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Merged
merged 19 commits into from
Jan 9, 2018
Merged

Add antarctic melt time series #237

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994a03c
Add task for plotting time series of Antarctic melt
xylar Aug 25, 2017
ddb3922
Add script for preprocessing ice-shelf masks
xylar Aug 25, 2017
93cee94
Update theta config file for ice-shelf run
xylar Aug 25, 2017
f3e9b83
Correct ice shelf area calculation
stephenprice Aug 30, 2017
42fcc49
Read in obs melt flux from Rignot csv file
stephenprice Aug 31, 2017
b34f078
Make obs melt flux dictionary from Rignot csv file
stephenprice Sep 7, 2017
f38959f
Add local obs & model timeseries plot function
stephenprice Sep 8, 2017
734cafa
Add obs. unc. estimate to plots
stephenprice Sep 8, 2017
3a6b460
Add support for plotting observations as error bars
stephenprice Sep 22, 2017
b562693
Minor additions to obs plotting options
stephenprice Sep 28, 2017
a1223b4
Iterate over obs datasets for plotting
stephenprice Oct 24, 2017
9bb3b98
Add descriptive text on obs data to plot legend
stephenprice Oct 25, 2017
4a191cf
Changes to melt time series task for python 3
xylar Dec 11, 2017
95d47eb
Add XML files for melt time-series plots
xylar Dec 19, 2017
a55d4e6
Update example config files
xylar Dec 19, 2017
4e5ac98
Make PEP8 compliant
stephenprice Jan 8, 2018
1171ceb
Add optional obs error bars to time series plots
xylar Jan 9, 2018
adf52d0
Clean up obsDict
xylar Jan 9, 2018
5c28260
Allow plotting of ice shelves without observations
xylar Jan 9, 2018
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6 changes: 3 additions & 3 deletions configs/anvil/config.20170926.FCT2.A_WCYCL1850S.ne30_oECv3.anvil
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Expand Up @@ -59,9 +59,9 @@ htmlSubdirectory = html
# option:
# ./run_mpas_analysis config.analysis --generate \
# all,no_ocean,all_timeSeries
# The climatologyMapAntarcticMelt task is disabled because this run did not
# include ice-shelf cavities.`
generate = ['all', 'no_climatologyMapAntarcticMelt']
# All tasks with tag "landIceCavities" are disabled because this run did not
# include land-ice cavities.
generate = ['all', 'no_landIceCavities']

[climatology]
## options related to producing climatologies, typically to compare against
Expand Down
8 changes: 8 additions & 0 deletions configs/cori/config.20171201.default.GMPAS-IAF.T62_oRRS30to10v3wLI.cori-knl
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Expand Up @@ -164,6 +164,14 @@ depths = ['top', -200, -400, -600, -800, 'bot']
# plot on polar plot
polarPlot = False

[timeSeriesAntarcticMelt]
## options related to plotting time series of melt below Antarctic ice shelves

# list of ice shelves to plot or ['all'] for all 106 ice shelves and regions.
# See "regionNames" in the ice shelf masks file in regionMaskDirectory for
# details.
iceShelvesToPlot = ['Peninsula', 'West Antarctica', 'East Antarctica', 'Larsen_C', 'Filchner', 'Ronne', 'Brunt_Stancomb', 'Fimbul', 'Amery', 'Totten', 'Ross_West', 'Ross_East', 'Getz', 'Thwaites', 'Pine_Island', 'Abbot', 'George_VI']

[regions]
## options related to ocean regions used in several analysis modules

Expand Down
6 changes: 3 additions & 3 deletions configs/edison/config.20170807.beta1.G_oQU240.edison
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Expand Up @@ -60,9 +60,9 @@ htmlSubdirectory = html
# option:
# ./run_mpas_analysis config.analysis --generate \
# all,no_ocean,all_timeSeries
# The climatologyMapAntarcticMelt task is disabled because this run did not
# include ice-shelf cavities.`
generate = ['all', 'no_climatologyMapAntarcticMelt']
# All tasks with tag "landIceCavities" are disabled because this run did not
# include land-ice cavities.
generate = ['all', 'no_landIceCavities']

[climatology]
## options related to producing climatologies, typically to compare against
Expand Down
6 changes: 3 additions & 3 deletions configs/edison/config.20170915.beta2.A_WCYCL1850S.ne30_oECv3_ICG.edison
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Original file line number Diff line number Diff line change
Expand Up @@ -75,9 +75,9 @@ htmlSubdirectory = html
# option:
# ./run_mpas_analysis config.analysis --generate \
# all,no_ocean,all_timeSeries
# The climatologyMapAntarcticMelt task is disabled because this run did not
# include ice-shelf cavities.`
generate = ['all', 'no_climatologyMapAntarcticMelt']
# All tasks with tag "landIceCavities" are disabled because this run did not
# include land-ice cavities.
generate = ['all', 'no_landIceCavities']

[climatology]
## options related to producing climatologies, typically to compare against
Expand Down
6 changes: 3 additions & 3 deletions configs/edison/config.20171102.beta3rc02_1850.ne30_oECv3_ICG.edison
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Original file line number Diff line number Diff line change
Expand Up @@ -61,9 +61,9 @@ htmlSubdirectory = html
# option:
# ./run_mpas_analysis config.analysis --generate \
# all,no_ocean,all_timeSeries
# The climatologyMapAntarcticMelt task is disabled because this run did not
# include ice-shelf cavities.`
generate = ['all', 'no_climatologyMapAntarcticMelt']
# All tasks with tag "landIceCavities" are disabled because this run did not
# include land-ice cavities.
generate = ['all', 'no_landIceCavities']

[climatology]
## options related to producing climatologies, typically to compare against
Expand Down
8 changes: 8 additions & 0 deletions configs/edison/config.B_low_res_ice_shelves_1696_JWolfe_layout_Edison
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Original file line number Diff line number Diff line change
Expand Up @@ -168,6 +168,14 @@ depths = ['top', -200, -400, -600, -800, 'bot']
# plot on polar plot
polarPlot = False

[timeSeriesAntarcticMelt]
## options related to plotting time series of melt below Antarctic ice shelves

# list of ice shelves to plot or ['all'] for all 106 ice shelves and regions.
# See "regionNames" in the ice shelf masks file in regionMaskDirectory for
# details.
iceShelvesToPlot = ['Peninsula', 'West Antarctica', 'East Antarctica', 'Larsen_C', 'Filchner', 'Ronne', 'Brunt_Stancomb', 'Fimbul', 'Amery', 'Totten', 'Ross_West', 'Ross_East', 'Getz', 'Thwaites', 'Pine_Island', 'Abbot', 'George_VI']

[regions]
## options related to ocean regions used in several analysis modules

Expand Down
6 changes: 3 additions & 3 deletions configs/lanl/config.MatchBoth_orig
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Original file line number Diff line number Diff line change
Expand Up @@ -55,9 +55,9 @@ baseDirectory = /dir/to/analysis/output
# option:
# ./run_mpas_analysis config.analysis --generate \
# all,no_ocean,all_timeSeries
# The climatologyMapAntarcticMelt task is disabled because this run did not
# include ice-shelf cavities.`
generate = ['all', 'no_climatologyMapAntarcticMelt']
# All tasks with tag "landIceCavities" are disabled because this run did not
# include land-ice cavities.
generate = ['all', 'no_landIceCavities']

[climatology]
## options related to producing climatologies, typically to compare against
Expand Down
6 changes: 3 additions & 3 deletions configs/olcf/config.20170313.beta1.A_WCYCL1850S.ne30_oECv3_ICG.edison
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Original file line number Diff line number Diff line change
Expand Up @@ -60,9 +60,9 @@ htmlSubdirectory = html
# option:
# ./run_mpas_analysis config.analysis --generate \
# all,no_ocean,all_timeSeries
# The climatologyMapAntarcticMelt task is disabled because this run did not
# include ice-shelf cavities.`
generate = ['all', 'no_climatologyMapAntarcticMelt']
# All tasks with tag "landIceCavities" are disabled because this run did not
# include land-ice cavities.
generate = ['all', 'no_landIceCavities']

[climatology]
## options related to producing climatologies, typically to compare against
Expand Down
6 changes: 3 additions & 3 deletions configs/olcf/config.20170915.beta2.A_WCYCL1850S.ne30_oECv3_ICG.edison
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Original file line number Diff line number Diff line change
Expand Up @@ -77,9 +77,9 @@ htmlSubdirectory = html
# to list all task names and their tags
# an equivalent syntax can be used on the command line to override this
# option:
# ./run_mpas_analysis config.analysis --generate \
# all,no_ocean,all_timeSeries
generate = ['all', 'no_climatologyMapAntarcticMelt']
# All tasks with tag "landIceCavities" are disabled because this run did not
# include land-ice cavities.
generate = ['all', 'no_landIceCavities']

[climatology]
## options related to producing climatologies, typically to compare against
Expand Down
6 changes: 3 additions & 3 deletions configs/olcf/config.GMPAS-IAF_oRRS18to6v3.titan
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Original file line number Diff line number Diff line change
Expand Up @@ -64,9 +64,9 @@ htmlSubdirectory = html
# option:
# ./run_mpas_analysis config.analysis --generate \
# all,no_ocean,all_timeSeries
# The climatologyMapAntarcticMelt task is disabled because this run did not
# include ice-shelf cavities.`
generate = ['all', 'no_climatologyMapAntarcticMelt']
# All tasks with tag "landIceCavities" are disabled because this run did not
# include land-ice cavities.
generate = ['all', 'no_landIceCavities']

[climatology]
## options related to producing climatologies, typically to compare against
Expand Down
2 changes: 1 addition & 1 deletion configs/theta/config.20171031.tenYearTest.GMPAS-IAF.T62_oEC60to30v3wLI.60layer.theta
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Original file line number Diff line number Diff line change
Expand Up @@ -172,4 +172,4 @@ depths = ['top', -200, -400, -600, -800, 'bot']

[timeSeriesAntarcticMelt]
# a list of ice shelves to plot
iceShelvesToPlot = ['Peninsula', 'West Antarctica', 'East Antarctica', 'Larsen_C', 'Larsen_D', 'Ronne', 'Filchner', 'Brunt_Stancomb', 'Fimbul', 'Riiser-Larsen', 'Baudouin', 'Amery', 'West', 'Shackleton', 'Totten', 'Mertz', 'Ross_East', 'Ross_West', 'Getz', 'Dotson', 'Crosson', 'Thwaites', 'Pine_Island', 'Abbot', 'Stange', 'George_VI', 'Wilkins']
iceShelvesToPlot = ['Antarctica', 'Peninsula', 'West Antarctica', 'East Antarctica', 'Larsen_C', 'Filchner-Ronne', 'Brunt_Stancomb', 'Fimbul', 'Amery', 'Totten', 'Ross', 'Getz', 'Thwaites', 'Pine_Island', 'Abbot', 'George_VI']
11 changes: 11 additions & 0 deletions mpas_analysis/config.default
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Expand Up @@ -605,6 +605,17 @@ normArgsDifference = {'linthresh': 1., 'linscale': 0.5, 'vmin': -100.,
colorbarTicksDifference = [-100., -50., -20., -10., -5., -2., -1., 0., 1., 2.,
5., 10., 20., 50., 100.]

[timeSeriesAntarcticMelt]
## options related to plotting time series of melt below Antarctic ice shelves

# list of ice shelves to plot or ['all'] for all 106 ice shelves and regions.
# See "regionNames" in the ice shelf masks file in regionMaskDirectory for
# details.
iceShelvesToPlot = ['Antarctica']

# Number of months over which to compute moving average
movingAverageMonths = 1

[climatologyMapSoseTemperature]
## options related to plotting climatology maps of Antarctic
## potential temperature at various levels, including the sea floor against
Expand Down
1 change: 1 addition & 0 deletions mpas_analysis/ocean/__init__.py
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Expand Up @@ -10,3 +10,4 @@
from .index_nino34 import IndexNino34
from .streamfunction_moc import StreamfunctionMOC
from .meridional_heat_transport import MeridionalHeatTransport
from .time_series_antarctic_melt import TimeSeriesAntarcticMelt
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