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DormancyGPCA

Resolving the Great Plate Count Anomaly

Goal

Microorganisms that engage in dormancy become members of a seed bank, a reservoir of genetic diversity, of which resuscitation from will be a critical solution to resolving the GPCA. This experiment represents a step in understanding how cell-cell signaling pathways can be used to study microbial seed bank and begin to resolve the GPCA.

Contents

analyses R code of workflow pipeline for .shared file output from using mothur R code for treatment x OTU species diversity analysis

bin Mothurtoolkit from Reservior Gradient Github repo as created by M. Muscraella

data mothur output .shared, .tax, .summary files

figures

Software used and versions

R Programing v3.3.0 Mothur v1.36.1 gcc

Known Bugs and Issues

Contributors

Venus Kuo: Ph.D. student in the Lennon Lab

Funding

Dimensions of Biodiversity National Science Foundation

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