diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml new file mode 100644 index 0000000000..9015859124 --- /dev/null +++ b/.github/workflows/ci.yml @@ -0,0 +1,32 @@ +name: CI + +on: + push: + branches: [ master ] + pull_request: + branches: [ master ] + + workflow_dispatch: + +jobs: + CI: + runs-on: ubuntu-latest + + steps: + - uses: actions/checkout@v2 + + - name: Fetch Aptitude Dependencies + run: | + sudo apt install -y tar wget make gcc clang python3 openmpi-* python python-dev python3-dev + + - name: Fetch & Install Dependencies (/dependencies) + run: | + cd dependencies + ./install.sh -j $(nproc) + cd .. + + - name: Build MFC + run: make -j $(nproc) + + - name: Run MFC Tests + run: make test diff --git a/.gitignore b/.gitignore index d614705d7a..97d1269574 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,5 @@ +tags +src/*/tags doc/Doxygen/*/html doc/Doxygen/*logo* doc/Doxygen/*icon* @@ -33,5 +35,4 @@ example_cases/*/silo* example_cases/*/restart* example_cases/*/*.out example_cases/*/binary -lib/fftw-3.3.8 -lib/lapack-3.4.2 +dependencies/*/ \ No newline at end of file diff --git a/AUTHORS b/AUTHORS index 3c6f2a0900..fc077d1f22 100644 --- a/AUTHORS +++ b/AUTHORS @@ -1,58 +1,12 @@ -The MFC is distributed under the GNU GPLv3 license (or later). - -Contributors: S. H. Bryngelson, K. Schmidmayer, V. Coralic, J. Meng, K. Maeda, T. Colonius, J.-S. Spratt, M. Rodriguez - - -Spencer H. Bryngelson --------------------------------------------- -Senior Postdoctoral Scholar -California Institute of Technology -Pasadena, California, USA -Email: spencer@caltech.edu - -Jean-Sebastien Spratt --------------------------------------------- -Graduate Researcher -California Institute of Technology -Pasadena, California, USA - -Mauro Rodriguez --------------------------------------------- -Postdoctoral Scholar -California Institute of Technology -Pasadena, California, USA - -Kevin Schmidmayer --------------------------------------------- -Postdoctoral Scholar -California Institute of Technology -Pasadena, California, USA -Email: kevin.schmidmayer@gmail.com - -Vedran Coralic --------------------------------------------- -Senior Research Scientist -Prime Air, Amazon Inc. -Seattle, Washington, USA -Email: vcoralic@amazon.com - -Jomela Meng --------------------------------------------- -Research Engineer -Bosch Research and Technology Center -Sunnyvale, California, USA -Email: jomela.meng@gmail.com - -Kazuki Maeda --------------------------------------------- -Acting Assistant Professor -University of Washington -Seattle, Washington, USA -Email: kazuki.e.maeda@gmail.com - -Tim Colonius --------------------------------------------- -Frank and Ora Lee Marble Professor of Mechanical Engineering -California Institute of Technology -Pasadena, California, USA -Email: colonius@caltech.edu ++ S. Bryngelson ++ T. Colonius +- V. Coralic +- K. Maeda +- J. Meng ++ A. Radhakrishnan ++ M. Rodriguez +- K. Schmidmayer ++ J. Spratt + +(+) Current developers and maintainers +(-) Past developers diff --git a/CONFIGURE b/CONFIGURE deleted file mode 100644 index 765938a355..0000000000 --- a/CONFIGURE +++ /dev/null @@ -1,72 +0,0 @@ -#> Simulations using MFC depend upon Python, MPI, -#> and FFTW. - -## Python ## -If you do not have Python, it can be installed via -Homebrew on OSX (https://www.brew.sh) as: - $$ brew install python -or compiled via your favorite package manager on Unix -systems. - -## MPI ## -An MPI fortran compiler is required for all systems. -If you do not have one, Homebrew can take care of this -on OSX: - $$ brew install open-mpi -or compiled via another package manager on Unix systems. - -## FFTW ## -If you already have FFTW compiled: - - Specify the location of your FFTW library and - include files in Makefile.user (fftw_lib_dir and - fftw_include_dir) - -If you do not have FFTW compiled, the library and -installer are included in this package. Just: - $$ cd installers - $$ ./install_fftw.sh - -## LAPACK ## -If you already have LAPACK compiled: - - Specify the location of your LAPACK library and - include files in Makefile.user (lapack_lib_dir) - -If you do not have LAPACK compiled, the library and -installer are included in this package. Just: - $$ cd installers - $$ ./install_lapack.sh - -#> Post-processing of parallel data files is not required, -#> but can indeed be handled with the MFC. For this, HDF5 -#> and Silo must be installed - -On OSX, a custom tap for Silo is included in the installers -directory. You can use it via - $$ cd lib - $$ brew install silo.rb -This will install silo and its dependences (including HDF5) -in their usual locations (/usr/local/lib and -/usr/local/include) - -On Unix systems, you can install via a package manager or -from source. On CentOS (also Windows 7), HDF5 -binaries can be found at - https://support.hdfgroup.org/ftp/HDF5/current18/bin/ -Untar this archive in your intended location via - $$ tar -zxf [your HDF5 archive] - -Silo should be downloaded at - https://wci.llnl.gov/simulation/computer-codes/silo/downloads -then - $$ tar -zxf [your Silo archive] - $$ cd [your Silo archive] - $$ ./configure --prefix=[target installation directory] --enable-pythonmodule --enable-optimization --disable-hzip --disable-fpzip --enableportable-binary FC=mpif90 F77=mpif77 -with-hdf5=[your hdf5 directory]/include,/[your hdf5 directory]/lib --disable-silex - $$ make - $$ make install -then add this line to your ~/.bash_profile - export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HOME/[your silo directory]/lib:/[your hdf5 directory]/lib -and - $$ source ~/.bash_profile - -You will then need to modify silo_lib_dir and silo_include_dir in -Makefile.user to point to your silo directory diff --git a/COPYRIGHT b/COPYRIGHT deleted file mode 100644 index 844f7cbfcd..0000000000 --- a/COPYRIGHT +++ /dev/null @@ -1,3 +0,0 @@ -MFC - -Copyright © 2019 Spencer Bryngelson, Kevin Schmidmayer, Vedran Coralic, Jomela Meng, Kazuki Maeda, Timothy Colonius diff --git a/INSTALL b/INSTALL deleted file mode 100644 index 1dfb6fdc67..0000000000 --- a/INSTALL +++ /dev/null @@ -1,18 +0,0 @@ - -READ "CONFIGURE" BEFORE PROCEEDING WITH INSTALL - -Once all dependencies have been installed, the MFC can be built via - - $$ make - -from the MFC directory. This will build all MFC components. Individual -components can be built via - - $$ make [component] - -where [component] is one of "pre_process,simulation,post_process". - -Once this is completed, you can ensure that the software is working -as intended by running - - $$ make test diff --git a/LICENSE b/LICENSE index f288702d2f..c9015c8ba1 100644 --- a/LICENSE +++ b/LICENSE @@ -1,674 +1,9 @@ - GNU GENERAL PUBLIC LICENSE - Version 3, 29 June 2007 + The MIT License (MIT) + Copyright 2021 - Copyright (C) 2007 Free Software Foundation, Inc. - Everyone is permitted to copy and distribute verbatim copies - of this license document, but changing it is not allowed. + Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: - Preamble + The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. - The GNU General Public License is a free, copyleft license for -software and other kinds of works. + THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. 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If not, see . - -Also add information on how to contact you by electronic and paper mail. - - If the program does terminal interaction, make it output a short -notice like this when it starts in an interactive mode: - - Copyright (C) - This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. - This is free software, and you are welcome to redistribute it - under certain conditions; type `show c' for details. - -The hypothetical commands `show w' and `show c' should show the appropriate -parts of the General Public License. Of course, your program's commands -might be different; for a GUI interface, you would use an "about box". - - You should also get your employer (if you work as a programmer) or school, -if any, to sign a "copyright disclaimer" for the program, if necessary. -For more information on this, and how to apply and follow the GNU GPL, see -. - - The GNU General Public License does not permit incorporating your program -into proprietary programs. If your program is a subroutine library, you -may consider it more useful to permit linking proprietary applications with -the library. If this is what you want to do, use the GNU Lesser General -Public License instead of this License. But first, please read -. diff --git a/Makefile b/Makefile index ef95d2b6b2..c5ef0c09bd 100644 --- a/Makefile +++ b/Makefile @@ -2,7 +2,7 @@ include Makefile.user default: all -include installers/Makefile.messages +include Makefile.messages all: pre_process simulation post_process diff --git a/Makefile.in b/Makefile.in index ae7bf2ab7d..beed48d15e 100644 --- a/Makefile.in +++ b/Makefile.in @@ -48,4 +48,4 @@ hd_post_flags = endif # Compiler flags -f90_post_flags = $(f90_flags) $(hd_post_flags) +f90_post_flags = $(f90_flags) -O0 $(hd_post_flags) diff --git a/installers/Makefile.messages b/Makefile.messages similarity index 100% rename from installers/Makefile.messages rename to Makefile.messages diff --git a/Makefile.user b/Makefile.user index 91fa23ca05..1f43e9d270 100644 --- a/Makefile.user +++ b/Makefile.user @@ -9,19 +9,24 @@ FC = mpif90 ### Compiler flags [set according to your compiler] ### #Note: Requires -cpp to enable preprocessor -FFLAGS = -cpp -c -w -freal-4-real-8 -O3 +FFLAGS = -cpp -c -w -Ofast + +# FFLAGS = -cpp -c -w -fast -Minfo=accel +# FFLAGS = -cpp -c -w -freal-4-real-8 -O3 -fallow-argument-mismatch +# FFLAGS = -cpp -c -w -freal-4-real-8 -O3 -pg -fallow-argument-mismatch +# FFLAGS = -cpp -c -w -freal-4-real-8 -O3 # FFLAGS = -cpp -c -w -fimplicit-none -Wall -Wline-truncation -Wcharacter-truncation -Wsurprising -Waliasing -Wimplicit-interface -Wunused-parameter -fwhole-file -fcheck=all -std=f2008 -pedantic -fbacktrace #NOTE: Cray compilers require: -eZ ######### LAPACK library location ######### -lapack_lib_dir = $(MFC_DIR)/lib/lapack-3.4.2/ +lapack_lib_dir = $(MFC_DIR)/dependencies/LAPACK/ ######### FFTW library and include locations ######### ######### Set these to the location of FFTW ######### ## For the FFTW included in the MFC package -fftw_lib_dir = $(MFC_DIR)/lib/fftw-3.3.8/lib -fftw_include_dir = $(MFC_DIR)/lib/fftw-3.3.8/include +fftw_lib_dir = $(MFC_DIR)/dependencies/FFTW3/lib +fftw_include_dir = $(MFC_DIR)/dependencies/FFTW3/include ## Other possible locatins [only use absolute paths] #fftw_lib_dir = /usr/local/lib @@ -32,8 +37,8 @@ fftw_include_dir = $(MFC_DIR)/lib/fftw-3.3.8/include ######### Set these to the location of Silo ######### ######### [ only use absolute paths ] ######### -silo_lib_dir = /usr/local/lib -silo_include_dir = /usr/local/include +silo_lib_dir = $(MFC_DIR)/dependencies/SILO/lib +silo_include_dir = $(MFC_DIR)/dependencies/SILO/include #silo_lib_dir = /home/spencer/packages/silo-4.10.2/lib -#silo_include_dir = /home/spencer/packages/silo-4.10.2/include +#silo_include_dir = /home/spencer/packages/silo-4.10.2/include \ No newline at end of file diff --git a/README.md b/README.md index b871485100..24c831a599 100644 --- a/README.md +++ b/README.md @@ -1,32 +1,30 @@ # Multi-component Flow Code (MFC) -Welcome to the MFC! The MFC is a fully-documented parallel simulation software -for multi-component, multi-phase, and bubbly flows. +[![DOI](https://zenodo.org/badge/doi/10.1016/j.cpc.2020.107396.svg)](http://dx.doi.org/10.1016/j.cpc.2020.107396) +[![YourActionName Actions Status](https://github.com/ComputationalFlowPhysics/MFC-develop/workflows/CI/badge.svg)](https://github.com/ComputationalFlowPhysics/MFC-develop/actions) -# Authors +Welcome to the MFC! +The MFC is a fully-documented parallel simulation software for multi-component, multi-phase, and bubbly flows. - MFC was developed at Caltech by a group of post-doctoral scientists and graduate research students under the supervision of Professor Tim Colonius. - These contributors include: -* Dr. Spencer Bryngelson -* Dr. Kevin Schmidmayer -* Dr. Vedran Coralic -* Dr. Jomela Meng -* Dr. Kazuki Maeda +# Authors - and their contact information is located in the `AUTHORS` file in the source code. +This is the documentation for the MFC (Multicomponent Flow Code). +The MFC is a simulation software for multi-component, multi-phase, and bubbly flows. +MFC was first developed by the Colonius research group at Caltech. +Now it is developed and maintained by the groups of Professors Tim Colonius, Spencer Bryngelson, and Mauro Rodriguez. # Documentation The following codes are documented, please follow the links to see their Doxygen: -* Pre_process -* Simulation -* Post_process +* Pre_process +* Simulation +* Post_process ## User's guide A user's guide is included - here. + here. ## MFC paper @@ -86,95 +84,87 @@ Ph.D. Disserations: -# Installation - - The documents that describe how to configure and install the MFC are located in the - source code as `CONFIGURE` and `INSTALL`. They are also described here. - -## Step 1: Configure and ensure dependencies can be located - - -### Main dependencies: MPI and Python - If you do not have Python, it can be installed via - Homebrew on OSX as: -`brew install python` - - or compiled via your favorite package manager on Unix systems. - - An MPI fortran compiler is required for all systems. - If you do not have one, Homebrew can take care of this - on OSX: -`brew install open-mpi` - - or compiled via another package manager on Unix systems. - -### Simulation code dependency: FFTW +# Simple Installation -If you already have FFTW compiled: -* Specify the location of your FFTW library and - include files in Makefile.user (`fftw_lib_dir` and - `fftw_include_dir`) +To get MFC running as fast as possible without having to configure the +dependencies yourself, you can follow the following steps on most UNIX-like +systems. This method is best suited for development and Continous Integration +(CI) workflows. +To fetch, build, and run MFC and its dependencies on a UNIX-like system, you +must have installed common utilities (Tar, Wget, GNU Make, ...), Python2, +Python3, Python's developement headers and libraries, a C/C++ compiler +((GCC and G++) or Clang), an MPI Fortran compiler +(like [Open MPI](https://www.open-mpi.org/)). Here are some commands for popular +Operating Systems and package managers, -If you do not have FFTW compiler, the library and - installer are included in this package. Just: -`cd installers` -`./install_fftw.sh` - -### Post process code dependency: Silo/HDF5 - - Post-processing of parallel data files is not required, - but can indeed be handled with the MFC. For this, HDF5 - and Silo must be installed - - On OSX, a custom Homebrew tap for Silo is included in the installers - directory. You can use it via -`cd installers` -`brew install silo.rb` - - This will install silo and its dependences (including HDF5) - in their usual locations (`/usr/local/lib` and - `/usr/local/include`) - - On Unix systems, you can install via a package manager or - from source. On CentOS (also Windows 7), HDF5 - binaries can be found here. - - Untar this archive in your intended location via -`tar -zxf [your HDF5 archive]` - - Silo should be downloaded - here, - then -`tar -zxf [your Silo archive]` -`cd [your Silo archive]` -`./configure --prefix=[target installation directory] --enable-pythonmodule --enable-optimization --disable-hzip --disable-fpzip FC=mpif90 F77=mpif77 -with-hdf5=[your hdf5 directory]/include,/[your hdf5 directory]/lib --disable-silex` -`make` -`make install` - - Add the following line to your `~/.bash_profile`: - `export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HOME/[your silo directory]/lib:/[your hdf5 directory]/lib` - - Finally: -`source ~/.bash_profile` - - You will then need to modify `silo_lib_dir` and `silo_include_dir` in - `Makefile.user` to point to your silo directory. - -## Step 2: Build and test - - Once all dependencies have been installed, the MFC can be built via -`make` - - from the MFC directory. This will build all MFC components. Individual - components can be built via -`make [component]` - - where `[component]` is one of `pre_process`, `simulation`, or `post_process`. - - Once this is completed, you can ensure that the software is working - as intended by -`make test` +Package Manager | Suggested Command +--- | --- +[Aptitude](https://wiki.debian.org/Aptitude) (Debian-like) | `sudo apt install tar wget make gcc g++ python3 openmpi-* python python-dev python3-dev` +[Homebrew](https://brew.sh/) (macOS) | `brew install wget make python open-mpi make gcc` + +The following commands fetch and build the required dependencies to to the +`dependencies/` folder within your MFC installation. This should have no impact on your +local installations of these packages. + +``` +cd dependencies +sh ./install.sh -j +cd .. +``` + +You can now run `make -j ` on MFC to build it, and check your +installation by running tests with `make tests`. + +``` +make -j +make tests +``` + +# Advanced Installation + +MFC is split into 3 components with (mostly) layered dependencies. The following +table can be used to resolve the minimal amount of packages you are required to +install and configure depending on your specific use case. + +Codes | Description | Required Packages +----------------- | --------------------------------------- | --- +Pre process Code | "The pre-processor generates initial conditions and spatial grids from the physical patches specified in the Python input file andexports them as binary files to be read by the simulator." [1] |
  • UNIX Utilities
  • GNU Make
  • C/C++ Compiler
  • Fortran MPI Compiler
  • [Python](https://www.python.org/)
    • +Simulation Code | "The simulator, given the initial-condition files generated bythe pre-processor, solves the corresponding governing flowequations with the specified boundary conditions using ourinterface-capturingnumericalmethod." [1] |
    • [FFTW](https://www.fftw.org/)
    • [Lapack](http://www.netlib.org/lapack/)
    +Post process Code | "The post-processor reads simulation data and exports HDF5/Silo databases that include variables and derived variables, asspecifiedintheinputfile." [1] |
    • [HDF5](https://www.hdfgroup.org/solutions/hdf5/)
    • [Silo](https://wci.llnl.gov/simulation/computer-codes/silo)*
    + +[1] + S. H. Bryngelson, K. Schmidmayer, V. Coralic, K. Maeda, J. Meng, T. Colonius (2020) Computer Physics Communications 4655, 107396 + + +*Please note that Silo depends on HDF5. + +Once you have decided on which dependencies you want to install, you can: + +- Build them from source +- Obtain them through your package manager +- Modify and run the [install.sh](dependencies/install.sh) script above + +You can now modify the [Makefile.user](Makefile.user) file at the root of MFC's +source tree to specify the paths to those packages' binaries and header files, +as well as to supply additional command line arguments. + +Variable | Description +------------------ | --- +`FC` | Binary to execute to compile and preprocess Fortran files. +`FFLAGS` | Command-line arguments to supply to your Fortran compiler of choice. +`lapack_lib_dir` | Path to the [Lapack](http://www.netlib.org/lapack/)'s install location. +`fftw_lib_dir` | Path to the parent folder containing [FFTW](https://www.fftw.org/)'s binaries (/lib). +`fftw_include_dir` | Path to the parent folder containing [FFTW](https://www.fftw.org/)'s header files (/include). +`silo_lib_dir` | Path to the parent folder containing [Silo](https://wci.llnl.gov/simulation/computer-codes/silo)'s binaries (/lib). +`silo_include_dir` | Path to the parent folder containing [Silo](https://wci.llnl.gov/simulation/computer-codes/silo)'s header files (/include). + +You can now run `make -j ` on MFC to build it, and check your installation by running tests with `make tests`. + +``` +make -j +make tests +``` # Running @@ -184,43 +174,34 @@ Example Python input files can be found in the `example_cases` directories, and they are called `input.py`. Their contents, and a guide to filling them out, are documented in the user manual. A commented, tutorial script -can also be found in `example_cases/3d_sphbubcollapse`. +can also be found in [example_cases/3d_sphbubcollapse/](example_cases/3D_sphbubcollapse/) MFC can be executed as -`python pre_process` + +``` +python pre_process +``` which will generate the restart and grid files that will be read by the simulation code. Then -`python simulation` + +``` +python simulation +``` will execute the flow solver. The last (optional) step is to post treat the data files and output HDF5 databases for the flow variables via -`python post_process` -Note that the post-processing step -requires installation of Silo and HDF5. +``` +python post_process +``` # License - MFC is free software: you can redistribute it and/or modify it under - the terms of the GNU General Public License, either version 3 - of the License, or any later version. - A copy of the GNU General Public License is included with the MFC, and is - also located at http://www.gnu.org/licenses. - - The MFC is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or - FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. - - Copyright 2019 California Institute of Technology +Copyright 2021. +MFC is under the MIT license (see [LICENSE](LICENSE) file for full text). # Acknowledgements -The development of the MFC was supported in part by multiple past grants from the US Office of -Naval Research (ONR), the US National Institute of -Health (NIH), and the US National Science Foundation (NSF), as well as current ONR grant numbers -N0014-17-1-2676 and N0014-18-1-2625 and NIH grant number 2P01-DK043881. -The computations presented here utilized the Extreme Science -and Engineering Discovery Environment, which is supported under NSF -grant number CTS120005. K.M. acknowledges support from the Funai Foundation -for Information Technology via the Overseas Scholarship. +The development of the MFC was supported in part by multiple current and past grants from the US Office of Naval Research (ONR), the US National Institute of Health (NIH), and the US National Science Foundation (NSF). +MFC computations utilize the Extreme Science and Engineering Discovery Environment (XSEDE), under allocations TG-CTS120005 (PI Colonius) and TG-PHY210084 (PI Bryngelson) and ORNL Summit under allocation CFD154 (PI Bryngelson). diff --git a/RELEASE b/RELEASE deleted file mode 100644 index 01f9385e17..0000000000 --- a/RELEASE +++ /dev/null @@ -1,22 +0,0 @@ - --- Version 1.0 --------------------------------------------------------------- - -We introduce the MFC (multi-component flow code), a CFD-framework for -simulation of compressible, multi-component fluid flows. It has been developed -by the Computational Flow Physics group at the California Institute of -Technology under the guidance of Professor Tim Colonius. The philosophy adopted -for the MFC began as early as with Eric Johnsen in 2006 [Johnsen and Colonius, -JCP 2006], though the principal architecture was developed by Vedran Coralic -[Coralic and Colonius, JCP 2014]. The accuracy and capabilities of the MFC has -been demonstrated through problems including shock-induced collapse of a gas -bubble in a liquid confined in a deformable vessel, that was used to predict -the cavitation-induced damage potential on blood vessel wall in the human body -during shock-wave lithotripsy [Coralic and Colonius, EJMF-B 2013]. The MFC has -subsequently been extended and modernized to simulate various other problems -including shock-induced droplet breakup [Meng and Colonius JFM 2016, 2018], -one-way acoustic generation [Maeda and Colonius 2017], violent collapse of gas -bubbles [Veilleux (Caltech thesis) 2019, Schmidmayer, Bryngelson, Colonius -ArXiv 2019], and cavitating flows [Bryngelson, Schmidmayer, Colonius IJMF -2019]. The release of the MFC is aimed at providing a unified platform on which -end-users can access the code and participate in its development for further -enhancement and modification. The MFC is licensed under the GNU GPLv3. diff --git a/dependencies/install.sh b/dependencies/install.sh new file mode 100755 index 0000000000..f3e454734b --- /dev/null +++ b/dependencies/install.sh @@ -0,0 +1,105 @@ +#!/bin/bash + +declare -a dependencies + +dependencies[0]="FFTW3|http://www.fftw.org/fftw-3.3.10.tar.gz" +dependencies[1]="LAPACK|http://www.netlib.org/lapack/lapack-3.4.2.tgz" +dependencies[2]="HDF5|https://support.hdfgroup.org/ftp/HDF5/current18/src/hdf5-1.8.21.tar.gz" +dependencies[3]="SILO|https://wci.llnl.gov/sites/wci/files/2021-09/silo-4.11.tgz" + +echo Please ensure you have an appropriate build environment +echo Note: This file is meant to be called from within dependencies/ +echo +echo "|------------------------------------------------------" +echo "|--------------- Fetching Dependencies ----------------" +echo "|------------------------------------------------------" +echo "|" + +# For each dependency +for dependency in "${dependencies[@]}" +do + # Extract name and download link + IFS="|" read -r -a arr <<< "${dependency}" + + name="${arr[0]}" + link="${arr[1]}" + + # If we haven't downloaded it before (the directory named $name doesn't exist) + if [ ! -d $(pwd)"/"$name ] + then + archive_filename=$name".tar.gz" + + echo "+ Fetching "$name" @ "$link + + # Download Archive + wget -O $archive_filename -q $link + + mkdir -p $name + + cd $name + echo "| Uncompressing "$archive_filename + + tar --strip-components 1 -xf "../"$archive_filename + cd .. + + echo "| Removing "$archive_filename + + rm $archive_filename + else + echo "+ Skipping "$name" because it has already been downloaded" + fi + + echo "|" +done + +echo ------------------------------------------------------- +echo ---------------- Building Dependencies ---------------- +echo ------------------------------------------------------- +echo + +# FFTW3 +cd FFTW3 + ./configure --prefix=$(pwd) --enable-threads --enable-mpi + + make "$@" + make install +cd .. + +# LAPACK +cd LAPACK + cat ../make_lapack.inc | sed -e s+XXMAKEDIR+$(pwd/..)+g > make.inc + + make "$@" blaslib + make "$@" lapacklib + cp librefblas.a libblas.a +cd .. + +# HDF5 +cd HDF5 + ./configure --prefix=$(pwd) --enable-parallel --enable-fortran --enable-cxx + + make "$@" + make install +cd .. + +# SILO +cd SILO + export PYTHON_CPPFLAGS="$PYTHON_CPPFLAGS $(python3-config --cflags)" + + ./configure --prefix=$(pwd) --enable-pythonmodule --enable-optimization \ + --disable-hzip --disable-fpzip FC=mpif90 F77=mpif77 \ + -with-hdf5=$(pwd)/../HDF5/hdf5/include,$(pwd)/../HDF5/hdf5/lib \ + --disable-silex + + make "$@" + make install +cd .. + +echo "|" +echo "|------------------------------------------------------" +echo "|--------------------- Completed ----------------------" +echo "|------------------------------------------------------" +echo +echo If a build failed, please ensure you have installed +echo the necessary dependencies to build MFC\'s dependencies +echo diff --git a/lib/make_lapack.inc b/dependencies/make_lapack.inc similarity index 100% rename from lib/make_lapack.inc rename to dependencies/make_lapack.inc diff --git a/doc/richardson_MFC.md b/doc/richardson_MFC.md index 385b21513b..ef52fd0d18 100644 --- a/doc/richardson_MFC.md +++ b/doc/richardson_MFC.md @@ -10,8 +10,6 @@ on your local computer * Add your private key to your Richardson keychain * $ cat ~/.ssh/id_rsa.pub | ssh @richardson.caltech.edu 'cat >> ~/.ssh/authorized_keys' - -======= * [Generate](https://docs.joyent.com/public-cloud/getting-started/ssh-keys/generating-an-ssh-key-manually/manually-generating-your-ssh-key-in-mac-os-x) your private key if you don't have one * $ cat ~/.ssh/id_rsa.pub | ssh @richardson.caltech.edu 'cat >> ~/.ssh/authorized_keys' @@ -19,7 +17,6 @@ * Follow the `visit_paraview_richardson.pdf` document * Step 15. under 'visit on richardson' should use the following URL: http://visit.ilight.com/svn/visit/branches/2.9RC/src/svn_bin/bv_support/ ->>>>>>> qbmm * Clone MFC, e.g. * $ git clone https://github.com/ComputationalFlowPhysics/MFC_private.git * $ git status diff --git a/example_cases/1D_bubblescreen/input.py b/example_cases/1D_bubblescreen/input.py index 7aee7a344b..9414542210 100755 --- a/example_cases/1D_bubblescreen/input.py +++ b/example_cases/1D_bubblescreen/input.py @@ -54,7 +54,7 @@ myr0 = R0ref cfl = 0.1 -Nx = 1000 +Nx = 100 Ldomain = 20.E-03 L = Ldomain/x0 dx = L/float(Nx) diff --git a/example_cases/1D_exercise_WENO/input_1material.py b/example_cases/1D_exercise_WENO/input_1material.py new file mode 100755 index 0000000000..2f1ba43521 --- /dev/null +++ b/example_cases/1D_exercise_WENO/input_1material.py @@ -0,0 +1,133 @@ +#!/usr/bin/python +import math + +#Numerical setup +Nx = 250 +dx = 1./(1.*(Nx+1)) + +Tend = 0.03 +Nt = 10 +mydt = Tend/(1.*Nt) + +# Command to navigate between directories +from os import chdir + +# Command to acquire directory path +from os.path import dirname + +# Command to acquire script name and module search path +from sys import argv, path + +# Navigating to script directory +if len(dirname(argv[0])) != 0: chdir(dirname(argv[0])) + +# Adding master_scripts directory to module search path +mfc_dir = '../../src'; path[:0] = [mfc_dir + '/master_scripts'] + +# Command to execute the MFC components +from m_python_proxy import f_execute_mfc_component + +# Serial or parallel computational engine +engine = 'serial' +# ============================================================================== + +# Case Analysis Configuration ================================================== + +# Selecting MFC component +comp_name = argv[1].strip() + +# Configuring case dictionary +case_dict = \ + { \ + # Logistics ================================================ + 'case_dir' : '\'.\'', \ + 'run_time_info' : 'F', \ + 'nodes' : 1, \ + 'ppn' : 1, \ + 'queue' : 'normal', \ + 'walltime' : '24:00:00', \ + 'mail_list' : '', \ + # ========================================================== + \ + # Computational Domain Parameters ========================== + 'x_domain%beg' : 0.E+00, \ + 'x_domain%end' : 1.E+00, \ + 'm' : Nx, \ + 'n' : 0, \ + 'p' : 0, \ + 'dt' : mydt, \ + 't_step_start' : 0, \ + 't_step_stop' : int(Nt), \ + 't_step_save' : int(Nt), \ + # ========================================================== + \ + # Simulation Algorithm Parameters ========================== + 'num_patches' : 1, \ + 'model_eqns' : 2, \ + 'alt_soundspeed' : 'F', \ + 'num_fluids' : 1, \ + 'adv_alphan' : 'T', \ + 'mpp_lim' : 'F', \ + 'mixture_err' : 'F', \ + 'time_stepper' : 1, \ + 'weno_vars' : 2, \ + 'weno_order' : 5, \ + 'weno_eps' : 1.E-16, \ + 'mapped_weno' : 'T', \ + 'null_weights' : 'F', \ + 'mp_weno' : 'F', \ + 'riemann_solver' : 2, \ + 'wave_speeds' : 1, \ + 'avg_state' : 2, \ + 'bc_x%beg' : -1, \ + 'bc_x%end' : -1, \ + # ========================================================== + \ + # Formatted Database Files Structure Parameters ============ + 'format' : 1, \ + 'precision' : 2, \ + 'prim_vars_wrt' :'T', \ + 'parallel_io' :'F', \ + # ========================================================== + + # Patch 1 L ================================================ + # 'patch_icpp(1)%geometry' : 1, \ + # 'patch_icpp(1)%x_centroid' : 0.25, \ + # 'patch_icpp(1)%length_x' : 0.5, \ + # 'patch_icpp(1)%vel(1)' : 0.0, \ + # 'patch_icpp(1)%pres' : 1.0, \ + # 'patch_icpp(1)%alpha_rho(1)' : 1.E+00, \ + # 'patch_icpp(1)%alpha(1)' : 1., \ + # # ========================================================== + + # Patch 2 R ================================================ + # 'patch_icpp(2)%geometry' : 1, \ + # 'patch_icpp(2)%x_centroid' : 0.75, \ + # 'patch_icpp(2)%length_x' : 0.5, \ + # 'patch_icpp(2)%vel(1)' : 0.0, \ + # 'patch_icpp(2)%pres' : 0.1, \ + # 'patch_icpp(2)%alpha_rho(1)' : 0.125E+00, \ + # 'patch_icpp(2)%alpha(1)' : 1., \ + # ========================================================== + + # Patch 1D Analytical ====================================== + 'patch_icpp(1)%geometry' : 15, \ + 'patch_icpp(1)%x_centroid' : 0.5, \ + 'patch_icpp(1)%length_x' : 1.0, \ + 'patch_icpp(1)%vel(1)' : 0.05, \ + 'patch_icpp(1)%pres' : 1.1, \ + 'patch_icpp(1)%alpha_rho(1)' : 1.E+00, \ + 'patch_icpp(1)%alpha(1)' : 1., \ + # ========================================================== + + + # Fluids Physical Parameters =============================== + 'fluid_pp(1)%gamma' : 1.E+00/(1.4-1.E+00), \ + 'fluid_pp(1)%pi_inf' : 0.0, \ + # ========================================================== + } + +# Executing MFC component +f_execute_mfc_component(comp_name, case_dict, mfc_dir, engine) + +# ============================================================================== diff --git a/example_cases/1D_exercise_WENO/input_2material.py b/example_cases/1D_exercise_WENO/input_2material.py new file mode 100755 index 0000000000..c5fdeefa3c --- /dev/null +++ b/example_cases/1D_exercise_WENO/input_2material.py @@ -0,0 +1,117 @@ +#!/usr/bin/python +import math + +#Numerical setup +Nx = 2500 +dx = 1./(1.*(Nx+1)) + +Tend = 0.03 +Nt = 50 +mydt = Tend/(1.*Nt) + +# Command to navigate between directories +from os import chdir + +# Command to acquire directory path +from os.path import dirname + +# Command to acquire script name and module search path +from sys import argv, path + +# Navigating to script directory +if len(dirname(argv[0])) != 0: chdir(dirname(argv[0])) + +# Adding master_scripts directory to module search path +mfc_dir = '../../src'; path[:0] = [mfc_dir + '/master_scripts'] + +# Command to execute the MFC components +from m_python_proxy import f_execute_mfc_component + +# Serial or parallel computational engine +engine = 'serial' +# ============================================================================== + +# Case Analysis Configuration ================================================== + +# Selecting MFC component +comp_name = argv[1].strip() + +# Configuring case dictionary +case_dict = \ + { \ + # Logistics ================================================ + 'case_dir' : '\'.\'', \ + 'run_time_info' : 'F', \ + 'nodes' : 1, \ + 'ppn' : 1, \ + 'queue' : 'normal', \ + 'walltime' : '24:00:00', \ + 'mail_list' : '', \ + # ========================================================== + \ + # Computational Domain Parameters ========================== + 'x_domain%beg' : 0.E+00, \ + 'x_domain%end' : 1.E+00, \ + 'm' : Nx, \ + 'n' : 0, \ + 'p' : 0, \ + 'dt' : mydt, \ + 't_step_start' : 0, \ + 't_step_stop' : int(Nt), \ + 't_step_save' : int(Nt), \ + # ========================================================== + \ + # Simulation Algorithm Parameters ========================== + 'debug_weno' : 'T', \ + 'num_patches' : 1, \ + 'model_eqns' : 2, \ + 'alt_soundspeed' : 'F', \ + 'num_fluids' : 2, \ + 'adv_alphan' : 'T', \ + 'mpp_lim' : 'F', \ + 'mixture_err' : 'F', \ + 'time_stepper' : 1, \ + 'weno_vars' : 2, \ + 'weno_order' : 5, \ + 'weno_eps' : 1.E-16, \ + 'mapped_weno' : 'T', \ + 'null_weights' : 'F', \ + 'mp_weno' : 'F', \ + 'riemann_solver' : 2, \ + 'wave_speeds' : 1, \ + 'avg_state' : 2, \ + 'bc_x%beg' : -1, \ + 'bc_x%end' : -1, \ + # ========================================================== + \ + # Formatted Database Files Structure Parameters ============ + 'format' : 1, \ + 'precision' : 2, \ + 'prim_vars_wrt' :'T', \ + 'parallel_io' :'F', \ + # ========================================================== + + # Patch 1D Analytical ====================================== + 'patch_icpp(1)%geometry' : 15, \ + 'patch_icpp(1)%x_centroid' : 0.5, \ + 'patch_icpp(1)%length_x' : 1.0, \ + 'patch_icpp(1)%vel(1)' : 0.05, \ + 'patch_icpp(1)%pres' : 1.1, \ + 'patch_icpp(1)%alpha_rho(1)' : 1.0, \ + 'patch_icpp(1)%alpha_rho(2)' : 2.0, \ + 'patch_icpp(1)%alpha(1)' : 1.0, \ + 'patch_icpp(1)%alpha(2)' : 0.0, \ + # ========================================================== + + # Fluids Physical Parameters =============================== + 'fluid_pp(1)%gamma' : 1.E+00/(1.4-1.E+00), \ + 'fluid_pp(1)%pi_inf' : 0.0, \ + 'fluid_pp(2)%gamma' : 1.E+00/(1.4-1.E+00), \ + 'fluid_pp(2)%pi_inf' : 0.0, \ + # ========================================================== + } + +# Executing MFC component +f_execute_mfc_component(comp_name, case_dict, mfc_dir, engine) + +# ============================================================================== diff --git a/example_cases/1D_exercise_WENO/pre_process.inp b/example_cases/1D_exercise_WENO/pre_process.inp new file mode 100644 index 0000000000..7b1d0eb87c --- /dev/null +++ b/example_cases/1D_exercise_WENO/pre_process.inp @@ -0,0 +1,28 @@ +&user_inputs +mpp_lim = F +x_domain%beg = 0.0 +patch_icpp(1)%alpha_rho(1) = 1.0 +adv_alphan = T +x_domain%end = 1.0 +m = 250 +precision = 2 +n = 0 +bc_x%beg = -1 +num_patches = 1 +fluid_pp(1)%gamma = 2.5 +p = 0 +num_fluids = 1 +parallel_io = F +patch_icpp(1)%length_x = 1.0 +weno_order = 5 +model_eqns = 2 +patch_icpp(1)%x_centroid = 0.5 +fluid_pp(1)%pi_inf = 0.0 +case_dir = '.' +patch_icpp(1)%vel(1) = 0.05 +patch_icpp(1)%pres = 1.1 +patch_icpp(1)%alpha(1) = 1.0 +patch_icpp(1)%geometry = 15 +bc_x%end = -1 +&end +/ diff --git a/example_cases/1D_exercise_WENO/run.sh b/example_cases/1D_exercise_WENO/run.sh new file mode 100755 index 0000000000..a1e9dfdfd7 --- /dev/null +++ b/example_cases/1D_exercise_WENO/run.sh @@ -0,0 +1,12 @@ +#!/bin/bash +# module purge +# module load lsf-tools/2.0 DefApps nvhpc/21.9 spectrum-mpi/10.3.1.2-20200121 cuda/11.2.0 + + + +export PGI_ACC_TIME=0 +export PGI_ACC_NOTIFY= +export PGI_ACC_DEBUG= +jsrun -r1 -a1 -c1 -g1 ../../src/pre_process_code/pre_process +time jsrun -r1 -a1 -c1 -g1 ../../src/simulation_code/simulation + diff --git a/example_cases/1D_exercise_WENO/simulation.inp b/example_cases/1D_exercise_WENO/simulation.inp new file mode 100644 index 0000000000..ab04fb6210 --- /dev/null +++ b/example_cases/1D_exercise_WENO/simulation.inp @@ -0,0 +1,34 @@ +&user_inputs +fluid_pp(1)%gamma = 2.5 +p = 0 +num_fluids = 1 +mpp_lim = F +n = 0 +mapped_weno = T +t_step_save = 10 +parallel_io = F +mixture_err = F +weno_order = 5 +run_time_info = F +weno_vars = 2 +model_eqns = 2 +fluid_pp(1)%pi_inf = 0.0 +adv_alphan = T +case_dir = '.' +null_weights = F +weno_eps = 1e-16 +m = 250 +dt = 0.0003 +alt_soundspeed = F +wave_speeds = 1 +precision = 2 +mp_weno = F +t_step_stop = 100 +t_step_start = 0 +bc_x%beg = -1 +time_stepper = 1 +bc_x%end = -1 +riemann_solver = 2 +avg_state = 2 +&end +/ diff --git a/example_cases/2D_exercise/pre_process.inp b/example_cases/2D_exercise/pre_process.inp new file mode 100644 index 0000000000..ad26b2c4ff --- /dev/null +++ b/example_cases/2D_exercise/pre_process.inp @@ -0,0 +1,42 @@ +&user_inputs +mpp_lim = F +x_domain%beg = 0.0 +y_domain%beg = 0.0 +z_domain%beg = 0.0 +patch_icpp(1)%alpha_rho(1) = 1.0 +adv_alphan = T +x_domain%end = 1.0 +y_domain%end = 1.0 +z_domain%end = 1.0 +m = 100 +precision = 2 +n = 70 +bc_x%beg = -1 +bc_y%beg = -1 +bc_z%beg = -1 +num_patches = 1 +fluid_pp(1)%gamma = 2.5 +p = 60 +num_fluids = 1 +parallel_io = F +patch_icpp(1)%length_x = 1.0 +patch_icpp(1)%length_y = 1.0 +patch_icpp(1)%length_z = 1.0 +weno_order = 5 +model_eqns = 2 +patch_icpp(1)%x_centroid = 0.5 +patch_icpp(1)%y_centroid = 0.5 +patch_icpp(1)%z_centroid = 0.5 +fluid_pp(1)%pi_inf = 0.0 +case_dir = '.' +patch_icpp(1)%vel(1) = 0.05 +patch_icpp(1)%vel(2) = 0.05 +patch_icpp(1)%vel(3) = 0.05 +patch_icpp(1)%pres = 1.1 +patch_icpp(1)%alpha(1) = 1.0 +patch_icpp(1)%geometry = 13 +bc_x%end = -1 +bc_y%end = -1 +bc_z%end = -1 +&end +/ diff --git a/example_cases/2D_exercise/run.sh b/example_cases/2D_exercise/run.sh new file mode 100755 index 0000000000..a1e9dfdfd7 --- /dev/null +++ b/example_cases/2D_exercise/run.sh @@ -0,0 +1,12 @@ +#!/bin/bash +# module purge +# module load lsf-tools/2.0 DefApps nvhpc/21.9 spectrum-mpi/10.3.1.2-20200121 cuda/11.2.0 + + + +export PGI_ACC_TIME=0 +export PGI_ACC_NOTIFY= +export PGI_ACC_DEBUG= +jsrun -r1 -a1 -c1 -g1 ../../src/pre_process_code/pre_process +time jsrun -r1 -a1 -c1 -g1 ../../src/simulation_code/simulation + diff --git a/example_cases/2D_exercise/simulation.inp b/example_cases/2D_exercise/simulation.inp new file mode 100644 index 0000000000..ba5b68b60e --- /dev/null +++ b/example_cases/2D_exercise/simulation.inp @@ -0,0 +1,38 @@ +&user_inputs +fluid_pp(1)%gamma = 2.5 +p = 60 +num_fluids = 1 +mpp_lim = F +n = 70 +mapped_weno = T +t_step_save = 10 +parallel_io = F +mixture_err = F +weno_order = 5 +run_time_info = F +weno_vars = 2 +model_eqns = 2 +fluid_pp(1)%pi_inf = 0.0 +adv_alphan = T +case_dir = '.' +null_weights = F +weno_eps = 1e-16 +m = 100 +dt = 0.0003 +alt_soundspeed = F +wave_speeds = 1 +precision = 2 +mp_weno = F +t_step_stop = 100 +t_step_start = 0 +bc_x%beg = -1 +bc_y%beg = -1 +bc_z%beg = -1 +time_stepper = 1 +bc_x%end = -1 +bc_y%end = -1 +bc_z%end = -1 +riemann_solver = 2 +avg_state = 2 +&end + diff --git a/example_cases/3D_exercise/pre_process.inp b/example_cases/3D_exercise/pre_process.inp new file mode 100644 index 0000000000..ad26b2c4ff --- /dev/null +++ b/example_cases/3D_exercise/pre_process.inp @@ -0,0 +1,42 @@ +&user_inputs +mpp_lim = F +x_domain%beg = 0.0 +y_domain%beg = 0.0 +z_domain%beg = 0.0 +patch_icpp(1)%alpha_rho(1) = 1.0 +adv_alphan = T +x_domain%end = 1.0 +y_domain%end = 1.0 +z_domain%end = 1.0 +m = 100 +precision = 2 +n = 70 +bc_x%beg = -1 +bc_y%beg = -1 +bc_z%beg = -1 +num_patches = 1 +fluid_pp(1)%gamma = 2.5 +p = 60 +num_fluids = 1 +parallel_io = F +patch_icpp(1)%length_x = 1.0 +patch_icpp(1)%length_y = 1.0 +patch_icpp(1)%length_z = 1.0 +weno_order = 5 +model_eqns = 2 +patch_icpp(1)%x_centroid = 0.5 +patch_icpp(1)%y_centroid = 0.5 +patch_icpp(1)%z_centroid = 0.5 +fluid_pp(1)%pi_inf = 0.0 +case_dir = '.' +patch_icpp(1)%vel(1) = 0.05 +patch_icpp(1)%vel(2) = 0.05 +patch_icpp(1)%vel(3) = 0.05 +patch_icpp(1)%pres = 1.1 +patch_icpp(1)%alpha(1) = 1.0 +patch_icpp(1)%geometry = 13 +bc_x%end = -1 +bc_y%end = -1 +bc_z%end = -1 +&end +/ diff --git a/example_cases/3D_exercise/run.sh b/example_cases/3D_exercise/run.sh new file mode 100755 index 0000000000..a1e9dfdfd7 --- /dev/null +++ b/example_cases/3D_exercise/run.sh @@ -0,0 +1,12 @@ +#!/bin/bash +# module purge +# module load lsf-tools/2.0 DefApps nvhpc/21.9 spectrum-mpi/10.3.1.2-20200121 cuda/11.2.0 + + + +export PGI_ACC_TIME=0 +export PGI_ACC_NOTIFY= +export PGI_ACC_DEBUG= +jsrun -r1 -a1 -c1 -g1 ../../src/pre_process_code/pre_process +time jsrun -r1 -a1 -c1 -g1 ../../src/simulation_code/simulation + diff --git a/example_cases/3D_exercise/simulation.inp b/example_cases/3D_exercise/simulation.inp new file mode 100644 index 0000000000..ba5b68b60e --- /dev/null +++ b/example_cases/3D_exercise/simulation.inp @@ -0,0 +1,38 @@ +&user_inputs +fluid_pp(1)%gamma = 2.5 +p = 60 +num_fluids = 1 +mpp_lim = F +n = 70 +mapped_weno = T +t_step_save = 10 +parallel_io = F +mixture_err = F +weno_order = 5 +run_time_info = F +weno_vars = 2 +model_eqns = 2 +fluid_pp(1)%pi_inf = 0.0 +adv_alphan = T +case_dir = '.' +null_weights = F +weno_eps = 1e-16 +m = 100 +dt = 0.0003 +alt_soundspeed = F +wave_speeds = 1 +precision = 2 +mp_weno = F +t_step_stop = 100 +t_step_start = 0 +bc_x%beg = -1 +bc_y%beg = -1 +bc_z%beg = -1 +time_stepper = 1 +bc_x%end = -1 +bc_y%end = -1 +bc_z%end = -1 +riemann_solver = 2 +avg_state = 2 +&end + diff --git a/installers/install_fftw.sh b/installers/install_fftw.sh deleted file mode 100755 index eae587b115..0000000000 --- a/installers/install_fftw.sh +++ /dev/null @@ -1,11 +0,0 @@ -#!/bin/bash - -cd ../lib - -tar -zxf fftw-3.3.8.tar.gz -cd fftw-3.3.8 - lib_dir=$(pwd) - ./configure --prefix=$lib_dir - make - make install -cd .. diff --git a/installers/install_lapack.sh b/installers/install_lapack.sh deleted file mode 100755 index 23b3c43cbd..0000000000 --- a/installers/install_lapack.sh +++ /dev/null @@ -1,15 +0,0 @@ -#!/bin/bash - -cd ../ -homedir=$(pwd) -cd lib - -library=lapack-3.4.2 -tar -zxf $library'.tgz' -cd $library - # cp ../make_lapack.inc make.inc - cat ../make_lapack.inc | sed -e s+XXMAKEDIR+$homedir+g > make.inc - make blaslib - make lapacklib - make install -cd .. diff --git a/lib/fftw-3.3.8.tar.gz b/lib/fftw-3.3.8.tar.gz deleted file mode 100644 index 21eb2b3ca2..0000000000 Binary files a/lib/fftw-3.3.8.tar.gz and /dev/null differ diff --git a/lib/lapack-3.4.2.tgz b/lib/lapack-3.4.2.tgz deleted file mode 100644 index 779d4e9688..0000000000 Binary files a/lib/lapack-3.4.2.tgz and /dev/null differ diff --git a/lib/silo.rb b/lib/silo.rb deleted file mode 100644 index 73b3c3787b..0000000000 --- a/lib/silo.rb +++ /dev/null @@ -1,69 +0,0 @@ -class Silo < Formula - desc "LLNL mesh and field Silo I/O library. Allows creating databases for VisIt." - homepage "https://wci.llnl.gov/simulation/computer-codes/silo" - url "https://wci.llnl.gov/content/assets/docs/simulation/computer-codes/silo/silo-4.10.2/silo-4.10.2-bsd.tar.gz" - sha256 "4b901dfc1eb4656e83419a6fde15a2f6c6a31df84edfad7f1dc296e01b20140e" - revision 4 - - bottle do - sha256 "624de8ce662b6ce4f51cd100faf7c212ea7ad745ee66965c6cb0c045dddc830d" => :sierra - sha256 "0c11bc3e37dfd10984a1475a0f6c15714c58e955a28395e5548f29d2dd8d4e0b" => :el_capitan - sha256 "392947bac24a93a7a5e70ddeb6825ada3cc97de9c7a1cb7a2b0d9806a91b5ac0" => :yosemite - sha256 "b4cc0e28f1e29c8c2cf51b82787ec6bb1bf80310c775ad796f48a704e06e9d4c" => :x86_64_linux - end - - option "with-static", "Build as static instead of dynamic library" - option "without-lite-headers", "Do not install PDB lite headers" - - depends_on :x11 => :optional - depends_on "gcc" if OS.mac? # for gfortran - depends_on "readline" - depends_on "hdf5" => :recommended - - def install - args = ["--prefix=#{prefix}"] - args << "--enable-optimization" - args << "--with-zlib" - args << "--enable-install-lite-headers" if build.with? "lite-headers" - args << "--enable-shared" if build.without? "static" - args << "--enable-x" if build.with? "x11" - args << "--with-hdf5=#{Formula["hdf5"].opt_prefix}" if build.with? "hdf5" - - ENV.append "LDFLAGS", "-L#{Formula["readline"].opt_lib} -lreadline" - system "./configure", *args - system "make", "install" - if build.with? "hdf5" - rm lib/"libsiloh5.settings" - else - rm lib/"libsilo.settings" - end - end - - test do - (testpath/"test.c").write <<~EOS - #include - - int main(void) - { - DBfile *silodb; - silodb = DBCreate("test.silo", DB_CLOBBER, DB_LOCAL, NULL, DB_PDB); - if (!silodb) - return 1; - - DBClose(silodb); - return 0; - } - EOS - test_args = ["test.c", "-I#{opt_include}", "-L#{opt_lib}", "-o", "test"] - if build.with? "hdf5" - test_args << "-lsiloh5" - test_args << "-L#{Formula["hdf5"].opt_lib}" - test_args << "-lhdf5" - else - test_args << "-lsilo" - end - test_args << "-lm" - system ENV.cc, *test_args - system "./test" - end -end diff --git a/src/master_scripts/m_mpi_proxy.f90 b/src/master_scripts/m_mpi_proxy.f90 index fb8f51037e..3f9d96dcab 100755 --- a/src/master_scripts/m_mpi_proxy.f90 +++ b/src/master_scripts/m_mpi_proxy.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_mpi_proxy.f90 !! @brief Contains module m_mpi_proxy diff --git a/src/master_scripts/m_python_proxy.py b/src/master_scripts/m_python_proxy.py index fc9d8ca46e..241e959c83 100755 --- a/src/master_scripts/m_python_proxy.py +++ b/src/master_scripts/m_python_proxy.py @@ -1,30 +1,5 @@ #!/usr/bin/env python2 -## __ _______________ -## / |/ / ____/ ____/ -## / /|_/ / /_ / / -## / / / / __/ / /___ -## /_/ /_/_/ \____/ -## -## This file is part of MFC. -## -## MFC is the legal property of its developers, whose names -## are listed in the copyright file included with this source -## distribution. -## -## MFC is free software: you can redistribute it and/or modify -## it under the terms of the GNU General Public License as published -## by the Free Software Foundation, either version 3 of the license -## or any later version. -## -## MFC is distributed in the hope that it will be useful, -## but WITHOUT ANY WARRANTY; without even the implied warranty of -## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -## GNU General Public License for more details. -## -## You should have received a copy of the GNU General Public License -## along with MFC (LICENSE). -## If not, see . ## @brief This module contains the parameters and functions necessary to ## establish a workable proxy between Python scripting and the MFC. diff --git a/src/master_scripts/m_silo_proxy.f90 b/src/master_scripts/m_silo_proxy.f90 index 5934d02d45..19b2aab24a 100755 --- a/src/master_scripts/m_silo_proxy.f90 +++ b/src/master_scripts/m_silo_proxy.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_mpi_proxy.f90 !! @brief Contains module m_silo_proxy.f90 diff --git a/src/master_scripts/p_case.py b/src/master_scripts/p_case.py index ea8ead61a6..ecd55d4c5f 100755 --- a/src/master_scripts/p_case.py +++ b/src/master_scripts/p_case.py @@ -1,30 +1,5 @@ #!/usr/bin/python -## __ _______________ -## / |/ / ____/ ____/ -## / /|_/ / /_ / / -## / / / / __/ / /___ -## /_/ /_/_/ \____/ -## -## This file is part of MFC. -## -## MFC is the legal property of its developers, whose names -## are listed in the copyright file included with this source -## distribution. -## -## MFC is free software: you can redistribute it and/or modify -## it under the terms of the GNU General Public License as published -## by the Free Software Foundation, either version 3 of the license -## or any later version. -## -## MFC is distributed in the hope that it will be useful, -## but WITHOUT ANY WARRANTY; without even the implied warranty of -## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -## GNU General Public License for more details. -## -## You should have received a copy of the GNU General Public License -## along with MFC (LICENSE). -## If not, see . ## @brief The following script describes the steps necessary to configure ## and interconnect the pre-process, simulation and post-process diff --git a/src/post_process_code/m_compile_specific.f90 b/src/post_process_code/m_compile_specific.f90 index 9d099cf4c7..b22657e04d 100755 --- a/src/post_process_code/m_compile_specific.f90 +++ b/src/post_process_code/m_compile_specific.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_compile_specific.f90 !! @brief Contains module m_compile_specific diff --git a/src/post_process_code/m_data_input.f90 b/src/post_process_code/m_data_input.f90 index 3987ef4d20..cac203c694 100755 --- a/src/post_process_code/m_data_input.f90 +++ b/src/post_process_code/m_data_input.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_data_input.f90 !> @brief Contains module m_data_input diff --git a/src/post_process_code/m_data_output.f90 b/src/post_process_code/m_data_output.f90 index 132b98ca43..bd25ba8e29 100755 --- a/src/post_process_code/m_data_output.f90 +++ b/src/post_process_code/m_data_output.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_data_output.f90 !! @brief Contains module m_data_output diff --git a/src/post_process_code/m_derived_types.f90 b/src/post_process_code/m_derived_types.f90 index 56ac4c52d6..655ac2bf80 100755 --- a/src/post_process_code/m_derived_types.f90 +++ b/src/post_process_code/m_derived_types.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_derived_types.f90 !! @brief Contains module m_derived_types diff --git a/src/post_process_code/m_derived_variables.f90 b/src/post_process_code/m_derived_variables.f90 index fc52495402..71430f51f7 100755 --- a/src/post_process_code/m_derived_variables.f90 +++ b/src/post_process_code/m_derived_variables.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_derived_variables.f90 !! @brief Contains module m_derived_variables diff --git a/src/post_process_code/m_fftw.f90 b/src/post_process_code/m_fftw.f90 index 56330c44ed..96d8d7405f 100755 --- a/src/post_process_code/m_fftw.f90 +++ b/src/post_process_code/m_fftw.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_fftw.f90 !! @brief Contains module m_fftw diff --git a/src/post_process_code/m_global_parameters.f90 b/src/post_process_code/m_global_parameters.f90 index 15bc613a99..c170f1e37c 100755 --- a/src/post_process_code/m_global_parameters.f90 +++ b/src/post_process_code/m_global_parameters.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_global_parameters.f90 !! @brief Contains module m_global_parameters diff --git a/src/post_process_code/m_mpi_proxy.f90 b/src/post_process_code/m_mpi_proxy.f90 index d30e7dd266..2da56a18bf 100755 --- a/src/post_process_code/m_mpi_proxy.f90 +++ b/src/post_process_code/m_mpi_proxy.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_mpi_proxy.f90 !! @brief Contains module m_mpi_proxy diff --git a/src/post_process_code/m_start_up.f90 b/src/post_process_code/m_start_up.f90 index 19d8bc7962..5ac08ed53d 100755 --- a/src/post_process_code/m_start_up.f90 +++ b/src/post_process_code/m_start_up.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_start_up.f90 !! @brief Contains module m_start_up diff --git a/src/post_process_code/m_variables_conversion.f90 b/src/post_process_code/m_variables_conversion.f90 index 50ea7f4cb8..7da8ca6f53 100755 --- a/src/post_process_code/m_variables_conversion.f90 +++ b/src/post_process_code/m_variables_conversion.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_variables_conversion.f90 !! @brief Contains module m_variables_conversion diff --git a/src/post_process_code/p_main.f90 b/src/post_process_code/p_main.f90 index 1942e46a20..80db564330 100755 --- a/src/post_process_code/p_main.f90 +++ b/src/post_process_code/p_main.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file p_main.f90 !! @brief Contains program p_main diff --git a/src/pre_process_code/m_compile_specific.f90 b/src/pre_process_code/m_compile_specific.f90 index 9d099cf4c7..b22657e04d 100755 --- a/src/pre_process_code/m_compile_specific.f90 +++ b/src/pre_process_code/m_compile_specific.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_compile_specific.f90 !! @brief Contains module m_compile_specific diff --git a/src/pre_process_code/m_data_output.f90 b/src/pre_process_code/m_data_output.f90 index 1642b3c93d..55febbcfde 100755 --- a/src/pre_process_code/m_data_output.f90 +++ b/src/pre_process_code/m_data_output.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_data_output.f90 !! @brief Contains module m_data_output diff --git a/src/pre_process_code/m_derived_types.f90 b/src/pre_process_code/m_derived_types.f90 index 4d2bf38bc9..c9a717d2fb 100755 --- a/src/pre_process_code/m_derived_types.f90 +++ b/src/pre_process_code/m_derived_types.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_derived_types.f90 !! @brief Contains module m_derived_types diff --git a/src/pre_process_code/m_eigen.f90 b/src/pre_process_code/m_eigen.f90 index 88b54c6804..4ea9157c6e 100644 --- a/src/pre_process_code/m_eigen.f90 +++ b/src/pre_process_code/m_eigen.f90 @@ -1,3 +1,4 @@ + MODULE m_eigen ! Dependencies ============================================================= diff --git a/src/pre_process_code/m_global_parameters.f90 b/src/pre_process_code/m_global_parameters.f90 index 7db50c8288..25c76bb7b5 100755 --- a/src/pre_process_code/m_global_parameters.f90 +++ b/src/pre_process_code/m_global_parameters.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_global_parameters.f90 !! @brief Contains module m_global_parameters diff --git a/src/pre_process_code/m_grid.f90 b/src/pre_process_code/m_grid.f90 index ad5db3cca0..2e8b1b734d 100755 --- a/src/pre_process_code/m_grid.f90 +++ b/src/pre_process_code/m_grid.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_grid.f90 !! @brief Contains module m_grid diff --git a/src/pre_process_code/m_initial_condition.f90 b/src/pre_process_code/m_initial_condition.f90 index e2d514eab8..f2325eb1ec 100755 --- a/src/pre_process_code/m_initial_condition.f90 +++ b/src/pre_process_code/m_initial_condition.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_initial_condition.f90 !! @brief Contains module m_initial_condition @@ -1745,9 +1719,9 @@ SUBROUTINE s_1D_analytical(patch_id) ! --------------------------------- !IF (model_eqns == 4) THEN !reassign density !IF (num_fluids == 1) THEN - q_prim_vf(1)%sf(i,0,0) = & - (((q_prim_vf(E_idx)%sf(i,0,0) + pi_inf)/(pref + pi_inf))**(1d0/lit_gamma)) * & - rhoref*(1d0-q_prim_vf(alf_idx)%sf(i,0,0)) + ! q_prim_vf(1)%sf(i,0,0) = & + ! (((q_prim_vf(E_idx)%sf(i,0,0) + pi_inf)/(pref + pi_inf))**(1d0/lit_gamma)) * & + ! rhoref*(1d0-q_prim_vf(alf_idx)%sf(i,0,0)) !END IF !ELSE IF (model_eqns == 2) THEN !can manually adjust density here @@ -1889,12 +1863,12 @@ SUBROUTINE s_2D_analytical(patch_id) ! --------------------------------- !what variables to alter !x-y bump in pressure - !q_prim_vf(E_idx)%sf(i,j,0) = q_prim_vf(E_idx)%sf(i,j,0) * & - ! ( 1d0 + 0.2d0*dexp(-1d0*((x_cb(i)-x_centroid)**2.d0 + (y_cb(j)-y_centroid)**2.d0)/(2.d0*0.005d0)) ) + q_prim_vf(E_idx)%sf(i,j,0) = q_prim_vf(E_idx)%sf(i,j,0) * & + ( 1d0 + 0.2d0*dexp(-1d0*((x_cb(i)-x_centroid)**2.d0 + (y_cb(j)-y_centroid)**2.d0)/(2.d0*0.005d0)) ) !x-bump - q_prim_vf(E_idx)%sf(i,j,0) = q_prim_vf(E_idx)%sf(i,j,0) * & - ( 1d0 + 0.2d0*dexp(-1d0*((x_cb(i)-x_centroid)**2.d0)/(2.d0*0.005d0)) ) + ! q_prim_vf(E_idx)%sf(i,j,0) = q_prim_vf(E_idx)%sf(i,j,0) * & + ! ( 1d0 + 0.2d0*dexp(-1d0*((x_cb(i)-x_centroid)**2.d0)/(2.d0*0.005d0)) ) !bump in void fraction !q_prim_vf(adv_idx%beg)%sf(i,j,0) = q_prim_vf(adv_idx%beg)%sf(i,j,0) * & @@ -1905,9 +1879,9 @@ SUBROUTINE s_2D_analytical(patch_id) ! --------------------------------- ! ( 1d0 + 0.2d0*exp(-1d0*((x_cb(i)-x_centroid)**2.d0 + (y_cb(j)-y_centroid)**2.d0)/(2.d0*0.005d0)) ) !reassign density - q_prim_vf(1)%sf(i,j,0) = & - (((q_prim_vf(E_idx)%sf(i,j,0) + pi_inf)/(pref + pi_inf))**(1d0/lit_gamma)) * & - rhoref*(1d0-q_prim_vf(alf_idx)%sf(i,j,0)) +! q_prim_vf(1)%sf(i,j,0) = & +! (((q_prim_vf(E_idx)%sf(i,j,0) + pi_inf)/(pref + pi_inf))**(1d0/lit_gamma)) * & +! rhoref*(1d0-q_prim_vf(alf_idx)%sf(i,j,0)) ! ================================================================================ @@ -2028,24 +2002,24 @@ SUBROUTINE s_3D_analytical(patch_id) ! --------------------------------- q_prim_vf(E_idx)%sf(i,j,k) = q_prim_vf(E_idx)%sf(i,j,k) * & ( 1d0 + 0.2d0*exp(-1d0 * & ((x_cb(i)-x_centroid)**2.d0 + (y_cb(j)-y_centroid)**2.d0 + (z_cb(k)-z_centroid)**2.d0) & - /(2.d0*0.005d0)) ) + /(2.d0*0.5d0)) ) !bump in void fraction - q_prim_vf(adv_idx%beg)%sf(i,j,k) = q_prim_vf(adv_idx%beg)%sf(i,j,k) * & - ( 1d0 + 0.2d0*exp(-1d0 * & - ((x_cb(i)-x_centroid)**2.d0 + (y_cb(j)-y_centroid)**2.d0 + (z_cb(k)-z_centroid)**2.d0) & - /(2.d0*0.005d0)) ) + ! q_prim_vf(adv_idx%beg)%sf(i,j,k) = q_prim_vf(adv_idx%beg)%sf(i,j,k) * & + ! ( 1d0 + 0.2d0*exp(-1d0 * & + ! ((x_cb(i)-x_centroid)**2.d0 + (y_cb(j)-y_centroid)**2.d0 + (z_cb(k)-z_centroid)**2.d0) & + ! /(2.d0*0.005d0)) ) !bump in R(x) - q_prim_vf(adv_idx%end+1)%sf(i,j,k) = q_prim_vf(adv_idx%end+1)%sf(i,j,k) * & - ( 1d0 + 0.2d0*exp(-1d0 * & - ((x_cb(i)-x_centroid)**2.d0 + (y_cb(j)-y_centroid)**2.d0 + (z_cb(k)-z_centroid)**2.d0) & - /(2.d0*0.005d0)) ) + ! q_prim_vf(adv_idx%end+1)%sf(i,j,k) = q_prim_vf(adv_idx%end+1)%sf(i,j,k) * & + ! ( 1d0 + 0.2d0*exp(-1d0 * & + ! ((x_cb(i)-x_centroid)**2.d0 + (y_cb(j)-y_centroid)**2.d0 + (z_cb(k)-z_centroid)**2.d0) & + ! /(2.d0*0.005d0)) ) !reassign density - q_prim_vf(1)%sf(i,j,k) = & - (((q_prim_vf(E_idx)%sf(i,j,k) + pi_inf)/(pref + pi_inf))**(1d0/lit_gamma)) * & - rhoref*(1d0-q_prim_vf(E_idx+1)%sf(i,j,k)) + ! q_prim_vf(1)%sf(i,j,k) = & + ! (((q_prim_vf(E_idx)%sf(i,j,k) + pi_inf)/(pref + pi_inf))**(1d0/lit_gamma)) * & + ! rhoref*(1d0-q_prim_vf(E_idx+1)%sf(i,j,k)) ! ================================================================================ diff --git a/src/pre_process_code/m_mpi_proxy.f90 b/src/pre_process_code/m_mpi_proxy.f90 index 0f8e85012a..677a0a346e 100755 --- a/src/pre_process_code/m_mpi_proxy.f90 +++ b/src/pre_process_code/m_mpi_proxy.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_mpi_proxy.f90 !! @brief Contains module m_mpi_proxy diff --git a/src/pre_process_code/m_start_up.f90 b/src/pre_process_code/m_start_up.f90 index 78c90b2489..e7923cd140 100755 --- a/src/pre_process_code/m_start_up.f90 +++ b/src/pre_process_code/m_start_up.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_start_up.f90 !! @brief Contains module m_start_up diff --git a/src/pre_process_code/m_variables_conversion.f90 b/src/pre_process_code/m_variables_conversion.f90 index 09ae90c5b3..3e55e383b6 100755 --- a/src/pre_process_code/m_variables_conversion.f90 +++ b/src/pre_process_code/m_variables_conversion.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_variables_conversion.f90 !! @brief Contains module m_variables_conversion diff --git a/src/pre_process_code/p_main.f90 b/src/pre_process_code/p_main.f90 index fa6fa53c62..f5a63dad2f 100755 --- a/src/pre_process_code/p_main.f90 +++ b/src/pre_process_code/p_main.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file p_main.f90 !! @brief Contains program p_main diff --git a/src/simulation_code/m_bubbles.f90 b/src/simulation_code/m_bubbles.f90 index f50f6139aa..dc01142e4a 100755 --- a/src/simulation_code/m_bubbles.f90 +++ b/src/simulation_code/m_bubbles.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_bubbles.f90 !! @brief Contains module m_bubbles @@ -445,7 +419,7 @@ FUNCTION f_rddot_KM( fpbdot, fCp, fCpbw, fRho, fR, fV, fR0, fC ) IF (Re_inv/=dflt_real) cdot_star = cdot_star + 4d0*Re_inv*((fV/fR)**2d0) tmp1 = fV/fC - tmp2 = 1.5D0*(fV**2d0)*( tmp1/2d0-1d0 ) + & + tmp2 = 1.5D0*(fV**2d0)*( tmp1/3d0-1d0 ) + & (1d0 + tmp1)*(fCpbw - fCp)/fRho + & cdot_star * fR/(fRho*fC) diff --git a/src/simulation_code/m_cbc.f90 b/src/simulation_code/m_cbc.f90 index 1ae9c03701..1d85a4f3a3 100755 --- a/src/simulation_code/m_cbc.f90 +++ b/src/simulation_code/m_cbc.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_cbc.f90 !! @brief Contains module m_cbc diff --git a/src/simulation_code/m_compile_specific.f90 b/src/simulation_code/m_compile_specific.f90 index 9d099cf4c7..b22657e04d 100755 --- a/src/simulation_code/m_compile_specific.f90 +++ b/src/simulation_code/m_compile_specific.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_compile_specific.f90 !! @brief Contains module m_compile_specific diff --git a/src/simulation_code/m_data_output.f90 b/src/simulation_code/m_data_output.f90 index 95f9c8f615..85ae072341 100755 --- a/src/simulation_code/m_data_output.f90 +++ b/src/simulation_code/m_data_output.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_data_output.f90 !! @brief Contains module m_data_output diff --git a/src/simulation_code/m_derived_types.f90 b/src/simulation_code/m_derived_types.f90 index 3c0098e9e1..962dd8be81 100755 --- a/src/simulation_code/m_derived_types.f90 +++ b/src/simulation_code/m_derived_types.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_derived_types.f90 !! @brief Contains module m_derived_types diff --git a/src/simulation_code/m_derived_variables.f90 b/src/simulation_code/m_derived_variables.f90 index 2948ed40d5..35ef2ba20a 100755 --- a/src/simulation_code/m_derived_variables.f90 +++ b/src/simulation_code/m_derived_variables.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_derived_variables.f90 !! @brief Contains module m_derived_variables diff --git a/src/simulation_code/m_fftw.f90 b/src/simulation_code/m_fftw.f90 index f3ddc94f90..36dc92e9a0 100755 --- a/src/simulation_code/m_fftw.f90 +++ b/src/simulation_code/m_fftw.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_fftw.f90 !! @brief Contains module m_fftw diff --git a/src/simulation_code/m_global_parameters.f90 b/src/simulation_code/m_global_parameters.f90 index cecc4fc401..d3f48a8cd4 100755 --- a/src/simulation_code/m_global_parameters.f90 +++ b/src/simulation_code/m_global_parameters.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_global_parameters.f90 !! @brief Contains module m_global_parameters @@ -622,8 +596,8 @@ SUBROUTINE s_initialize_global_parameters_module() ! ------------------- DO j = 1, nmom bub_idx%moms(i,j) = bub_idx%beg+(j-1)+(i-1)*nmom END DO - bub_idx%rs(i) = bub_idx%moms(i,1) - bub_idx%vs(i) = bub_idx%moms(i,2) + bub_idx%rs(i) = bub_idx%moms(i,2) + bub_idx%vs(i) = bub_idx%moms(i,3) END DO ELSE DO i = 1, nb diff --git a/src/simulation_code/m_mpi_proxy.f90 b/src/simulation_code/m_mpi_proxy.f90 index f3b4cbc9ea..9c407d7d1d 100755 --- a/src/simulation_code/m_mpi_proxy.f90 +++ b/src/simulation_code/m_mpi_proxy.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_mpi_proxy.f90 !! @brief Contains module m_mpi_proxy diff --git a/src/simulation_code/m_qbmm.f90 b/src/simulation_code/m_qbmm.f90 index 62e098bcdd..4ff65679fc 100755 --- a/src/simulation_code/m_qbmm.f90 +++ b/src/simulation_code/m_qbmm.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_qbmm.f90 !! @brief Contains module m_qbmm diff --git a/src/simulation_code/m_rhs.f90 b/src/simulation_code/m_rhs.f90 index 997526a216..5136852fed 100755 --- a/src/simulation_code/m_rhs.f90 +++ b/src/simulation_code/m_rhs.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_rhs.f90 !! @brief Contains module m_rhs diff --git a/src/simulation_code/m_riemann_solvers.f90 b/src/simulation_code/m_riemann_solvers.f90 index 7f5816324b..36f35bd724 100755 --- a/src/simulation_code/m_riemann_solvers.f90 +++ b/src/simulation_code/m_riemann_solvers.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_riemann_solvers.f90 !! @brief Contains module m_riemann_solvers diff --git a/src/simulation_code/m_start_up.f90 b/src/simulation_code/m_start_up.f90 index ef23350e4a..d8c25c2b63 100755 --- a/src/simulation_code/m_start_up.f90 +++ b/src/simulation_code/m_start_up.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_start_up.f90 !! @brief Contains module m_start_up diff --git a/src/simulation_code/m_time_steppers.f90 b/src/simulation_code/m_time_steppers.f90 index fbb9bc0e5c..86db261acf 100755 --- a/src/simulation_code/m_time_steppers.f90 +++ b/src/simulation_code/m_time_steppers.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_time_steppers.f90 !! @brief Contains module m_time_steppers diff --git a/src/simulation_code/m_variables_conversion.f90 b/src/simulation_code/m_variables_conversion.f90 index 03d51c37bb..106b1a0f09 100755 --- a/src/simulation_code/m_variables_conversion.f90 +++ b/src/simulation_code/m_variables_conversion.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_variables_conversion.f90 !! @brief Contains module m_variables_conversion diff --git a/src/simulation_code/m_weno.f90 b/src/simulation_code/m_weno.f90 index 357745833c..7019b1921d 100755 --- a/src/simulation_code/m_weno.f90 +++ b/src/simulation_code/m_weno.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file m_weno.f90 !! @brief Contains module m_weno @@ -1555,7 +1529,12 @@ SUBROUTINE s_finalize_weno( vL_vf, vR_vf, cd_vars, & ! ----------------- END IF ! ================================================================== - +! print *, vL_vf(E_idx)%sf(50,50,50) +! print *, vL_vf(mom_idx%beg)%sf(50,50,50) +! print *, vR_vf(E_idx)%sf(50,50,50) +! print *, vR_vf(mom_idx%beg)%sf(50,50,50) + + ! Deallocating the cell-average variables that were reshaped and/or ! characteristically decomposed in the coordinate direction of WENO ! reconstruction diff --git a/src/simulation_code/p_main.f90 b/src/simulation_code/p_main.f90 index eedea083df..23e8b42823 100755 --- a/src/simulation_code/p_main.f90 +++ b/src/simulation_code/p_main.f90 @@ -1,29 +1,3 @@ -!! __ _______________ -!! / |/ / ____/ ____/ -!! / /|_/ / /_ / / -!! / / / / __/ / /___ -!! /_/ /_/_/ \____/ -!! -!! This file is part of MFC. -!! -!! MFC is the legal property of its developers, whose names -!! are listed in the copyright file included with this source -!! distribution. -!! -!! MFC is free software: you can redistribute it and/or modify -!! it under the terms of the GNU General Public License as published -!! by the Free Software Foundation, either version 3 of the license -!! or any later version. -!! -!! MFC is distributed in the hope that it will be useful, -!! but WITHOUT ANY WARRANTY; without even the implied warranty of -!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -!! GNU General Public License for more details. -!! -!! You should have received a copy of the GNU General Public License -!! along with MFC (LICENSE). -!! If not, see . - !> !! @file p_main.f90 !! @brief Contains program p_main diff --git a/tests/checks.sh b/tests/checks.sh index 5eafed03fb..c5b3facb40 100755 --- a/tests/checks.sh +++ b/tests/checks.sh @@ -19,8 +19,8 @@ for mytest in "${mytests[@]}"; do cd $mytest #Run test case - ./input.py pre_process > pre_process.out - ./input.py simulation > simulation.out + /usr/bin/env python ./input.py pre_process > pre_process.out + /usr/bin/env python ./input.py simulation > simulation.out cd check check_file=$(echo *) @@ -51,3 +51,8 @@ done echo ----------------------------------------------- echo ---- $nfail Tests failed echo ---- $npass Tests passed + +# Proper Exit Code +# 0 - Success +# Not(0) - Fail (1 or more tests) +exit $nfail \ No newline at end of file