pyTMT returns ms2 tandem mass tag quantification values from Crux/Percolator output.
See the Documentations for more information.
Install Python 3.7+ and pip. See instructions on Python website for specific instructions for your operating system.
Install pyTMT from PyPI. We recommend using a virtual environment.
$ pip install pytmt
Launch pyTMT as a Python module (Usage/Help)
$ python -m pytmt -h
Console entry point:
$ pytmt
pyTMT is tested in Python 3.7, and 3.8 and requires the following packages:
pandas>=1.0.4
pymzml==2.5.2
tqdm>=4.46.0
scipy>=1.4.1
Please contact us if you wish to contribute, and submit pull requests to us.
- Edward Lau, PhD - Code/design - ed-lau
- Maggie Lam, PhD - Code/design - Maggie-Lam
This project is licensed under the MIT License - see the LICENSE file for details