Skip to content

Claculates the number of sequening reads required for the minimal coverage to be higher than some value

License

Notifications You must be signed in to change notification settings

LennonLab/sequencing-read-calculator

Repository files navigation

sequencing-read-calculator

Claculates the number of sequening reads required for the minimal coverage to be higher than some value

Scenario: resequencing an evolved population (single species) to charecterize diversity.

The following code calculates the number of reads needed to insure that all the bases are sequenced by some minimal covrage.

Calculation is based on footnote #2 in Ilumina techical note "Estimating Sequencing Coverage" https://support.illumina.com/content/dam/illumina-marketing/documents/products/technotes/technote_optimizing_coverage_for_targeted_resequencing.pdf

see pdf file in repo

About

Claculates the number of sequening reads required for the minimal coverage to be higher than some value

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages