MULTIOMICS2TARGETS:

Expression2Kinases & Target Ranger

Currently hosted at: https://multiomics2targets.maayanlab.cloud/

Getting Started

To run in development:

# prepare .env file & review
cp .env.example .env
# create and activate python3.8 (or python3.9) virtual environment
python3.9 -m venv venv
source venv/bin/activate
pip install -r requirements.txt
# install relevant R dependencies
R -e "source('setup.R')"
# run in development
appyter main.ipynb

Running locally

To run the Multiomics2Targets app locally first ensure that Docker is installed, and then run the following command:

docker run --device /dev/fuse --cap-add SYS_ADMIN --security-opt apparmor:unconfined -p 5000:5000 -it maayanlab/x2ktr:0.1.06

To receive automatically generated descriptions of the results, you need to provide an OpenAI API Key as an environment variable:

docker run --device /dev/fuse --cap-add SYS_ADMIN --security-opt apparmor:unconfined -p 5000:5000 -e OPENAI_API_KEY=sk-… -it maayanlab/x2ktr:0.1.06