GitHub statistics
Bioconductor contributions
As maintainer
As co-maintainer
| Package | BioC-devel | BioC-release |
|---|---|---|
| edgeR |  |
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| scater |  |
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| SingleCellExperiment |  |
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| iSEE |  |
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| iSEEu |  |
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| TENxBrainData |  |
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| TSCAN |  |
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Popular repositories
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Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
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archive-beachmat Archived
An archived version of the beachmat repository, see https://github.com/LTLA/beachmat for the active version.
C++ 8
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4,195 contributions in the last year
Activity overview
Contributed to
iSEE/iSEE,
Bioconductor/OrchestratingSingleCellAnalysis,
LTLA/basilisk
and 5 other
repositories
Contribution activity
October 2020
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- 1 repository not shown
Created a pull request in iSEE/iSEEu that received 2 comments
Initial draft of the AggregatedDotPlot panel.
Basically, single-cell dot plots. Needs some tests and docs and such. Probably could share some stuff better with ComplexHeatmapPlot without inheri…
+1,180
−3
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2
comments
- Bugfix for correct selection effect interface.
- Support a named vector to initialize the Table column search.
- Bumped version and date.
- Switch colormap getters to use an internal cache.
- Enable custom saving of the application state.
- Publish every few days to DockerHub, no matter what.
- Switch to iSEE docker image to provide the necessary dependencies.
- More fixes and exports, just because.
- Minor fixes.
- Fiddling with observers
- Added generic to define the selection effect UI.
- Export a whole bunch of stuff to use in iSEEu
Created an issue in Bioconductor/S4Vectors that received 1 comment
showAsCell doesn't quite work with Lists of complex objects
Consider the following: library(Rsamtools) library(S4Vectors) X <- List(BamFile("A"), BamFile("B")) showAsCell(X) ## Error in x[seq_len(n)] : objec…
1
comment