Full web application code for Assemblytics
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bin
css
js
resources
user_data
user_uploads
.gitignore
LICENSE
README.md
analysis.php
check_progress.php
cite.php
contact.php
file_upload.php
header.html
index.php
input_validation.php
interactive_dotplot.php
list_plots.php
run_algorithm.php
title.html

README.md

Assemblytics (full web application)

This repo contains the full Assemblytics web application. The web app is running on assemblytics.com, and the command-line version is available at https://github.com/marianattestad/assemblytics This repository exists so you can install it on your own servers or locally on your computer if need be. The code here includes the interactive dot plot (which you can't use from the command-line version).

Dependencies:

  • R
    • ggplot
    • plyr
  • Python
    • argparse
    • numpy

Notes for installation:

  • Make sure to open up permissions in user_uploads and user_data so the webserver can read and write there.
  • It does not contain the examples as some of these are huge files.