{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":192816918,"defaultBranch":"master","name":"SingleR","ownerLogin":"LTLA","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-06-19T23:25:34.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/8166669?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1716417191.0","currentOid":""},"activityList":{"items":[{"before":"c418d6319928d3283e5e39b6ce7ec491e8396097","after":null,"ref":"refs/heads/v3","pushedAt":"2024-05-22T22:33:11.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"}},{"before":"013d7f40c1b8fe6e22d0598902ddb5a24d7b0be4","after":"84a6e55d43f96794c38b9f28bbcc3b93d7db46e3","ref":"refs/heads/master","pushedAt":"2024-05-22T22:33:08.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Updates for the latest version of the tatami library. (#271)\n\nRequire the minimum version for the latest beachmat.","shortMessageHtmlLink":"Updates for the latest version of the tatami library. (#271)"}},{"before":"da65885be3d0ada259ba718d417579fb84211043","after":"013d7f40c1b8fe6e22d0598902ddb5a24d7b0be4","ref":"refs/heads/master","pushedAt":"2024-05-22T22:31:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Don't test for warnings about NA's, updated docs about silent removal.","shortMessageHtmlLink":"Don't test for warnings about NA's, updated docs about silent removal."}},{"before":"47e38e194693b6f4e72c3772749e4271f2af84a7","after":"c418d6319928d3283e5e39b6ce7ec491e8396097","ref":"refs/heads/v3","pushedAt":"2024-05-22T22:30:13.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Require the minimum version for the latest beachmat.","shortMessageHtmlLink":"Require the minimum version for the latest beachmat."}},{"before":"6f39894a7e2b52ed0335e1375c849e47a7e47b3f","after":"47e38e194693b6f4e72c3772749e4271f2af84a7","ref":"refs/heads/v3","pushedAt":"2024-05-22T22:13:25.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Bumped version and date.","shortMessageHtmlLink":"Bumped version and date."}},{"before":null,"after":"6f39894a7e2b52ed0335e1375c849e47a7e47b3f","ref":"refs/heads/v3","pushedAt":"2024-05-22T17:22:39.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Updates for the latest version of the tatami library.","shortMessageHtmlLink":"Updates for the latest version of the tatami library."}},{"before":"20450a118ef71f38e1add96d289788537695184e","after":"da65885be3d0ada259ba718d417579fb84211043","ref":"refs/heads/master","pushedAt":"2024-05-22T16:37:08.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'upstream/master'","shortMessageHtmlLink":"Merge remote-tracking branch 'upstream/master'"}},{"before":"5603599de5bc299d3f5fa79ab4ca64d50af13da6","after":"20450a118ef71f38e1add96d289788537695184e","ref":"refs/heads/master","pushedAt":"2024-02-26T17:04:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Do not emit a warning when missing values are found.\n\nJust remove them and continue without the noise. We're already silently\nremoving them in celldex so it doesn't make sense to be chatty here.","shortMessageHtmlLink":"Do not emit a warning when missing values are found."}},{"before":"bc7739fc34f2d3113e480da08608cf7778763681","after":"5603599de5bc299d3f5fa79ab4ca64d50af13da6","ref":"refs/heads/master","pushedAt":"2024-02-14T07:15:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Minor docfixes, mostly related to the absence of first.labels.","shortMessageHtmlLink":"Minor docfixes, mostly related to the absence of first.labels."}},{"before":"0097d1aded4222590423fe23bcb2dc8700632118","after":"bc7739fc34f2d3113e480da08608cf7778763681","ref":"refs/heads/master","pushedAt":"2024-01-05T23:59:16.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Merge branch 'master' of git.bioconductor.org:packages/SingleR","shortMessageHtmlLink":"Merge branch 'master' of git.bioconductor.org:packages/SingleR"}},{"before":"35dbc66c0898a8c09783afba94192be188264226","after":"0097d1aded4222590423fe23bcb2dc8700632118","ref":"refs/heads/master","pushedAt":"2024-01-05T23:58:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Bumped version and date.","shortMessageHtmlLink":"Bumped version and date."}},{"before":"0a646290510eb38749a0c633f32579daf6a3fc92","after":null,"ref":"refs/heads/heatmap-color","pushedAt":"2024-01-05T23:51:49.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"}},{"before":"8337ab667f6ff61582052b0f37cb444eac1cc3b8","after":"35dbc66c0898a8c09783afba94192be188264226","ref":"refs/heads/master","pushedAt":"2024-01-05T23:51:46.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Respect user-supplied color= in plotScoreHeatmap when 'normalize=TRUE' (#259)\n\nAlso allow users to override breaks, legend_breaks, and legend_labels.","shortMessageHtmlLink":"Respect user-supplied color= in plotScoreHeatmap when 'normalize=TRUE' ("}},{"before":"d37a18758daebde00331f5474a3aaafc67f015c3","after":"0a646290510eb38749a0c633f32579daf6a3fc92","ref":"refs/heads/heatmap-color","pushedAt":"2024-01-05T23:09:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Clarified documentation, minor bugfix.","shortMessageHtmlLink":"Clarified documentation, minor bugfix."}},{"before":"79736f91e496672d4dce7e800e4114bfb72f8765","after":"d37a18758daebde00331f5474a3aaafc67f015c3","ref":"refs/heads/heatmap-color","pushedAt":"2024-01-03T16:40:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dtm2451","name":"Daniel Bunis","path":"/dtm2451","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38870347?s=80&v=4"},"commit":{"message":"fix broken test","shortMessageHtmlLink":"fix broken test"}},{"before":"9975c544b578f71c27419e516e643f8f091622df","after":"79736f91e496672d4dce7e800e4114bfb72f8765","ref":"refs/heads/heatmap-color","pushedAt":"2024-01-03T16:26:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dtm2451","name":"Daniel Bunis","path":"/dtm2451","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38870347?s=80&v=4"},"commit":{"message":"fix broken test","shortMessageHtmlLink":"fix broken test"}},{"before":"56d83d9292244f2d3891b62cd66912513028a04a","after":"9975c544b578f71c27419e516e643f8f091622df","ref":"refs/heads/heatmap-color","pushedAt":"2024-01-03T16:03:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dtm2451","name":"Daniel Bunis","path":"/dtm2451","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38870347?s=80&v=4"},"commit":{"message":"document and let users control plotScoreHeatmap pheatmap inputs breaks, legend_breaks, and legend_labels","shortMessageHtmlLink":"document and let users control plotScoreHeatmap pheatmap inputs break…"}},{"before":"bacf95cc228aefc8b7526f87080c8f89b35eec3b","after":"56d83d9292244f2d3891b62cd66912513028a04a","ref":"refs/heads/heatmap-color","pushedAt":"2024-01-02T22:35:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dtm2451","name":"Daniel Bunis","path":"/dtm2451","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38870347?s=80&v=4"},"commit":{"message":"test expanded plotScoreHeatmap color control","shortMessageHtmlLink":"test expanded plotScoreHeatmap color control"}},{"before":null,"after":"bacf95cc228aefc8b7526f87080c8f89b35eec3b","ref":"refs/heads/heatmap-color","pushedAt":"2024-01-02T21:48:34.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dtm2451","name":"Daniel Bunis","path":"/dtm2451","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38870347?s=80&v=4"},"commit":{"message":"let users control plotScoreHeatmap color when normalize=TRUE","shortMessageHtmlLink":"let users control plotScoreHeatmap color when normalize=TRUE"}},{"before":"5b50f0de6f0c882cc605d2f4697ab0fcd949f8bd","after":"8337ab667f6ff61582052b0f37cb444eac1cc3b8","ref":"refs/heads/master","pushedAt":"2023-09-11T09:26:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Minor clarification to documentation for manual genes.","shortMessageHtmlLink":"Minor clarification to documentation for manual genes."}},{"before":"b7c7ce0bd3d320d2939a91dc337defe4d9b8bf05","after":"5b50f0de6f0c882cc605d2f4697ab0fcd949f8bd","ref":"refs/heads/master","pushedAt":"2023-09-03T06:46:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Shifted median calculations into C++ via tatami.","shortMessageHtmlLink":"Shifted median calculations into C++ via tatami."}},{"before":"9e8ddb18338fb88747bb24a214dae281372742b3","after":"b7c7ce0bd3d320d2939a91dc337defe4d9b8bf05","ref":"refs/heads/master","pushedAt":"2023-08-15T05:17:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Fixed the badges.","shortMessageHtmlLink":"Fixed the badges."}},{"before":"2d0090c8c03410380d4674c20bbb440d7cf7524a","after":"9e8ddb18338fb88747bb24a214dae281372742b3","ref":"refs/heads/master","pushedAt":"2023-06-30T16:04:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Updated the vendored singlepp library.","shortMessageHtmlLink":"Updated the vendored singlepp library."}},{"before":"6b057e59f35cd1927164ebfc0903040de3c80b56","after":"2d0090c8c03410380d4674c20bbb440d7cf7524a","ref":"refs/heads/master","pushedAt":"2023-06-04T17:42:02.412Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Use log-transformed P-values in trainSingleR() (#243)\n\nThis avoids problems with tied p-values of zero when there are many cells in\r\nthe reference dataset.","shortMessageHtmlLink":"Use log-transformed P-values in trainSingleR() (#243)"}},{"before":"36a7a0490940a9d02cd51bb48a1564b34b6a4642","after":"6b057e59f35cd1927164ebfc0903040de3c80b56","ref":"refs/heads/master","pushedAt":"2023-05-24T18:21:11.669Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Fixed the CI action.","shortMessageHtmlLink":"Fixed the CI action."}},{"before":"c95c35fc9837649bba17b9deacd536dda448de54","after":"36a7a0490940a9d02cd51bb48a1564b34b6a4642","ref":"refs/heads/master","pushedAt":"2023-05-24T18:11:57.794Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Fixed the CI action.","shortMessageHtmlLink":"Fixed the CI action."}},{"before":"343606b2a470afaa03afd9ca08ac817b95f1bf73","after":null,"ref":"refs/heads/beached","pushedAt":"2023-05-24T18:10:44.910Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"}},{"before":"2cdcf67278548f57712be070100b1e05fd09be72","after":"c95c35fc9837649bba17b9deacd536dda448de54","ref":"refs/heads/master","pushedAt":"2023-05-24T18:10:41.971Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Transition to the new beachmat initialization strategy. (#240)\n\nThis uses beachmat::initializeCpp to create the tatami matrix, rather than\r\ncalling the (now defunct) raticate::parse. The aim is to shift the\r\nresponsibility of initialization to beachmat so that the parsing code does not\r\nhave to be recompiled in every beachmat dependency.","shortMessageHtmlLink":"Transition to the new beachmat initialization strategy. (#240)"}},{"before":"fc2d7662be6fa2344383ba233a5a6c93cfa3a6e1","after":"343606b2a470afaa03afd9ca08ac817b95f1bf73","ref":"refs/heads/beached","pushedAt":"2023-05-24T18:08:11.938Z","pushType":"push","commitsCount":1,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Bumped version and date.","shortMessageHtmlLink":"Bumped version and date."}},{"before":"ff3bfc968ee589ff2262a0080dd91d2a9d785c4f","after":"fc2d7662be6fa2344383ba233a5a6c93cfa3a6e1","ref":"refs/heads/beached","pushedAt":"2023-05-24T17:52:35.862Z","pushType":"push","commitsCount":2,"pusher":{"login":"LTLA","name":"Aaron Lun","path":"/LTLA","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8166669?s=80&v=4"},"commit":{"message":"Merge branch 'master' into beached","shortMessageHtmlLink":"Merge branch 'master' into beached"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEUW3EGwA","startCursor":null,"endCursor":null}},"title":"Activity · LTLA/SingleR"}