From 8bd0ee0cee901a66ee3cf13396f4ec3269fb0ba6 Mon Sep 17 00:00:00 2001 From: Alistair Johnson Date: Wed, 21 Jun 2017 20:41:45 -0400 Subject: [PATCH] move durations into one folder and update make-concepts to reflect --- .../adenosine-durations.sql | 0 .../dobutamine-durations.sql | 0 .../dopamine-durations.sql | 0 .../epinephrine-durations.sql | 0 .../isuprel-durations.sql | 0 .../milrinone-durations.sql | 0 .../norepinephrine-durations.sql | 0 .../phenylephrine-durations.sql | 0 .../vasopressin-durations.sql | 0 .../vasopressor-durations.sql | 0 concepts/{ => durations}/ventilation-durations.sql | 0 concepts/make-concepts.sql | 44 +++++++++++++--------- 12 files changed, 26 insertions(+), 18 deletions(-) rename concepts/{vasopressor-durations => durations}/adenosine-durations.sql (100%) rename concepts/{vasopressor-durations => durations}/dobutamine-durations.sql (100%) rename concepts/{vasopressor-durations => durations}/dopamine-durations.sql (100%) rename concepts/{vasopressor-durations => durations}/epinephrine-durations.sql (100%) rename concepts/{vasopressor-durations => durations}/isuprel-durations.sql (100%) rename concepts/{vasopressor-durations => durations}/milrinone-durations.sql (100%) rename concepts/{vasopressor-durations => durations}/norepinephrine-durations.sql (100%) rename concepts/{vasopressor-durations => durations}/phenylephrine-durations.sql (100%) rename concepts/{vasopressor-durations => durations}/vasopressin-durations.sql (100%) rename concepts/{vasopressor-durations => durations}/vasopressor-durations.sql (100%) rename concepts/{ => durations}/ventilation-durations.sql (100%) diff --git a/concepts/vasopressor-durations/adenosine-durations.sql b/concepts/durations/adenosine-durations.sql similarity index 100% rename from concepts/vasopressor-durations/adenosine-durations.sql rename to concepts/durations/adenosine-durations.sql diff --git a/concepts/vasopressor-durations/dobutamine-durations.sql b/concepts/durations/dobutamine-durations.sql similarity index 100% rename from concepts/vasopressor-durations/dobutamine-durations.sql rename to concepts/durations/dobutamine-durations.sql diff --git a/concepts/vasopressor-durations/dopamine-durations.sql b/concepts/durations/dopamine-durations.sql similarity index 100% rename from concepts/vasopressor-durations/dopamine-durations.sql rename to concepts/durations/dopamine-durations.sql diff --git a/concepts/vasopressor-durations/epinephrine-durations.sql b/concepts/durations/epinephrine-durations.sql similarity index 100% rename from concepts/vasopressor-durations/epinephrine-durations.sql rename to concepts/durations/epinephrine-durations.sql diff --git a/concepts/vasopressor-durations/isuprel-durations.sql b/concepts/durations/isuprel-durations.sql similarity index 100% rename from concepts/vasopressor-durations/isuprel-durations.sql rename to concepts/durations/isuprel-durations.sql diff --git a/concepts/vasopressor-durations/milrinone-durations.sql b/concepts/durations/milrinone-durations.sql similarity index 100% rename from concepts/vasopressor-durations/milrinone-durations.sql rename to concepts/durations/milrinone-durations.sql diff --git a/concepts/vasopressor-durations/norepinephrine-durations.sql b/concepts/durations/norepinephrine-durations.sql similarity index 100% rename from concepts/vasopressor-durations/norepinephrine-durations.sql rename to concepts/durations/norepinephrine-durations.sql diff --git a/concepts/vasopressor-durations/phenylephrine-durations.sql b/concepts/durations/phenylephrine-durations.sql similarity index 100% rename from concepts/vasopressor-durations/phenylephrine-durations.sql rename to concepts/durations/phenylephrine-durations.sql diff --git a/concepts/vasopressor-durations/vasopressin-durations.sql b/concepts/durations/vasopressin-durations.sql similarity index 100% rename from concepts/vasopressor-durations/vasopressin-durations.sql rename to concepts/durations/vasopressin-durations.sql diff --git a/concepts/vasopressor-durations/vasopressor-durations.sql b/concepts/durations/vasopressor-durations.sql similarity index 100% rename from concepts/vasopressor-durations/vasopressor-durations.sql rename to concepts/durations/vasopressor-durations.sql diff --git a/concepts/ventilation-durations.sql b/concepts/durations/ventilation-durations.sql similarity index 100% rename from concepts/ventilation-durations.sql rename to concepts/durations/ventilation-durations.sql diff --git a/concepts/make-concepts.sql b/concepts/make-concepts.sql index b17b5ec..1a7beb4 100644 --- a/concepts/make-concepts.sql +++ b/concepts/make-concepts.sql @@ -6,19 +6,18 @@ BEGIN; \echo 'Top level files..' \i code-status.sql \i echo-data.sql -\i ventilation-durations.sql -\echo 'Directory 1 of 6: comorbidity' +\echo 'Directory 1 of 7: comorbidity' \i comorbidity/elixhauser-ahrq-v37-with-drg.sql \i comorbidity/elixhauser-quan.sql \i comorbidity/elixhauser-score-ahrq.sql \i comorbidity/elixhauser-score-quan.sql -\echo 'Directory 2 of 6: demographics' +\echo 'Directory 2 of 7: demographics' \i demographics/HeightWeightQuery.sql \i demographics/icustay_detail.sql -\echo 'Directory 3 of 6: firstday' +\echo 'Directory 3 of 7: firstday' -- data which is extracted from a patient's first ICU stay \i firstday/blood-gas-first-day.sql \i firstday/blood-gas-first-day-arterial.sql @@ -31,24 +30,17 @@ BEGIN; \i firstday/vitals-first-day.sql \i firstday/weight-first-day.sql -\echo 'Directory 4 of 6: sepsis' +\echo 'Directory 4 of 7: sepsis' \i sepsis/angus.sql --- vasopressor durations -\echo 'Directory 5 of 6: vasopressor-durations' -\i vasopressor-durations/adenosine-durations.sql -\i vasopressor-durations/dobutamine-durations.sql -\i vasopressor-durations/dopamine-durations.sql -\i vasopressor-durations/epinephrine-durations.sql -\i vasopressor-durations/isuprel-durations.sql -\i vasopressor-durations/milrinone-durations.sql -\i vasopressor-durations/norepinephrine-durations.sql -\i vasopressor-durations/phenylephrine-durations.sql -\i vasopressor-durations/vasopressin-durations.sql -\i vasopressor-durations/vasopressor-durations.sql +-- diagnosis mapping using CCS +\echo 'Directory 5 of 7: diagnosis' +\cd diagnosis +\i ccs_diagnosis_table.sql +\cd .. -- Severity of illness scores (requires many views from above) -\echo 'Directory 6 of 6: severityscores' +\echo 'Directory 6 of 7: severityscores' \i severityscores/oasis.sql \i severityscores/sofa.sql \i severityscores/saps.sql @@ -56,5 +48,21 @@ BEGIN; \i severityscores/apsiii.sql \i severityscores/lods.sql +-- Durations (usually of treatments) +\echo 'Directory 7 of 7: durations' +\i durations/ventilation-durations.sql +\i durations/crrt-durations.sql +\i durations/adenosine-durations.sql +\i durations/dobutamine-durations.sql +\i durations/dopamine-durations.sql +\i durations/epinephrine-durations.sql +\i durations/isuprel-durations.sql +\i durations/milrinone-durations.sql +\i durations/norepinephrine-durations.sql +\i durations/phenylephrine-durations.sql +\i durations/vasopressin-durations.sql +\i durations/vasopressor-durations.sql + + COMMIT; \echo 'Finished loading materialized views.'