From 459a11f7530aab54173fb5bb90fa7ee88adddcdb Mon Sep 17 00:00:00 2001 From: Alexander Hager Date: Fri, 18 Oct 2024 14:10:20 -0600 Subject: [PATCH 1/8] Add Sea Ice Extent Geojson Files --- .../region.geojson | 17 ++++++ .../region.geojson | 17 ++++++ .../region.geojson | 17 ++++++ .../region.geojson | 17 ++++++ .../region.geojson | 18 ++++++ .../region.geojson | 17 ++++++ .../region.geojson | 17 ++++++ .../region.geojson | 18 ++++++ .../region.geojson | 17 ++++++ .../region.geojson | 17 ++++++ .../region.geojson | 17 ++++++ .../region.geojson | 17 ++++++ geometric_features/features_and_tags.json | 56 +++++++++++++++++++ 13 files changed, 262 insertions(+) create mode 100644 geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson create mode 100644 geometric_data/seaice/region/August_Historical_Median_Sea_Ice_Extent/region.geojson create mode 100644 geometric_data/seaice/region/December_Historical_Median_Sea_Ice_Extent/region.geojson create mode 100644 geometric_data/seaice/region/February_Historical_Median_Sea_Ice_Extent/region.geojson create mode 100644 geometric_data/seaice/region/January_Historical_Median_Sea_Ice_Extent/region.geojson create mode 100644 geometric_data/seaice/region/July_Historical_Median_Sea_Ice_Extent/region.geojson create mode 100644 geometric_data/seaice/region/June_Historical_Median_Sea_Ice_Extent/region.geojson create mode 100644 geometric_data/seaice/region/March_Historical_Median_Sea_Ice_Extent/region.geojson create mode 100644 geometric_data/seaice/region/May_Historical_Median_Sea_Ice_Extent/region.geojson create mode 100644 geometric_data/seaice/region/November_Historical_Median_Sea_Ice_Extent/region.geojson create mode 100644 geometric_data/seaice/region/October_Historical_Median_Sea_Ice_Extent/region.geojson create mode 100644 geometric_data/seaice/region/September_Historical_Median_Sea_Ice_Extent/region.geojson diff --git a/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson new file mode 100644 index 00000000..d3cd108c --- /dev/null +++ b/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson @@ -0,0 +1,17 @@ +{ + "type": "FeatureCollection", + "features": [ + { + "type": "Feature", + "properties": { + "name": "April Median Sea Ice Extent (1981-2010)", + "tags": "QGreenland;Historical_Sea_Ice_Extent", + "object": "region", + "component": "sea ice", + "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/" + }, + "geometry": { + "type": "Polygon", + "coordinates": [ + [ +[ 167.421064762506944, 60.309570008868754 ], [ 167.404543488595436, 60.229439638934416 ], [ 167.570683222227274, 60.091341992215085 ], [ 167.769893204505905, 60.113082562565815 ], [ 168.169211151477782, 60.155530411368204 ], [ 169.04915893542946, 60.03634915926375 ], [ 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b/geometric_features/features_and_tags.json @@ -1918,5 +1918,61 @@ "standard_transport_sections" ] } + }, + "seaice": { + "region": { + "April Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ], + "August Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ], + "December Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ], + "February Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ], + "January Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ], + "July Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ], + "June Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ], + "March Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ], + "May Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ], + "November Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ], + "March Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ], + "October Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ], + "September Historical Median Sea Ice Extent":[ + "QGreenland", + "Historical_Sea_Ice_Extent" + ] + } } } From 26d6b6d109173ebc4b01b9455eb701f38d2aa231 Mon Sep 17 00:00:00 2001 From: Alexander Hager Date: Fri, 18 Oct 2024 15:00:27 -0600 Subject: [PATCH 2/8] Add historical sea ice extent aggregator --- geometric_features/aggregation/__init__.py | 5 ++- .../aggregation/seaice/__init__.py | 1 + .../aggregation/seaice/historical_sea_ice.py | 33 +++++++++++++++++++ geometric_features/geometric_features.py | 8 ++--- geometric_features/test/test_aggregation.py | 9 +++-- 5 files changed, 48 insertions(+), 8 deletions(-) create mode 100644 geometric_features/aggregation/seaice/historical_sea_ice.py diff --git a/geometric_features/aggregation/__init__.py b/geometric_features/aggregation/__init__.py index 5776b596..f724c1d7 100644 --- a/geometric_features/aggregation/__init__.py +++ b/geometric_features/aggregation/__init__.py @@ -1,7 +1,7 @@ from geometric_features.aggregation.ocean import basins, subbasins, \ antarctic, ismip6_greenland, ice_shelves, ismip6, arctic as arctic_ocean, \ transport, arctic_transport, moc -from geometric_features.aggregation.seaice import arctic as arctic_seaice +from geometric_features.aggregation.seaice import qgreenland, arctic as arctic_seaice from geometric_features.aggregation.landice import nasa_greenland def get_aggregator_by_name(region_group): @@ -63,6 +63,9 @@ def get_aggregator_by_name(region_group): 'MOC Basins': {'prefix': 'mocBasins', 'date': '20210623', 'function': moc}, + 'Historical Sea Ice': {'prefix': 'historicalSeaIce', + 'date': '20241018', + 'function': qgreenland}, 'Transport Transects': {'prefix': 'transportTransects', 'date': '20210323', 'function': transport}, diff --git a/geometric_features/aggregation/seaice/__init__.py b/geometric_features/aggregation/seaice/__init__.py index 5f00cb4f..b2315d2b 100644 --- a/geometric_features/aggregation/seaice/__init__.py +++ b/geometric_features/aggregation/seaice/__init__.py @@ -1 +1,2 @@ from geometric_features.aggregation.seaice.arctic_regions import arctic +from geometric_features.aggregation.seaice.historical_sea_ice import qgreenland diff --git a/geometric_features/aggregation/seaice/historical_sea_ice.py b/geometric_features/aggregation/seaice/historical_sea_ice.py new file mode 100644 index 00000000..b388ded5 --- /dev/null +++ b/geometric_features/aggregation/seaice/historical_sea_ice.py @@ -0,0 +1,33 @@ +def qgreenland(gf): + """ + Aggregate Greenland continental shelf regions similar to ISMIP6 + Parameters + ---------- + gf : geometric_features.GeometricFeatures + An object that knows how to download and read geometric features + Returns + ------- + fc : geometric_features.FeatureCollection + The new feature collection with antarctic regions + """ + # Authors + # ------- + # Alex Hager + + regions = ['April Historical Median Sea Ice Extent', + 'August Historical Median Sea Ice Extent', + 'December Historical Median Sea Ice Extent', + 'February Historical Median Sea Ice Extent', + 'January Historical Median Sea Ice Extent', + 'July Historical Median Sea Ice Extent', + 'June Historical Median Sea Ice Extent', + 'March Historical Median Sea Ice Extent', + 'May Historical Median Sea Ice Extent', + 'November Historical Median Sea Ice Extent', + 'October Historical Median Sea Ice Extent', + 'September Historical Median Sea Ice Extent' + ] + fc = gf.read(componentName='seaice', objectType='region', + featureNames=regions) + + return fc diff --git a/geometric_features/geometric_features.py b/geometric_features/geometric_features.py index b48299e6..060f85da 100644 --- a/geometric_features/geometric_features.py +++ b/geometric_features/geometric_features.py @@ -80,7 +80,7 @@ def read(self, componentName, objectType, featureNames=None, tags=None, Parameters ---------- - componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', 'natural_earth', 'ocean'} + componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', 'natural_earth', 'ocean','seaice'} The component from which to retrieve the geometric features objectType : {'point', 'transect', 'region'} @@ -173,7 +173,7 @@ def _download_geometric_features(self, componentName, objectType, Parameters ---------- - componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', 'natural_earth', 'ocean'} + componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', 'natural_earth', 'ocean','seaice'} The component from which to retrieve the geometric features objectType : {'point', 'transect', 'region'} @@ -223,7 +223,7 @@ def _get_feature_names(self, componentName, objectType, featureNames, Parameters ---------- - componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', 'natural_earth', 'ocean'} + componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', 'natural_earth', 'ocean','seaice'} The component from which to retrieve the geometric features objectType : {'point', 'transect', 'region'} @@ -298,7 +298,7 @@ def _get_file_name(componentName, objectType, featureName): Parameters ---------- - componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', 'natural_earth', 'ocean'} + componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', 'natural_earth', 'ocean','seaice'} The component from which to retrieve the geometric features objectType : {'point', 'transect', 'region'} diff --git a/geometric_features/test/test_aggregation.py b/geometric_features/test/test_aggregation.py index 0a821d1a..3d6585cb 100644 --- a/geometric_features/test/test_aggregation.py +++ b/geometric_features/test/test_aggregation.py @@ -4,8 +4,7 @@ from geometric_features import GeometricFeatures from geometric_features.aggregation import get_aggregator_by_name, basins, \ subbasins, antarctic, ice_shelves, ismip6, arctic_ocean, transport, \ - arctic_transport, moc, arctic_seaice, nasa_greenland, ismip6_greenland - + arctic_transport, moc, arctic_seaice, qgreenland, nasa_greenland, ismip6_greenland @pytest.mark.usefixtures('loaddatadir') class TestAggregation(TestCase): @@ -14,7 +13,7 @@ def test_get_aggregator_by_name(self): gf = GeometricFeatures() names = ['Antarctic Regions', 'Arctic Ocean Regions', 'ISMIP6 Greenland Regions', 'NASA Greenland Regions', 'Arctic Sea Ice Regions', 'Ocean Basins', - 'Ice Shelves', 'Ocean Subbasins', 'ISMIP6 Regions', 'MOC Basins', + 'Ice Shelves', 'Ocean Subbasins', 'ISMIP6 Regions', 'MOC Basins', 'Historical Sea Ice', 'Transport Transects', 'Arctic Transport Transects'] for name in names: @@ -61,6 +60,10 @@ def test_arctic_transport(self): gf = GeometricFeatures() arctic_transport(gf) + def test_qgreenland(self): + gf = GeometricFeatures() + qgreenland(gf) + def test_nasa_greenland(self): gf = GeometricFeatures() nasa_greenland(gf) From 3e6f64b8f127074f1e01945581a6a362fc789392 Mon Sep 17 00:00:00 2001 From: Alexander Hager Date: Fri, 18 Oct 2024 16:15:26 -0600 Subject: [PATCH 3/8] Update Docs --- docs/aggregation.rst | 15 +++++++++++++++ docs/api.rst | 2 +- 2 files changed, 16 insertions(+), 1 deletion(-) diff --git a/docs/aggregation.rst b/docs/aggregation.rst index 0d74e927..709ffd4f 100644 --- a/docs/aggregation.rst +++ b/docs/aggregation.rst @@ -27,6 +27,8 @@ the following group names: * Ocean Subbasins +* Historical Sea Ice + * ISMIP6 Regions * Transport Transects @@ -112,6 +114,19 @@ have also been altered so that all glaciers terminating in an individual fjord are from the same drainage basin. Regions cover both landice and ocean, and could be used for either component. +Historical Sea Ice +~~~~~~~~~~~~~~~~~~ + +The function :py:func:`geometric_features.aggregation.seaice.qgreenland` +aggregates the historical monthly median sea ice extents taken from +the QGreenland dataset: January Historical Median Sea Ice Extent, +February Historical Median Sea Ice Extent, March Historical Median Sea Ice Extent, +April Historical Median Sea Ice Extent, May Historical Median Sea Ice Extent, +June Historical Median Sea Ice Extent, July Historical Median Sea Ice Extent, +August Historical Median Sea Ice Extent, September Historical Median Sea Ice Extent, +October Historical Median Sea Ice Extent, November Historical Median Sea Ice Extent, +December Historical Median Sea Ice Extent. + Ice-shelf Regions ~~~~~~~~~~~~~~~~~ diff --git a/docs/api.rst b/docs/api.rst index 7d7d7e8c..e625a021 100644 --- a/docs/api.rst +++ b/docs/api.rst @@ -100,5 +100,5 @@ Aggregation aggregation.seaice aggregation.seaice.arctic - + aggregation.seaice.qgreenland aggregation.landice.nasa_greenland From 1bd8c9b5e418bbca85f854cca95895399593a70c Mon Sep 17 00:00:00 2001 From: Alexander Hager Date: Wed, 6 Nov 2024 14:39:38 -0700 Subject: [PATCH 4/8] Apply antimeridian fix Fixes regions geometries at the antimeridian --- .../region.geojson | 2159 +++++++++++++++- .../region.geojson | 1313 +++++++++- .../region.geojson | 1909 +++++++++++++- .../region.geojson | 2233 +++++++++++++++- .../region.geojson | 2286 ++++++++++++++++- .../region.geojson | 2213 +++++++++++++++- .../region.geojson | 1505 ++++++++++- .../region.geojson | 2262 +++++++++++++++- .../region.geojson | 1861 +++++++++++++- .../region.geojson | 1437 ++++++++++- .../region.geojson | 1039 +++++++- .../region.geojson | 1277 ++++++++- 12 files changed, 21407 insertions(+), 87 deletions(-) diff --git a/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson index d3cd108c..e80ef8b7 100644 --- a/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson @@ -1,17 +1,2160 @@ { "type": "FeatureCollection", + "groupName": "enterGroupName", "features": [ - { - "type": "Feature", + { + "type": "Feature", "properties": { - "name": "April Median Sea Ice Extent (1981-2010)", + "name": "December Median Sea Ice Extent (1981-2010)", "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/" - }, - "geometry": { - "type": "Polygon", + "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "history": "11/06/24 14:26 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region : 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b/geometric_data/seaice/region/May_Historical_Median_Sea_Ice_Extent/region.geojson index e6d69750..4a50f324 100644 --- a/geometric_data/seaice/region/May_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/May_Historical_Median_Sea_Ice_Extent/region.geojson @@ -1,17 +1,1864 @@ { "type": "FeatureCollection", + "groupName": "enterGroupName", "features": [ - { - "type": "Feature", + { + "type": "Feature", "properties": { "name": "May Median Sea Ice Extent (1981-2010)", "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/" - }, - "geometry": { - "type": "Polygon", + "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "history": "11/06/24 12:57 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f 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diff --git a/geometric_data/seaice/region/September_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/September_Historical_Median_Sea_Ice_Extent/region.geojson index 3451b48e..a0023ab0 100644 --- a/geometric_data/seaice/region/September_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/September_Historical_Median_Sea_Ice_Extent/region.geojson @@ -1,17 +1,1280 @@ { "type": "FeatureCollection", + "groupName": "enterGroupName", "features": [ - { - "type": "Feature", + { + "type": "Feature", "properties": { "name": "September Median Sea Ice Extent (1981-2010)", "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "seaice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/" - }, - "geometry": { - "type": "Polygon", + "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "history": "11/06/24 12:58 : ch-fe2 : ahager : 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[ + -102.72865, + 70.134034 + ], + [ + -100.939091, + 70.407179 + ], + [ + -100.445622, + 70.38465 + ] + ] + ] + } + } + ] +} \ No newline at end of file From 0878c5f7448cbdee4c71560246ec1060041e6460 Mon Sep 17 00:00:00 2001 From: Alexander Hager Date: Thu, 7 Nov 2024 15:09:49 -0700 Subject: [PATCH 5/8] Fix Month Name Typo --- .../April_Historical_Median_Sea_Ice_Extent/region.geojson | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson index e80ef8b7..b03daeac 100644 --- a/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson @@ -5,7 +5,7 @@ { "type": "Feature", "properties": { - "name": "December Median Sea Ice Extent (1981-2010)", + "name": "April Median Sea Ice Extent (1981-2010)", "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", @@ -2157,4 +2157,4 @@ } } ] -} \ No newline at end of file +} From 86588bb66161f2f837d70b4ba27ec1b8f7ce60d9 Mon Sep 17 00:00:00 2001 From: Alexander Hager Date: Thu, 7 Nov 2024 18:12:13 -0700 Subject: [PATCH 6/8] Add dataset doi to metadata --- .../April_Historical_Median_Sea_Ice_Extent/region.geojson | 2 +- .../August_Historical_Median_Sea_Ice_Extent/region.geojson | 4 ++-- .../December_Historical_Median_Sea_Ice_Extent/region.geojson | 4 ++-- .../February_Historical_Median_Sea_Ice_Extent/region.geojson | 4 ++-- .../January_Historical_Median_Sea_Ice_Extent/region.geojson | 4 ++-- .../July_Historical_Median_Sea_Ice_Extent/region.geojson | 4 ++-- .../June_Historical_Median_Sea_Ice_Extent/region.geojson | 4 ++-- .../March_Historical_Median_Sea_Ice_Extent/region.geojson | 4 ++-- .../May_Historical_Median_Sea_Ice_Extent/region.geojson | 4 ++-- .../November_Historical_Median_Sea_Ice_Extent/region.geojson | 4 ++-- .../October_Historical_Median_Sea_Ice_Extent/region.geojson | 4 ++-- .../September_Historical_Median_Sea_Ice_Extent/region.geojson | 4 ++-- 12 files changed, 23 insertions(+), 23 deletions(-) diff --git a/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson index b03daeac..c4084275 100644 --- a/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/April_Historical_Median_Sea_Ice_Extent/region.geojson @@ -9,7 +9,7 @@ "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "author": "Modified by Alex Hager from the QGreenland dataset (doi:10.5281/zenodo.12823307)", "history": "11/06/24 14:26 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f april.geojson;" }, "geometry": { diff --git a/geometric_data/seaice/region/August_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/August_Historical_Median_Sea_Ice_Extent/region.geojson index 75be893e..741a6595 100644 --- a/geometric_data/seaice/region/August_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/August_Historical_Median_Sea_Ice_Extent/region.geojson @@ -9,7 +9,7 @@ "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "author": "Modified by Alex Hager from the QGreenland dataset (doi:10.5281/zenodo.12823307)", "history": "11/06/24 12:43 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region/August_Historical_Median_Sea_Ice_Extent : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f region.geojson;" }, "geometry": { @@ -1313,4 +1313,4 @@ } } ] -} \ No newline at end of file +} diff --git a/geometric_data/seaice/region/December_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/December_Historical_Median_Sea_Ice_Extent/region.geojson index 43c28349..1393d929 100644 --- a/geometric_data/seaice/region/December_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/December_Historical_Median_Sea_Ice_Extent/region.geojson @@ -9,7 +9,7 @@ "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "author": "Modified by Alex Hager from the QGreenland dataset (doi:10.5281/zenodo.12823307)", "history": "11/06/24 12:55 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f December_Historical_Median_Sea_Ice_Extent/region.geojson;" }, "geometry": { @@ -1909,4 +1909,4 @@ } } ] -} \ No newline at end of file +} diff --git a/geometric_data/seaice/region/February_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/February_Historical_Median_Sea_Ice_Extent/region.geojson index 9dd0f3ff..b250b28a 100644 --- a/geometric_data/seaice/region/February_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/February_Historical_Median_Sea_Ice_Extent/region.geojson @@ -9,7 +9,7 @@ "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "author": "Modified by Alex Hager from the QGreenland dataset (doi:10.5281/zenodo.12823307)", "history": "11/06/24 12:55 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f February_Historical_Median_Sea_Ice_Extent/region.geojson;" }, "geometry": { @@ -2233,4 +2233,4 @@ } } ] -} \ No newline at end of file +} diff --git a/geometric_data/seaice/region/January_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/January_Historical_Median_Sea_Ice_Extent/region.geojson index ca72d666..97e1603a 100644 --- a/geometric_data/seaice/region/January_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/January_Historical_Median_Sea_Ice_Extent/region.geojson @@ -9,7 +9,7 @@ "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "author": "Modified by Alex Hager from the QGreenland dataset (doi:10.5281/zenodo.12823307)", "history": "11/06/24 12:56 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f January_Historical_Median_Sea_Ice_Extent/region.geojson;" }, "geometry": { @@ -2285,4 +2285,4 @@ } } ] -} \ No newline at end of file +} diff --git a/geometric_data/seaice/region/July_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/July_Historical_Median_Sea_Ice_Extent/region.geojson index 207dd00f..7ad4b6c8 100644 --- a/geometric_data/seaice/region/July_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/July_Historical_Median_Sea_Ice_Extent/region.geojson @@ -9,7 +9,7 @@ "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "author": "Modified by Alex Hager from the QGreenland dataset (doi:10.5281/zenodo.12823307)", "history": "11/06/24 12:56 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f July_Historical_Median_Sea_Ice_Extent/region.geojson;" }, "geometry": { @@ -2213,4 +2213,4 @@ } } ] -} \ No newline at end of file +} diff --git a/geometric_data/seaice/region/June_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/June_Historical_Median_Sea_Ice_Extent/region.geojson index 60720593..595fe46b 100644 --- a/geometric_data/seaice/region/June_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/June_Historical_Median_Sea_Ice_Extent/region.geojson @@ -9,7 +9,7 @@ "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "author": "Modified by Alex Hager from the QGreenland dataset (doi:10.5281/zenodo.12823307)", "history": "11/06/24 12:56 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f June_Historical_Median_Sea_Ice_Extent/region.geojson;" }, "geometry": { @@ -1505,4 +1505,4 @@ } } ] -} \ No newline at end of file +} diff --git a/geometric_data/seaice/region/March_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/March_Historical_Median_Sea_Ice_Extent/region.geojson index 5e864f0a..02aea767 100644 --- a/geometric_data/seaice/region/March_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/March_Historical_Median_Sea_Ice_Extent/region.geojson @@ -9,7 +9,7 @@ "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "author": "Modified by Alex Hager from the QGreenland dataset (doi:10.5281/zenodo.12823307)", "history": "11/06/24 12:57 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f March_Historical_Median_Sea_Ice_Extent/region.geojson;" }, "geometry": { @@ -2261,4 +2261,4 @@ } } ] -} \ No newline at end of file +} diff --git a/geometric_data/seaice/region/May_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/May_Historical_Median_Sea_Ice_Extent/region.geojson index 4a50f324..3561e355 100644 --- a/geometric_data/seaice/region/May_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/May_Historical_Median_Sea_Ice_Extent/region.geojson @@ -9,7 +9,7 @@ "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "author": "Modified by Alex Hager from the QGreenland dataset (doi:10.5281/zenodo.12823307)", "history": "11/06/24 12:57 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f May_Historical_Median_Sea_Ice_Extent/region.geojson;" }, "geometry": { @@ -1861,4 +1861,4 @@ } } ] -} \ No newline at end of file +} diff --git a/geometric_data/seaice/region/November_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/November_Historical_Median_Sea_Ice_Extent/region.geojson index cf6e02a5..c8ab6549 100644 --- a/geometric_data/seaice/region/November_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/November_Historical_Median_Sea_Ice_Extent/region.geojson @@ -9,7 +9,7 @@ "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "author": "Modified by Alex Hager from the QGreenland dataset (doi:10.5281/zenodo.12823307)", "history": "11/06/24 12:57 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f November_Historical_Median_Sea_Ice_Extent/region.geojson;" }, "geometry": { @@ -1437,4 +1437,4 @@ } } ] -} \ No newline at end of file +} diff --git a/geometric_data/seaice/region/October_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/October_Historical_Median_Sea_Ice_Extent/region.geojson index c3ae1ab6..30c25222 100644 --- a/geometric_data/seaice/region/October_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/October_Historical_Median_Sea_Ice_Extent/region.geojson @@ -9,7 +9,7 @@ "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "sea ice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "author": "Modified by Alex Hager from the QGreenland dataset (doi:10.5281/zenodo.12823307)", "history": "11/06/24 14:38 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region/October_Historical_Median_Sea_Ice_Extent : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f region.geojson;" }, "geometry": { @@ -1039,4 +1039,4 @@ } } ] -} \ No newline at end of file +} diff --git a/geometric_data/seaice/region/September_Historical_Median_Sea_Ice_Extent/region.geojson b/geometric_data/seaice/region/September_Historical_Median_Sea_Ice_Extent/region.geojson index a0023ab0..591826f1 100644 --- a/geometric_data/seaice/region/September_Historical_Median_Sea_Ice_Extent/region.geojson +++ b/geometric_data/seaice/region/September_Historical_Median_Sea_Ice_Extent/region.geojson @@ -9,7 +9,7 @@ "tags": "QGreenland;Historical_Sea_Ice_Extent", "object": "region", "component": "seaice", - "author": "Modified by Alex Hager from https://github.com/nsidc/qgreenland/", + "author": "Modified by Alex Hager from the QGreenland dataset (doi:10.5281/zenodo.12823307)", "history": "11/06/24 12:58 : ch-fe2 : ahager : /usr/projects/climate/ahager/geometric_features/geometric_data/seaice/region : /usr/projects/climate/ahager/scripts/fix_antimeridian_geojson.py -f September_Historical_Median_Sea_Ice_Extent/region.geojson;" }, "geometry": { @@ -1277,4 +1277,4 @@ } } ] -} \ No newline at end of file +} From 7b48acae28c068c191e4f3c33457d93937ac785f Mon Sep 17 00:00:00 2001 From: Alexander Hager Date: Fri, 15 Nov 2024 16:07:37 -0700 Subject: [PATCH 7/8] Minor PR review comments --- docs/aggregation.rst | 2 +- geometric_features/aggregation/__init__.py | 5 +++-- .../aggregation/seaice/historical_sea_ice.py | 4 +++- geometric_features/geometric_features.py | 12 ++++++++---- 4 files changed, 15 insertions(+), 8 deletions(-) diff --git a/docs/aggregation.rst b/docs/aggregation.rst index 709ffd4f..995d6cc4 100644 --- a/docs/aggregation.rst +++ b/docs/aggregation.rst @@ -119,7 +119,7 @@ Historical Sea Ice The function :py:func:`geometric_features.aggregation.seaice.qgreenland` aggregates the historical monthly median sea ice extents taken from -the QGreenland dataset: January Historical Median Sea Ice Extent, +the QGreenland dataset (doi: doi:10.5281/zenodo.12823307): January Historical Median Sea Ice Extent, February Historical Median Sea Ice Extent, March Historical Median Sea Ice Extent, April Historical Median Sea Ice Extent, May Historical Median Sea Ice Extent, June Historical Median Sea Ice Extent, July Historical Median Sea Ice Extent, diff --git a/geometric_features/aggregation/__init__.py b/geometric_features/aggregation/__init__.py index f724c1d7..df09bf69 100644 --- a/geometric_features/aggregation/__init__.py +++ b/geometric_features/aggregation/__init__.py @@ -1,8 +1,9 @@ from geometric_features.aggregation.ocean import basins, subbasins, \ antarctic, ismip6_greenland, ice_shelves, ismip6, arctic as arctic_ocean, \ transport, arctic_transport, moc -from geometric_features.aggregation.seaice import qgreenland, arctic as arctic_seaice from geometric_features.aggregation.landice import nasa_greenland +from geometric_features.aggregation.seaice import arctic as arctic_seaice +from geometric_features.aggregation.seaice import qgreenland as qgreenland_seaice def get_aggregator_by_name(region_group): """ @@ -65,7 +66,7 @@ def get_aggregator_by_name(region_group): 'function': moc}, 'Historical Sea Ice': {'prefix': 'historicalSeaIce', 'date': '20241018', - 'function': qgreenland}, + 'function': qgreenland_seaice}, 'Transport Transects': {'prefix': 'transportTransects', 'date': '20210323', 'function': transport}, diff --git a/geometric_features/aggregation/seaice/historical_sea_ice.py b/geometric_features/aggregation/seaice/historical_sea_ice.py index b388ded5..2001b118 100644 --- a/geometric_features/aggregation/seaice/historical_sea_ice.py +++ b/geometric_features/aggregation/seaice/historical_sea_ice.py @@ -1,6 +1,8 @@ def qgreenland(gf): """ - Aggregate Greenland continental shelf regions similar to ISMIP6 + Aggregate regions defining median monthly arctic sea ice extent (1981-2010) + from the QGreenland dataset (doi:10.5281/zenodo.12823307). + Parameters ---------- gf : geometric_features.GeometricFeatures diff --git a/geometric_features/geometric_features.py b/geometric_features/geometric_features.py index 060f85da..6cec0e8f 100644 --- a/geometric_features/geometric_features.py +++ b/geometric_features/geometric_features.py @@ -80,7 +80,8 @@ def read(self, componentName, objectType, featureNames=None, tags=None, Parameters ---------- - componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', 'natural_earth', 'ocean','seaice'} + componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', + 'natural_earth', 'ocean','seaice'} The component from which to retrieve the geometric features objectType : {'point', 'transect', 'region'} @@ -173,7 +174,8 @@ def _download_geometric_features(self, componentName, objectType, Parameters ---------- - componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', 'natural_earth', 'ocean','seaice'} + componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', + 'natural_earth', 'ocean','seaice'} The component from which to retrieve the geometric features objectType : {'point', 'transect', 'region'} @@ -223,7 +225,8 @@ def _get_feature_names(self, componentName, objectType, featureNames, Parameters ---------- - componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', 'natural_earth', 'ocean','seaice'} + componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', + 'natural_earth', 'ocean','seaice'} The component from which to retrieve the geometric features objectType : {'point', 'transect', 'region'} @@ -298,7 +301,8 @@ def _get_file_name(componentName, objectType, featureName): Parameters ---------- - componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', 'natural_earth', 'ocean','seaice'} + componentName : {'bedmachine', 'bedmap2', 'iceshelves', 'landice', + 'natural_earth', 'ocean','seaice'} The component from which to retrieve the geometric features objectType : {'point', 'transect', 'region'} From a5d04ef1bbb05e0b2d28eb095fe7b9f97e4d9dce Mon Sep 17 00:00:00 2001 From: Alexander Hager Date: Tue, 19 Nov 2024 12:05:11 -0700 Subject: [PATCH 8/8] Fix aggregation name error --- geometric_features/test/test_aggregation.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/geometric_features/test/test_aggregation.py b/geometric_features/test/test_aggregation.py index 3d6585cb..1e0fd8b6 100644 --- a/geometric_features/test/test_aggregation.py +++ b/geometric_features/test/test_aggregation.py @@ -4,7 +4,7 @@ from geometric_features import GeometricFeatures from geometric_features.aggregation import get_aggregator_by_name, basins, \ subbasins, antarctic, ice_shelves, ismip6, arctic_ocean, transport, \ - arctic_transport, moc, arctic_seaice, qgreenland, nasa_greenland, ismip6_greenland + arctic_transport, moc, arctic_seaice, qgreenland_seaice, nasa_greenland, ismip6_greenland @pytest.mark.usefixtures('loaddatadir') class TestAggregation(TestCase): @@ -62,7 +62,7 @@ def test_arctic_transport(self): def test_qgreenland(self): gf = GeometricFeatures() - qgreenland(gf) + qgreenland_seaice(gf) def test_nasa_greenland(self): gf = GeometricFeatures()