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Commits on Feb 28, 2013
  1. @teharrison

    Merge pull request #263 from MG-RAST/develop

    Version 3.3.2 update
    teharrison committed Feb 28, 2013
Commits on Feb 26, 2013
  1. @teharrison

    Merge pull request #262 from teharrison/develop

    api metagenome fix
    teharrison committed Feb 26, 2013
  2. fixed public / private

    Travis Harrison committed Feb 26, 2013
  3. @teharrison

    Merge pull request #261 from jaredbischof/develop

    Fixed bug in code where same sequence was being included multiple times in BLAT alignments causing a bunch of duplicates on the BLAT alignments page.
    teharrison committed Feb 26, 2013
  4. @jaredbischof
  5. @jaredbischof

    Fixed bug in code where same sequence was being included multiple tim…

    …es in BLAT alignments causing a bunch of duplicates on the BLAT alignments page.
    jaredbischof committed Feb 26, 2013
  6. @paczian

    Merge pull request #260 from jaredbischof/develop

    Fixed a couple of MG-RAST search errors.
    paczian committed Feb 26, 2013
Commits on Feb 25, 2013
  1. @jaredbischof
  2. @jaredbischof

    Added check to see if sub-search returns any ideas so that page stops…

    … creating sql errors. Also, removed requirement that search results from from 'M5NR' except when searching organisms because that is the only annotation for which we calculated and recorded the M5NR abundance information.
    jaredbischof committed Feb 25, 2013
  3. @teharrison

    Merge pull request #259 from teharrison/develop

    api updates: notebook timestamp, 'status' option with metagenome
    teharrison committed Feb 25, 2013
  4. added 'status' option for metagenome query to only return metagenomes…

    … of inputted status: public, private, both
    Travis Harrison committed Feb 25, 2013
  5. change notebook timestamp to GM time to normalize

    Travis Harrison committed Feb 25, 2013
Commits on Feb 23, 2013
  1. @teharrison

    Merge pull request #258 from teharrison/develop

    notebook api: added deletion (really just setting a 'deleted' attribute in shock node)
    teharrison committed Feb 23, 2013
  2. added option to flag notebook as deleted - that flag gets returned wi…

    …th query
    Travis Harrison committed Feb 23, 2013
Commits on Feb 22, 2013
  1. @wilke

    Merge pull request #257 from teharrison/develop

    notebook api update
    wilke committed Feb 22, 2013
  2. fix syntax error

    Travis Harrison committed Feb 22, 2013
  3. added 'description' field in notebook attributes

    Travis Harrison committed Feb 22, 2013
Commits on Feb 21, 2013
  1. @teharrison

    Merge pull request #256 from jaredbischof/develop

    Fix for sequenceset resource.
    teharrison committed Feb 21, 2013
  2. @jaredbischof
  3. @jaredbischof

    Changed the sequenceset resource call to use get_objects instead of i…

    …nit to avoid PPO error "ERROR: resource request failed. There must be a unique index on the combination of attributes passed. at /mcs/bio/mg-rast/api/sites/MG-RAST/site/lib/PPO/DBObject.pm line 429."
    jaredbischof committed Feb 21, 2013
  4. @teharrison

    Merge pull request #255 from jaredbischof/develop

    Added user login to memcache key
    teharrison committed Feb 21, 2013
  5. @jaredbischof
  6. @jaredbischof

    Added user login to all memcache keys so resources like "metagenome" …

    …that are dependent on which user is doing the querying, can be cached.
    jaredbischof committed Feb 21, 2013
  7. @teharrison

    Merge pull request #254 from paczian/master

    added pcoa resource
    teharrison committed Feb 21, 2013
  8. @paczian

    added for pcoa calculations

    paczian committed Feb 21, 2013
Commits on Feb 19, 2013
  1. @paczian
Commits on Feb 18, 2013
  1. @teharrison

    Merge pull request #253 from teharrison/develop

    updated api metagenome, migs data consistant with overview page, 'full' ...
    teharrison committed Feb 18, 2013
  2. @teharrison

    Merge pull request #252 from jaredbischof/develop

    Sanitizing uploaded filenames and fix to caching API queries.
    teharrison committed Feb 18, 2013
  3. updated api metagenome, migs data consistant with overview page, 'ful…

    …l' verbosity has miogs data
    Travis Harrison committed Feb 18, 2013
  4. @jaredbischof
Commits on Feb 15, 2013
  1. @jaredbischof

    Now sanitizing filenames on upload before the files are written to di…

    …sk. Created subroutine so that filenames created from uploading and from extracting an archive have their filenames sanitized by one piece of code.
    jaredbischof committed Feb 15, 2013
  2. @paczian