From 1fcc5d155bc1c503326c573cc462d63bd8dadad7 Mon Sep 17 00:00:00 2001
From: Malmahrouqi3 <mohdsaid497566@gmail.com>
Date: Mon, 10 Nov 2025 00:42:48 -0500
Subject: [PATCH 1/4] removed custom FindHDF5.cmake as ig it has been fixed
 already

---
 CMakeLists.txt                     |  4 ---
 toolchain/cmake/cce/FindHDF5.cmake | 39 ------------------------------
 2 files changed, 43 deletions(-)
 delete mode 100644 toolchain/cmake/cce/FindHDF5.cmake

diff --git a/CMakeLists.txt b/CMakeLists.txt
index c588ae47ab..f08799038c 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -99,10 +99,6 @@ find_program(FYPP_EXE fypp REQUIRED)
 link_libraries("${CMAKE_DL_LIBS}")
 set_property(GLOBAL PROPERTY FIND_LIBRARY_USE_LIB64_PATHS ON)
 list(PREPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/toolchain/cmake/regular")
-if (CMAKE_Fortran_COMPILER_ID STREQUAL "Cray")
-    list(PREPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/toolchain/cmake/cce")
-endif()
-
 
 # Compiler Flags: Here, we specify our own compiler flags for both release and
 # debug builds. These include optimization and debug flags, as well as some that
diff --git a/toolchain/cmake/cce/FindHDF5.cmake b/toolchain/cmake/cce/FindHDF5.cmake
deleted file mode 100644
index bb251f875f..0000000000
--- a/toolchain/cmake/cce/FindHDF5.cmake
+++ /dev/null
@@ -1,39 +0,0 @@
-# Attempt to find HDF5
-# URL:  https://www.hdfgroup.org/solutions/hdf5/
-# DOCS: https://cmake.org/cmake/help/latest/command/find_library.html
-#       https://cmake.org/cmake/help/latest/module/FindPackageHandleStandardArgs.html
-
-include(FindPackageHandleStandardArgs)
-
-
-find_path(HDF5_INCLUDE_DIR
-    NAMES         hdf5.h
-    PATH_SUFFIXES hdf5
-)
-
-find_library(HDF5_LIBRARY
-    NAMES         libhdf5 hdf5
-    PATH_SUFFIXES hdf5
-    NAMES_PER_DIR
-)
-
-
-FIND_PACKAGE_HANDLE_STANDARD_ARGS(
-    HDF5
-    REQUIRED_VARS
-        HDF5_LIBRARY
-        HDF5_INCLUDE_DIR
-)
-
-
-if (HDF5_FOUND AND NOT TARGET HDF5::HDF5)
-    set(HDF5_LIBRARIES    "${HDF5_LIBRARY}")
-    set(HDF5_INCLUDE_DIRS "${HDF5_INCLUDE_DIR}")
-
-    add_library(HDF5::HDF5 UNKNOWN IMPORTED)
-
-    set_target_properties(HDF5::HDF5 PROPERTIES
-        IMPORTED_LOCATION             "${HDF5_LIBRARIES}"
-        INTERFACE_INCLUDE_DIRECTORIES "${HDF5_INCLUDE_DIRS}"
-    )
-endif()

From 77402d8c9def340655b78c51f6e820bf96ae636e Mon Sep 17 00:00:00 2001
From: Malmahrouqi3 <mohdsaid497566@gmail.com>
Date: Mon, 10 Nov 2025 01:14:01 -0500
Subject: [PATCH 2/4] changed silo repo to Silo-mo2

---
 toolchain/dependencies/CMakeLists.txt | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/toolchain/dependencies/CMakeLists.txt b/toolchain/dependencies/CMakeLists.txt
index aae2a3cad5..726b10bea9 100644
--- a/toolchain/dependencies/CMakeLists.txt
+++ b/toolchain/dependencies/CMakeLists.txt
@@ -81,8 +81,8 @@ if (MFC_SILO)
         find_package(Git REQUIRED)
 
         ExternalProject_Add(silo
-            GIT_REPOSITORY "https://github.com/LLNL/Silo"
-            GIT_TAG        9af504ef4fb79153e1fbf3bdb75421b6b65f6dc4
+            GIT_REPOSITORY "https://github.com/Malmahrouqi3/Silo-mo2"
+#           GIT_TAG        9af504ef4fb79153e1fbf3bdb75421b6b65f6dc4
             GIT_PROGRESS   ON
             PATCH_COMMAND  "${GIT_EXECUTABLE}" stash
                         && "${GIT_EXECUTABLE}" apply "${CMAKE_SOURCE_DIR}/Silo.patch"

From 21c211c659d0bcdc342e261a3050adeee1c50542 Mon Sep 17 00:00:00 2001
From: Malmahrouqi3 <mohdsaid497566@gmail.com>
Date: Tue, 11 Nov 2025 18:03:36 -0500
Subject: [PATCH 3/4] restored Silo repo to LLNL/Silo

---
 toolchain/dependencies/CMakeLists.txt | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/toolchain/dependencies/CMakeLists.txt b/toolchain/dependencies/CMakeLists.txt
index 726b10bea9..e2c5f87656 100644
--- a/toolchain/dependencies/CMakeLists.txt
+++ b/toolchain/dependencies/CMakeLists.txt
@@ -81,8 +81,7 @@ if (MFC_SILO)
         find_package(Git REQUIRED)
 
         ExternalProject_Add(silo
-            GIT_REPOSITORY "https://github.com/Malmahrouqi3/Silo-mo2"
-#           GIT_TAG        9af504ef4fb79153e1fbf3bdb75421b6b65f6dc4
+            GIT_REPOSITORY "https://github.com/LLNL/Silo"
             GIT_PROGRESS   ON
             PATCH_COMMAND  "${GIT_EXECUTABLE}" stash
                         && "${GIT_EXECUTABLE}" apply "${CMAKE_SOURCE_DIR}/Silo.patch"

From 11dabb113938b021e72a9b1863284735c6731e2d Mon Sep 17 00:00:00 2001
From: "Mohammed S. Al-Mahrouqi"
 <145478595+Malmahrouqi3@users.noreply.github.com>
Date: Wed, 12 Nov 2025 16:41:49 -0500
Subject: [PATCH 4/4] Use main branch instead of master

---
 toolchain/dependencies/CMakeLists.txt | 1 +
 1 file changed, 1 insertion(+)

diff --git a/toolchain/dependencies/CMakeLists.txt b/toolchain/dependencies/CMakeLists.txt
index e2c5f87656..51403524e1 100644
--- a/toolchain/dependencies/CMakeLists.txt
+++ b/toolchain/dependencies/CMakeLists.txt
@@ -82,6 +82,7 @@ if (MFC_SILO)
 
         ExternalProject_Add(silo
             GIT_REPOSITORY "https://github.com/LLNL/Silo"
+            GIT_TAG        main
             GIT_PROGRESS   ON
             PATCH_COMMAND  "${GIT_EXECUTABLE}" stash
                         && "${GIT_EXECUTABLE}" apply "${CMAKE_SOURCE_DIR}/Silo.patch"