MGEScan on Galaxy Workflow
MGEScan on Galaxy is the latest version of MGEScan to identify long terminal repeats (LTR) and non-LTR retroelements in eukaryotic genomic sequences on a web interface or on a command line. HMMER v3.1b1 and openMPI are supported for MGEScan-LTR and MGEScan-nonLTR programs so the better performance is guaranteed than previous version of MGEScan. Cloud image is available on Amazon Cloud (EC2) to utilize on-demand computing resources for data analysis.
.. comment:: **Try MGEScan here:** `MGEScan on IU FutureSystems OpenStack Cloud <server.html>`_ **Try MGEScan here:** |Click|. .. |Click| raw:: html <a href="http://220.127.116.11:38080/" target="_blank">MGEScan on OpenStack Cloud (on Futuresystems.org)</a> The link redirects to 18.104.22.168:38080 as of 04/14/2016. Refresh this page if it is changed or not accessible, contact us via firstname.lastname@example.org. .. note:: Every first Tuesday of the month is a maintenance day on FutureSystems and MGEScan is unavailable until it's completed.
The documentation provides basic tutorials of using MGEScan on Galaxy Workflow system and additional information such as installation and use of MGEScan on Amazon Cloud (AWS EC2).
.. toctree:: :maxdepth: 1 tutorial workflow tutorial-cmd installation toolshed blockdiag aws ltr nonltr visualization results-updated results source
.. comment:: Indices and tables ================== * :ref:`genindex` * :ref:`modindex` * :ref:`search`