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Commits on Jul 19, 2011
Commits on Mar 25, 2011
  1. v0.44 Fixed ParallelBLASTing, MEGAN4 program and download support. Ad…

    Lythimus committed Mar 25, 2011
    …ded Parameters for MEGAN. Minscore now computed as percentage.
Commits on Feb 15, 2011
  1. v0.43

    Lythimus committed Feb 15, 2011
  2. v0.43 Support for non-human host organism. Fixed parallel BLAST deter…

    Lythimus committed Feb 15, 2011
    …mination error. Fixed index-building error.
    Close #28.
Commits on Feb 8, 2011
Commits on Feb 6, 2011
Commits on Feb 5, 2011
  1. v0.40 Added Clean and Clobber. Fixed Denovo Assembly and BLAST file j…

    Lythimus committed Feb 5, 2011
    …oining. Fixed Denovo Assembly indexing.
Commits on Feb 1, 2011
  1. v0.39 Fixed file task dynamic dependency resolution. Fixed preference…

    Lythimus committed Feb 1, 2011
    …s file deletion on error.
    Close #45.
  2. v0.38 Fixed Parallel BLASTTAB. Fixed layout of Fixed secon…

    Lythimus committed Feb 1, 2011
    …d MEGAN file task error. Fixed timing scope error. Fixed task reporting error.
Commits on Jan 28, 2011
Commits on Jan 27, 2011
  1. v0.37 BLASTTAB new used instead of Pairwise for efficiency. Timing in…

    Lythimus committed Jan 27, 2011
    …formation logged for all commands. Conditional dust on BLAST. GI to TaxID Nucleotide database installation.
    Close #41. Close #39.
Commits on Jan 23, 2011
  1. v0.36 Parallel BLASTn with no dust. Ability to skip processing steps.…

    Lythimus committed Jan 23, 2011
    … Online link repository.
    Changed double quotes to single quotes when possible for clarity. Beginnings of support for MEGAN 4.0 (soon to exit beta).
Commits on Jan 10, 2011
  1. v0.33. Removed FASTA splitting. BLAST+ using standard format now. Upd…

    Joseph committed Jan 10, 2011
    …ated logging.
    Closes #3. Logging is not only more robust and correct, but is now linked directly with all shell commands executed. Logging information may be added to reports at some point. Provide useful information about data.
Commits on Dec 31, 2010
  1. v0.32. Fixed FASTA splitting issues. Added ability to install softwar…

    Joseph Coco committed Dec 31, 2010
    …e without additional parameters.
    Closes #9. Closes #27.
Commits on Dec 21, 2010
Commits on Dec 20, 2010
  1. v0.30 Splitting FASTA files if results are too large to be processed …

    Lythimus committed Dec 20, 2010
    …by BLAST+ now supported. Removed comparison feature of contig comparison.
    The MEGAN comparison feature was found to  prevent the ability to change LCA parameters, thus FASTA contigs are joined instead.
Commits on Nov 27, 2010
  1. Fixed MEGAN install for OS X. Fixed read length. Fixed file and file

    Lythimus committed Nov 27, 2010
    type over rides via commandline.
Commits on Nov 25, 2010
Commits on Nov 24, 2010
  1. Fixed NT Install, finding files, and post-processor.

    Lythimus committed Nov 24, 2010
    Rewrote the logic to determine if the NT database was installed. Changed
    all find commands to execute locate if it's installed, but if the file
    is not found by locate or if locate is not installed, find is run.
    Reserialization of the configuration files was failing, so I added a
    task which will automatically be executed at the end of each task list
    instead. Not fully tested.
Commits on Nov 23, 2010
  1. fixed minor errors in installations and dependency resolution.

    Lythimus committed Nov 23, 2010
    v0.27. Added semi-colons to ends of some of shell commands. Included ability to
    search system for NT database. Added blastInstall to dependency of ntInstall.