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###
# env setup so must be sourced, not run
# 29 June 04: translated to bash by larry sheradon
#
# nb: sysbiorc.csh is most actively used and the .sh often ends up out of
# date. be careful.
###
##
# stuff for external dependencies.
##
export EXTERNAL_REL=0.0.2
export EXTERNAL=/homes/SysBio/external/releases/$EXTERNAL_REL
##
# Release tools stuff
##
export RTCURRENT=rtBoot
export RTROOT=/homes/SysBio
export RTDIST=$RTROOT/dist
export RTARCH=linux-rh73
alias rtpath='source $RTDIST/releases/$RTCURRENT/ReleaseTools/RTPath.sh'
# make sure they have some sort of path
export PATH=$EXTERNAL/bin:$PATH:$EXTERNAL/AccessGrid/bin
rtpath
# CVS Repo. You can also do :ext:username@biocvs if you need to, but this
# should work in general:
export CVSROOT=:ext:biocvs.mcs.anl.gov:/disks/cvs/bio
export CVS_RSH=ssh
export CYTOSCAPE_HOME=/homes/SysBio/external/packages/Cytoscape1.1.1/
export CYTOSCAPE_COMMAND=$CYTOSCAPE_HOME/cytoscape.sh
export CYTOSCAPE_DISPLAY=$DISPLAY
##
# What follows are set up as appends so that earlier configs can supercede.
##
# systems dot lacks fonts. we dumped needed fonts here:
export DOTFONTPATH=$DOTFONTPATH:/homes/SysBio/external/X11R6/lib/X11/fonts/truetype
export PYTHONPATH=$PYTHONPATH:/homes/SysBio/external/releases/$EXTERNAL_REL/lib/python2.2/site-packages
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$EXTERNAL/lib/:/soft/com/packages/oracle/OraHome1/lib
# Shared AG installation
#. $EXTERNAL/AccessGrid/env-init.sh