A catalog of appyter notebooks
jinja2-enabled jupyter notebooks
Updated ARCHS4 repository
A collection of useful functions for bioinformatics data analysis
Python Jupyter notebooks for Enrichr species databases
A front-end UI for demoing API integration
Signature Commons Metadata API
A community-driven peer review system for bioRxiv.
Appyter for enrichr canvases, scatter plots, and Manhattan plots
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Scripts and Notebooks used for analyzing the Zebrafish RNA-Seq data from Dr. Gelb
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
Preparing and controlling signature commons with existing data / store
Load matrix data dynamically from basic H5 file structure through API. Allows basic slicing.
Benchmarks of dimensionality reduction algorithms
An interactive heatmap visualization built using D3.js
A docker-compose for deploying the entire signature-commons stack
JSON-Schema validators for signature commons entities
Single-cell RNA-seq data analysis and visualization
A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.
Large-scale visualization of drug-induced transcriptomic signatures
The Clustergrammer interactive Jupyter notebook widget
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