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branch: master
Commits on Feb 23, 2015
  1. Travis Harrison

    Merge pull request #384 from teharrison/master

    teharrison authored
    safe handeling of empty file
  2. Travis Harrison
  3. Travis Harrison

    Merge pull request #383 from teharrison/master

    teharrison authored
    update to seq stats awe wrapper
Commits on Feb 20, 2015
  1. Travis Harrison
  2. Travis Harrison

    fix always exit status of 1

    teharrison authored
Commits on Feb 19, 2015
  1. Travis Harrison

    set data type when complete

    teharrison authored
Commits on Dec 17, 2014
  1. Travis Harrison

    Merge pull request #376 from jaredbischof/master

    teharrison authored
    Excluding seek, length fields when they exceed int range
Commits on Dec 4, 2014
  1. Travis Harrison

    Merge pull request #370 from jaredbischof/master

    teharrison authored
    Added option to add unique identifiers to fasta file when truncating by length.
Commits on Nov 13, 2014
  1. Travis Harrison

    Merge pull request #369 from teharrison/master

    teharrison authored
    fix perl variables
  2. Travis Harrison

    fix perl variables

    teharrison authored
Commits on Nov 11, 2014
  1. Travis Harrison

    Merge pull request #368 from teharrison/master

    teharrison authored
    changed index_sim_seq to use berkleydb instead of mongodb
Commits on Nov 10, 2014
  1. Travis Harrison
Commits on Nov 6, 2014
  1. Travis Harrison

    Merge pull request #367 from wgerlach/master

    teharrison authored
    workflow is transformed into hash and submitted as string.
Commits on Nov 4, 2014
  1. Travis Harrison

    Merge pull request #366 from teharrison/master

    teharrison authored
    updates to properly switch pipeline to use BerkleyDB in annotation stage
  2. Travis Harrison

    fix to task numbering

    teharrison authored
  3. Travis Harrison
  4. Travis Harrison
  5. Travis Harrison

    Merge pull request #365 from wgerlach/master

    teharrison authored
    moved awe_loaddb to the end of the document, easier to omit for testing
Commits on Nov 3, 2014
  1. Travis Harrison

    Merge pull request #364 from wgerlach/master

    teharrison authored
    make docker an option in the production template
Commits on Oct 28, 2014
  1. Travis Harrison
  2. Travis Harrison
Commits on Oct 27, 2014
  1. Travis Harrison

    fix start by 0 error

    teharrison authored
  2. Travis Harrison

    bug fixes

    teharrison authored
  3. Travis Harrison

    Merge pull request #361 from jaredbischof/master

    teharrison authored
    Modified script to use Berkeley DB locally rather than remote mongo serv...
Commits on Oct 24, 2014
  1. Travis Harrison
Commits on Oct 20, 2014
  1. Travis Harrison

    Merge pull request #360 from teharrison/master

    teharrison authored
    fix fasta/fastq from being determined from file name
  2. Travis Harrison
Commits on Oct 17, 2014
  1. Travis Harrison

    Merge pull request #359 from teharrison/master

    teharrison authored
    add format option to qc and preprocess stages incase sequence format not same as suffix, still backwards compatable
  2. Travis Harrison

    update usage

    teharrison authored
  3. Travis Harrison
  4. Travis Harrison

    add format option to qc and preprocess stages incase sequence format …

    teharrison authored
    …not same as suffix, still backwards compatable
  5. Travis Harrison

    Merge pull request #358 from teharrison/master

    teharrison authored
    update to scripts for inbox actions
  6. Travis Harrison
Commits on Oct 15, 2014
  1. Travis Harrison

    fix syntax errors

    teharrison authored
  2. Travis Harrison
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