/Hu_RNA_Circuit_Parameterization_ACSSynBio_2015

Code for parameterizing Dynamic Models of RNA Genetic Circuitry described in Hu et al. 'Generating effective models and parameters for RNA genetic circuits' ACS Synthetic Biology, 2015\
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Analysis_Main.m
Analysis_func.m
Data_Histogram_Main.m
Datafile.m
Double_Represion_Call_ODE.m
Double_Repression_Analytical_SSM.m
Double_Repression_Jacobian.m
Double_Repression_Pmatrix.m
Estimation_Main.m
Estimation_fmincon.m
Exp_Data.m
Exp_Data_1LV.txt
Exp_Data_2LV+1LV.txt
Exp_Data_2LV+3LV.txt
Exp_Data_3LV+2LV+1LV.txt
Find_Primary_Guess_Main.m
HandFiting_Main.m
Identifiability.m
Identifiability_N_Design_Main.m
Instruction.txt
Normalize_SSM.m
Opt_datafile.m
README.md
fmincon_constrains.m
guess.txt
senfunction.m

README.md

Hu et al. 'Generating effective models and parameters for RNA genetic circuits' ACS Synthetic Biology, 2015

This code implements the methods outlined in http://dx.doi.org/10.1021/acssynbio.5b00077 . See Instruction.txt for information about running the code.