{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":707837651,"defaultBranch":"main","name":"AI_MARRVEL","ownerLogin":"LiuzLab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-10-20T19:19:15.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/46576329?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1720645915.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"e59d18afd635e8c39bf0effcc2d44a67ef918204","ref":"refs/heads/exomefiltering","pushedAt":"2024-07-10T21:11:55.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jylee-bcm","name":"Jaeyeon Lee","path":"/jylee-bcm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/172427703?s=80&v=4"},"commit":{"message":"Filter exome regions in preprocessing steps","shortMessageHtmlLink":"Filter exome regions in preprocessing steps"}},{"before":null,"after":"6f74433e2a95a7f8d0dc47a8a84dd531be1ea6fb","ref":"refs/heads/eliminate_multiprocessing_in_prediction","pushedAt":"2024-07-09T16:48:28.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jylee-bcm","name":"Jaeyeon Lee","path":"/jylee-bcm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/172427703?s=80&v=4"},"commit":{"message":"Refactor prediction step to eliminate multiprocessing\n\nPreviously, multiprocessing was utilized in the\nprediction step, resulting in increased memory\nconsumption proportional\nto the number of worker processes.\nBy refactoring the code to replace multiprocessing with a simple for loop,\nmemory usage has been significantly reduced.\nThis change not only enhances efficiency\nby eliminating the overhead of virtual memory\nbut also accelerates runtime performance.","shortMessageHtmlLink":"Refactor prediction step to eliminate multiprocessing"}},{"before":null,"after":"aab49cc4de2ab8dcb79fa03fbf22375b9fe5269d","ref":"refs/heads/nan","pushedAt":"2024-07-09T16:25:35.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jylee-bcm","name":"Jaeyeon Lee","path":"/jylee-bcm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/172427703?s=80&v=4"},"commit":{"message":"Handle MT values as NaN to avoid string comparison\n\nThis change ensures that MT (Mitochondria) values are\ntreated as -1 to mean NaN (Not a Number),\nimproving the speed by eliminating string comparisons.","shortMessageHtmlLink":"Handle MT values as NaN to avoid string comparison"}},{"before":null,"after":"4930efc4657af774813761f41bc690656e43fd33","ref":"refs/heads/moddiffusion","pushedAt":"2024-07-05T21:15:00.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jylee-bcm","name":"Jaeyeon Lee","path":"/jylee-bcm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/172427703?s=80&v=4"},"commit":{"message":"Optimize mod5 diffusion","shortMessageHtmlLink":"Optimize mod5 diffusion"}},{"before":"643135e9dc2c6b3247821b40ff528b64b2a3af19","after":"0c6e6f15c5a14584e7e4527732c880bbf4b53696","ref":"refs/heads/main","pushedAt":"2024-07-01T14:52:42.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"Merge pull request #30 from LiuzLab/paper_update\n\ndoc: Updated AI-MARVEL manuscript link in README and Docs","shortMessageHtmlLink":"Merge pull request #30 from LiuzLab/paper_update"}},{"before":null,"after":"ba2f48e539d88c8099a38c9738b1ac768582f82e","ref":"refs/heads/paper_update","pushedAt":"2024-07-01T02:35:41.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ChaozhongLiu","name":null,"path":"/ChaozhongLiu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42524290?s=80&v=4"},"commit":{"message":"paper link updated","shortMessageHtmlLink":"paper link updated"}},{"before":"60c33971226e58ca251ffbbb8a170748072da2f9","after":null,"ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T19:50:10.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"}},{"before":"0aa6f0d277ac40ab58b5e3822328ee28382cbcaf","after":"643135e9dc2c6b3247821b40ff528b64b2a3af19","ref":"refs/heads/main","pushedAt":"2024-06-27T19:24:39.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"Merge pull request #29 from LiuzLab/feature/github-actions-testing\n\nFeature(ci): Add GitHub Actions for automated testing","shortMessageHtmlLink":"Merge pull request #29 from LiuzLab/feature/github-actions-testing"}},{"before":"ae699ec472f7b72fbb46a3bf86147698a78cbae9","after":"60c33971226e58ca251ffbbb8a170748072da2f9","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T19:16:55.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"ci: add GitHub Actions for automated testing","shortMessageHtmlLink":"ci: add GitHub Actions for automated testing"}},{"before":"d10fc48b0a10276a1d4ef32325d6607c533d6a66","after":"ae699ec472f7b72fbb46a3bf86147698a78cbae9","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T19:12:05.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"ci: add GitHub Actions for automated testing","shortMessageHtmlLink":"ci: add GitHub Actions for automated testing"}},{"before":"5fe46569cbb4e8ec0bda94a8aaa4fe6603c3dd21","after":"d10fc48b0a10276a1d4ef32325d6607c533d6a66","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T19:05:38.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"ci: add GitHub Actions for automated testing","shortMessageHtmlLink":"ci: add GitHub Actions for automated testing"}},{"before":"e55ef27ba7edaa4af6d99a6124c6dc1081843ab7","after":"5fe46569cbb4e8ec0bda94a8aaa4fe6603c3dd21","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T19:04:19.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"ci: add GitHub Actions step to close PR on failure, include head_ref for pull request","shortMessageHtmlLink":"ci: add GitHub Actions step to close PR on failure, include head_ref …"}},{"before":"9b30ad0578e8a41988008bfc6961883751daacfe","after":"e55ef27ba7edaa4af6d99a6124c6dc1081843ab7","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T19:02:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"fix(ci): Include head_ref for pull request","shortMessageHtmlLink":"fix(ci): Include head_ref for pull request"}},{"before":"52e52b185458ce33c6fe55f71f568378cd4a24e7","after":"9b30ad0578e8a41988008bfc6961883751daacfe","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T18:47:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"ci: add GitHub Actions step to close PR on failure","shortMessageHtmlLink":"ci: add GitHub Actions step to close PR on failure"}},{"before":"0aa6f0d277ac40ab58b5e3822328ee28382cbcaf","after":"52e52b185458ce33c6fe55f71f568378cd4a24e7","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T18:41:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"ci: add GitHub Actions for automated testing","shortMessageHtmlLink":"ci: add GitHub Actions for automated testing"}},{"before":"4872a88ab5ac064b32894516df160d9ea56188b7","after":"0aa6f0d277ac40ab58b5e3822328ee28382cbcaf","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T18:40:07.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"Merge pull request #28 from hyunhwan-bcm/docker-fix\n\nfix Dockerfile for R installation.","shortMessageHtmlLink":"Merge pull request #28 from hyunhwan-bcm/docker-fix"}},{"before":"10a073c44e614bf4aefbaad3b1778503d8a41a7e","after":"4872a88ab5ac064b32894516df160d9ea56188b7","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T18:19:39.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"ci: add GitHub Actions for automated testing","shortMessageHtmlLink":"ci: add GitHub Actions for automated testing"}},{"before":"6556416c24582f38a8177552029afc6ae75ae080","after":"10a073c44e614bf4aefbaad3b1778503d8a41a7e","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T18:11:09.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"ci: add GitHub Actions for automated testing","shortMessageHtmlLink":"ci: add GitHub Actions for automated testing"}},{"before":"8c53e4dfacf2c5037fe31d386ce0fb3294a9f898","after":"6556416c24582f38a8177552029afc6ae75ae080","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T18:04:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"ci: Use GitHub secret instead of OIDC","shortMessageHtmlLink":"ci: Use GitHub secret instead of OIDC"}},{"before":"0cdf761a4d842edf482d9778fc7ae345eb10ab46","after":"8c53e4dfacf2c5037fe31d386ce0fb3294a9f898","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T17:49:54.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"ci: add GitHub Actions for automated testing","shortMessageHtmlLink":"ci: add GitHub Actions for automated testing"}},{"before":"978f7de91d2d432afe47bcf38066f60f6922425e","after":"0cdf761a4d842edf482d9778fc7ae345eb10ab46","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T17:46:49.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"ci: add GitHub Actions for automated testing","shortMessageHtmlLink":"ci: add GitHub Actions for automated testing"}},{"before":"260b20e7f99af192429c9ba93806b1db8a9cfddc","after":null,"ref":"refs/heads/feat_eng1","pushedAt":"2024-06-27T17:44:04.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jylee-bcm","name":"Jaeyeon Lee","path":"/jylee-bcm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/172427703?s=80&v=4"}},{"before":null,"after":"260b20e7f99af192429c9ba93806b1db8a9cfddc","ref":"refs/heads/feat_eng1","pushedAt":"2024-06-27T17:38:52.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jylee-bcm","name":"Jaeyeon Lee","path":"/jylee-bcm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/172427703?s=80&v=4"},"commit":{"message":"Removed Multiprocessing from feature.py\n\nThe use of multiprocessing in feature.py caused high memory consumption due to the forking mechanism, making it a bottleneck in the project. To maintain performance, indexing techniques have been applied to optimize query speed as a trade-off.","shortMessageHtmlLink":"Removed Multiprocessing from feature.py"}},{"before":null,"after":"978f7de91d2d432afe47bcf38066f60f6922425e","ref":"refs/heads/feature/github-actions-testing","pushedAt":"2024-06-27T17:37:06.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"ci: add GitHub Actions for automated testing","shortMessageHtmlLink":"ci: add GitHub Actions for automated testing"}},{"before":"002058b830e797b6f4e8427f95991952bb042e3d","after":"0aa6f0d277ac40ab58b5e3822328ee28382cbcaf","ref":"refs/heads/main","pushedAt":"2024-06-26T20:56:40.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"Merge pull request #28 from hyunhwan-bcm/docker-fix\n\nfix Dockerfile for R installation.","shortMessageHtmlLink":"Merge pull request #28 from hyunhwan-bcm/docker-fix"}},{"before":"82ebe647062eea10413d64b759f9345ebf11c664","after":"002058b830e797b6f4e8427f95991952bb042e3d","ref":"refs/heads/main","pushedAt":"2024-06-25T21:31:28.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"Merge pull request #27 from hyunhwan-bcm/update-installation-doc\n\nremove bcftools/bedtools installation in installation.rst","shortMessageHtmlLink":"Merge pull request #27 from hyunhwan-bcm/update-installation-doc"}},{"before":"162ae44442f5cae1cc749fd6740d9fa07c678ab7","after":"82ebe647062eea10413d64b759f9345ebf11c664","ref":"refs/heads/main","pushedAt":"2024-06-25T19:58:08.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"Merge pull request #26 from hyunhwan-bcm/simplify-installation\n\nrefactor: edit dockerfile for automatical bedtools/bcftools installation.","shortMessageHtmlLink":"Merge pull request #26 from hyunhwan-bcm/simplify-installation"}},{"before":"1a6dd7d05e7daaf4fe8aa0c85d70fd4789a43c64","after":"74d2755e3bff5830609420502454a31cc00d09b5","ref":"refs/heads/emptyvep","pushedAt":"2024-06-24T20:42:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jylee-bcm","name":"Jaeyeon Lee","path":"/jylee-bcm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/172427703?s=80&v=4"},"commit":{"message":"Remove error handling on bash scripts","shortMessageHtmlLink":"Remove error handling on bash scripts"}},{"before":null,"after":"1a6dd7d05e7daaf4fe8aa0c85d70fd4789a43c64","ref":"refs/heads/emptyvep","pushedAt":"2024-06-24T19:56:19.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jylee-bcm","name":"Jaeyeon Lee","path":"/jylee-bcm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/172427703?s=80&v=4"},"commit":{"message":"Add error handling and output.json for proc.sh\n\nPreviously, the proc.sh script did not handle errors and continued running\ndespite encountering issues. This update introduces error handling and\ngenerates a machine-readable `output.json` file. This change ensures\nthat errors are properly managed and allows the frontend\nto respond appropriately based on the JSON output. Notably, this update\nhandles the specific case where all variants are filtered out by the blacklist.","shortMessageHtmlLink":"Add error handling and output.json for proc.sh"}},{"before":"83f9a5e0373d6ee06d170e121f5f132df11ec076","after":"162ae44442f5cae1cc749fd6740d9fa07c678ab7","ref":"refs/heads/main","pushedAt":"2024-06-21T14:12:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"arine","name":"Sun-Young Kim","path":"/arine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3880267?s=80&v=4"},"commit":{"message":"docs: Update installation.rst","shortMessageHtmlLink":"docs: Update installation.rst"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEfDCLlwA","startCursor":null,"endCursor":null}},"title":"Activity · LiuzLab/AI_MARRVEL"}