From bf3826f578cee861b5f86156e6a72dd2750b7b74 Mon Sep 17 00:00:00 2001 From: Yenaled Date: Tue, 21 Nov 2023 06:03:20 -0800 Subject: [PATCH] update --- ngs_tools/fasta/__init__.py | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/ngs_tools/fasta/__init__.py b/ngs_tools/fasta/__init__.py index c7b8913..ec5c2bc 100755 --- a/ngs_tools/fasta/__init__.py +++ b/ngs_tools/fasta/__init__.py @@ -35,8 +35,7 @@ def split_genomic_fasta_to_cdna( for gene_id, gene_attributes in gene_infos.items(): if gene_attributes['chromosome'] == entry.name: _gene_infos[gene_id] = gene_attributes - all_transcripts = gene_attributes['transcripts'] - all_transcripts.sort() + all_transcripts = sorted(gene_attributes['transcripts']) _transcript_infos.update({ transcript_id: transcript_infos[transcript_id] for transcript_id in all_transcripts @@ -109,8 +108,7 @@ def split_genomic_fasta_to_intron( for gene_id, gene_attributes in gene_infos.items(): if gene_attributes['chromosome'] == entry.name: _gene_infos[gene_id] = gene_attributes - all_transcripts = gene_attributes['transcripts'] - all_transcripts.sort() + all_transcripts = sorted(gene_attributes['transcripts']) _transcript_infos.update({ transcript_id: transcript_infos[transcript_id] for transcript_id in all_transcripts