Skip to content
This is a collection of small scripts built by the Lenz lab to make RNA sequencing tasks more efficient.
Perl Perl6
Find file
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Failed to load latest commit information.
Fasta.pm
README.md
comparetables.pl
comphist.pl
comphist2.pl
countconsec.pl
fastatest.pl
fastqDivide.pl
filterduplicates.pl
findpatterns.pl
firstseq.pl
getmultiples.pl
longestseq.pl
onlycomp.pl
querytable.pl
removeadapter.pl
scriptdescriptions.txt
segmentFinder.pl
segregate.pl
slidingMatch.pl
sorttable.pl
subfasta.pl

README.md

RNA-seq-scripts

This is a collection of small scripts built by the Lenz lab to make RNA sequencing tasks more efficient.

./comphist.pl somename.fasta

perl comphist.pl somename.fasta

./subfasta choices.txt somename.fasta

perl subfasta choices.txt somename.fasta

choices.txt looks like this...

comp199230_c0_seq1

comp184052_c1_seq42

if you like you can pipe the output to another file

./comphist.pl somename.fasta > histogram.txt

./subfasta choices.txt somename.fasta > smaller.fasta

Something went wrong with that request. Please try again.