diff --git a/concepts/make-concepts.sql b/concepts/make-concepts.sql index 1a7beb4..79ae1c3 100644 --- a/concepts/make-concepts.sql +++ b/concepts/make-concepts.sql @@ -7,17 +7,32 @@ BEGIN; \i code-status.sql \i echo-data.sql -\echo 'Directory 1 of 7: comorbidity' +-- Durations (usually of treatments) +\echo 'Directory 1 of 7: durations' +\i durations/ventilation-durations.sql +\i durations/crrt-durations.sql +\i durations/adenosine-durations.sql +\i durations/dobutamine-durations.sql +\i durations/dopamine-durations.sql +\i durations/epinephrine-durations.sql +\i durations/isuprel-durations.sql +\i durations/milrinone-durations.sql +\i durations/norepinephrine-durations.sql +\i durations/phenylephrine-durations.sql +\i durations/vasopressin-durations.sql +\i durations/vasopressor-durations.sql + +\echo 'Directory 2 of 7: comorbidity' \i comorbidity/elixhauser-ahrq-v37-with-drg.sql \i comorbidity/elixhauser-quan.sql \i comorbidity/elixhauser-score-ahrq.sql \i comorbidity/elixhauser-score-quan.sql -\echo 'Directory 2 of 7: demographics' +\echo 'Directory 3 of 7: demographics' \i demographics/HeightWeightQuery.sql \i demographics/icustay_detail.sql -\echo 'Directory 3 of 7: firstday' +\echo 'Directory 4 of 7: firstday' -- data which is extracted from a patient's first ICU stay \i firstday/blood-gas-first-day.sql \i firstday/blood-gas-first-day-arterial.sql @@ -30,17 +45,17 @@ BEGIN; \i firstday/vitals-first-day.sql \i firstday/weight-first-day.sql -\echo 'Directory 4 of 7: sepsis' +\echo 'Directory 5 of 7: sepsis' \i sepsis/angus.sql -- diagnosis mapping using CCS -\echo 'Directory 5 of 7: diagnosis' +\echo 'Directory 6 of 7: diagnosis' \cd diagnosis \i ccs_diagnosis_table.sql \cd .. -- Severity of illness scores (requires many views from above) -\echo 'Directory 6 of 7: severityscores' +\echo 'Directory 7 of 7: severityscores' \i severityscores/oasis.sql \i severityscores/sofa.sql \i severityscores/saps.sql @@ -48,21 +63,4 @@ BEGIN; \i severityscores/apsiii.sql \i severityscores/lods.sql --- Durations (usually of treatments) -\echo 'Directory 7 of 7: durations' -\i durations/ventilation-durations.sql -\i durations/crrt-durations.sql -\i durations/adenosine-durations.sql -\i durations/dobutamine-durations.sql -\i durations/dopamine-durations.sql -\i durations/epinephrine-durations.sql -\i durations/isuprel-durations.sql -\i durations/milrinone-durations.sql -\i durations/norepinephrine-durations.sql -\i durations/phenylephrine-durations.sql -\i durations/vasopressin-durations.sql -\i durations/vasopressor-durations.sql - - -COMMIT; \echo 'Finished loading materialized views.'