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Capture and use slice encoding axis information
- When importing from DICOM, fill field 'SliceEncodingDirection', which is defined as part of BIDS. - Whenever MRtrix3 performs a permutation of image axes (whether implicit or explicit), additionally adjust this field, just as is performed for DW and PE schemes. - If attempting to run dwipreproc with slice-to-volume correction in eddy, ensure that if the slice encoding direction is specified, it corresponds to the third axis (which is what eddy will assume). Permutation of axes as part of dwipreproc may be addressed at a later date.
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