SplitThreader is an interactive web application for analysis of rearrangements in a cancer genome.
SplitThreader is available online at http://splitthreader.com.
If you need to deploy SplitThreader locally, here are the steps:
Install XAMPP on your computer (includes Apache and PHP)
Using the Terminal, go to the htdocs folder created during the install. On a Mac, the folder is located at /Applications/XAMPP/htdocs/
Clone this repository into the htdocs folder
git clone https://github.com/marianattestad/splitthreader
Open up permissions for user_data and user_uploads so new files can be created in those directories
chmod 777 user_uploads chmod 777 user_data
Then go to a web browser such as Chrome, Firefox, or Safari (Not tested on IE) and type into the url box:
You may have to change the Python path for apache in order to be able to run SplitThreader