Skip to content

LennonLab/flow-cytometry

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

32 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Assessing community microbial community activity with flow cytometry

This repository contains open-source code and data to process, analyze, and visualize microbial activity using flow cytometry.

##Contents

Directories and Files

analyses This directory contains the analyses required for processing data collected to quantify active (A), dormant (D), and dead (D) microbial populations.

  • ActivityFlowCytometry.Rmd Rmarkdown file for figure generation
  • flowDataScript.R script code to generate population data. This script must be run for every batch experiment (i.e. timecourse culture, environmental group).

bin This directory contains source code needed for the analysis of flow cytometry data.

data

figures

Quality Assurance (QA) This directory contains quality assessment output data for the analyzed samples

temp_retired

##Contributors Megan Larsen: PhD candidate in the Lennon Lab

William Shoemaker

Jay Lennon

About

No description, website, or topics provided.

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published