" type="xs:string" use="required"/>
<xs:attribute name="stateVariable" type="xs:string" use="required"/>
<xs:attribute name="edges" type="xs:string" use="required"/>
<xs:attribute name="edgeSource" type="xs:string" use="required"/>
<xs:attribute name="edgeTarget" type="xs:string" use="required"/>
<xs:attribute name="forwardRate" type="xs:string" use="required"/>
<xs:attribute name="reverseRate" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="Simulation">
<xs:sequence>
<xs:element name="DataDisplay" type="DataDisplay" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Record" type="Record" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="EventRecord" type="EventRecord" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Run" type="Run" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="DataWriter" type="DataWriter" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="EventWriter" type="EventWriter" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="Meta" type="Meta" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="DataDisplay">
<xs:attribute name="title" type="xs:string" use="required"/>
<xs:attribute name="dataRegion" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="Record">
<xs:attribute name="quantity" type="xs:string" use="required"/>
<xs:attribute name="timeScale" type="xs:string" use="optional"/>
<xs:attribute name="scale" type="xs:string" use="optional"/>
<xs:attribute name="color" type="xs:string" use="optional"/>
</xs:complexType>
<xs:complexType name="EventRecord">
<xs:attribute name="quantity" type="xs:string" use="required"/>
<xs:attribute name="eventPort" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="Run">
<xs:attribute name="component" type="xs:string" use="required"/>
<xs:attribute name="variable" type="xs:string" use="required"/>
<xs:attribute name="increment" type="xs:string" use="required"/>
<xs:attribute name="total" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="DataWriter">
<xs:attribute name="path" type="xs:string" use="required"/>
<xs:attribute name="fileName" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="EventWriter">
<xs:attribute name="path" type="xs:string" use="required"/>
<xs:attribute name="fileName" type="xs:string" use="required"/>
<xs:attribute name="format" type="xs:string" use="required"/>
</xs:complexType>
<xs:complexType name="Meta">
<xs:sequence>
<xs:any minOccurs="0" maxOccurs="unbounded" processContents="lax"/>
</xs:sequence>
<xs:anyAttribute processContents="skip"/>
</xs:complexType>
</xs:schema>