From d4aed6584f870682e2a45dab0a65bbe50e0d7906 Mon Sep 17 00:00:00 2001
From: Susan Hert <susanh@labkey.com>
Date: Mon, 18 Apr 2022 17:12:21 -0700
Subject: [PATCH] Update maven repositories in preparation for Artifactory
 configuration change (#105)

---
 primeseq/build.gradle  | 8 ++++++++
 tcrdb/build.gradle     | 8 ++++++++
 variantdb/build.gradle | 8 ++++++++
 3 files changed, 24 insertions(+)

diff --git a/primeseq/build.gradle b/primeseq/build.gradle
index 0d7767f20..1a8b44122 100644
--- a/primeseq/build.gradle
+++ b/primeseq/build.gradle
@@ -1,5 +1,13 @@
 import org.labkey.gradle.util.BuildUtils;
 
+repositories {
+    mavenCentral()
+    // Added for org.clojars.chapmanb:sam dependency required by com.github.samtools:htsjdk
+    maven {
+        url "https://clojars.org/repo"
+    }
+}
+
 dependencies {
     implementation "com.github.samtools:htsjdk:${htsjdkVersion}"
     implementation "net.sf.opencsv:opencsv:${opencsvVersion}"
diff --git a/tcrdb/build.gradle b/tcrdb/build.gradle
index de1b8d419..44b61bd11 100644
--- a/tcrdb/build.gradle
+++ b/tcrdb/build.gradle
@@ -1,5 +1,13 @@
 import org.labkey.gradle.util.BuildUtils;
 
+repositories {
+   mavenCentral()
+   // Added for org.clojars.chapmanb:sam dependency required by com.github.samtools:htsjdk
+   maven {
+      url "https://clojars.org/repo"
+   }
+}
+
 dependencies {
    BuildUtils.addLabKeyDependency(project: project, config: "implementation", depProjectPath: ":server:modules:DiscvrLabKeyModules:singlecell", depProjectConfig: "apiJarFile")
    BuildUtils.addLabKeyDependency(project: project, config: "implementation", depProjectPath: ":server:modules:DiscvrLabKeyModules:SequenceAnalysis", depProjectConfig: "apiJarFile")
diff --git a/variantdb/build.gradle b/variantdb/build.gradle
index 3752d3158..d260381fe 100644
--- a/variantdb/build.gradle
+++ b/variantdb/build.gradle
@@ -1,5 +1,13 @@
 import org.labkey.gradle.util.BuildUtils;
 
+repositories {
+      mavenCentral()
+      // Added for org.clojars.chapmanb:sam dependency required by com.github.samtools:htsjdk
+      maven {
+            url "https://clojars.org/repo"
+      }
+}
+
 dependencies {
       implementation "com.github.samtools:htsjdk:${htsjdkVersion}"
       external "commons-net:commons-net:${commonsNetVersion}"