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Commits on Jan 23, 2013
  1. Merge pull request #235 from MG-RAST/develop

    Updating master with develop
    wilke committed Jan 23, 2013
  2. Merge pull request #234 from jaredbischof/develop

    Fixed call to retrieve md5s for a given job and function.
    teharrison committed Jan 23, 2013
  3. Merge pull request #233 from teharrison/develop

    api matrix star rights was broken
    jaredbischof committed Jan 23, 2013
  4. command line script for biom dump

    Travis Harrison committed Jan 23, 2013
  5. fixed star rights with matrix

    Travis Harrison committed Jan 23, 2013
Commits on Jan 21, 2013
  1. Merge pull request #232 from teharrison/develop

    api fixes / additions
    jaredbischof committed Jan 21, 2013
  2. child thread now behaves

    Travis Harrison committed Jan 21, 2013
  3. matrix for dumping to file

    Travis Harrison committed Jan 21, 2013
Commits on Jan 20, 2013
  1. added check for 'viewable' status of jobs - otherwise api breaks or r…

    …eturns bad data
    Travis Harrison committed Jan 20, 2013
Commits on Jan 17, 2013
  1. Merge pull request #231 from jaredbischof/develop

    Renaming stats_info and error_log files in inbox if sequence file gets renamed.
    teharrison committed Jan 17, 2013
  2. Keeping stats_info and error_log files with the sequence file in the …

    …inbox if the sequence file gets renamed. Should fix problem where stats_info and error_log files were not being deleted from the inbox after submission if the sequence file was renamed for not having a .fastq or .fna extension.
    jaredbischof committed Jan 17, 2013
Commits on Jan 16, 2013
  1. Merge pull request #230 from teharrison/develop

    fixed matrix id to be consistant with input options
    teharrison committed Jan 16, 2013
  2. fixed matrix id to be consistant with input options

    Travis Harrison committed Jan 16, 2013
  3. Merge pull request #229 from teharrison/develop

    api updates: caching update, notebook POST to shock
    teharrison committed Jan 16, 2013
Commits on Jan 15, 2013
  1. updated caching to use master function in resource.pm

    Travis Harrison committed Jan 15, 2013
  2. added post of notebook file for loading to shock

    Travis Harrison committed Jan 15, 2013
  3. Merge pull request #228 from teharrison/develop

    fixed matrix id, added caching of json output
    jaredbischof committed Jan 15, 2013
Commits on Jan 14, 2013
  1. url_id is now properly unique

    Travis Harrison committed Jan 14, 2013
  2. caching of instance return data implamented

    Travis Harrison committed Jan 14, 2013
  3. implamented functions and options to do memcached caching of json ret…

    …urn string
    Travis Harrison committed Jan 14, 2013
  4. fixed public access of private items

    Travis Harrison committed Jan 14, 2013
Commits on Jan 12, 2013
  1. Merge pull request #227 from jaredbischof/develop

    Allow user to delete their job if there is no "priority" attribute in the JobDB for when the data would be made public.
    teharrison committed Jan 12, 2013
Commits on Jan 11, 2013
  1. Allow user to delete their job if there is no "priority" attribute in…

    … the JobDB for when the data would be made public.
    jaredbischof committed Jan 11, 2013
Commits on Jan 10, 2013
  1. Merge pull request #226 from teharrison/develop

    added evalue, identity, length cutoffs for api matrix and abundanceprofile. added option to filter matrix returns by opposing annotations
    jaredbischof committed Jan 10, 2013
  2. merged conflicts

    Travis Harrison committed Jan 10, 2013
  3. added evalue, identity, length cutoffs for api matrix and abundancepr…

    …ofile. added option to filter matrix returns by opposing annotations
    Travis Harrison committed Jan 10, 2013
  4. Merge pull request #225 from jaredbischof/develop

    Fixed url that was returned by resource in return structure.  Also, adde...
    teharrison committed Jan 10, 2013
  5. Fixed url that was returned by resource in return structure. Also, ad…

    …ded error message for when md5s are entered but none are found in the database. And, changed the behavior. Before if no md5s were sent in md5s_to_read_sequences call, all sequences were returned. Fixed this by doing a check before making that call. Lastly, included only valid md5s in returned url.
    jaredbischof committed Jan 10, 2013
Commits on Jan 8, 2013
  1. Merge pull request #224 from jaredbischof/develop

    Fixed/updated sequences resource and fixed bugs.
    teharrison committed Jan 8, 2013
  2. Fixed a couple bugs that were causing the MetagenomeOverview page to …

    …come up blank if the taxonomy stats were missing. Also, changed the return structure of the sequences resource by editing md5_abundance_for_annotations, sequences_for_md5s, and sequences_for_annotation. And, edited _get_annotation_map so it will return the md5 int to md5 string mapping.
    jaredbischof committed Jan 8, 2013