From 51896c5c628f02bce120269c998ddd693663cb56 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 26 Dec 2025 19:38:16 +0000 Subject: [PATCH 1/9] feat(pygal): implement silhouette-basic MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit 馃 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- .../silhouette-basic/implementations/pygal.py | 98 +++++++++++++++++++ 1 file changed, 98 insertions(+) create mode 100644 plots/silhouette-basic/implementations/pygal.py diff --git a/plots/silhouette-basic/implementations/pygal.py b/plots/silhouette-basic/implementations/pygal.py new file mode 100644 index 0000000000..444b48eb0f --- /dev/null +++ b/plots/silhouette-basic/implementations/pygal.py @@ -0,0 +1,98 @@ +"""pyplots.ai +silhouette-basic: Silhouette Plot +Library: pygal | Python 3.13 +Quality: pending | Created: 2025-12-26 +""" + +import numpy as np +import pygal +from pygal.style import Style +from sklearn.cluster import KMeans +from sklearn.datasets import load_iris +from sklearn.metrics import silhouette_samples, silhouette_score + + +# Data - Cluster iris dataset into 3 groups +np.random.seed(42) +iris = load_iris() +X = iris.data +kmeans = KMeans(n_clusters=3, random_state=42, n_init=10) +cluster_labels = kmeans.fit_predict(X) + +# Compute silhouette scores +silhouette_vals = silhouette_samples(X, cluster_labels) +avg_silhouette = silhouette_score(X, cluster_labels) +n_clusters = 3 + +# Colors for each cluster (Python Blue, Python Yellow, Red) +cluster_colors = ["#306998", "#FFD43B", "#E74C3C"] + +# Custom style for pyplots +custom_style = Style( + background="white", + plot_background="white", + foreground="#333333", + foreground_strong="#333333", + foreground_subtle="#666666", + colors=tuple(cluster_colors), + title_font_size=48, + label_font_size=32, + major_label_font_size=28, + legend_font_size=28, + value_font_size=24, + stroke_width=0, +) + +# Process and sort silhouette values within each cluster (descending for visual appeal) +all_bars = [] +cluster_avgs = {} + +for i in range(n_clusters): + cluster_silhouette_vals = silhouette_vals[cluster_labels == i] + cluster_silhouette_vals = np.sort(cluster_silhouette_vals)[::-1] # Descending + cluster_avgs[i] = np.mean(cluster_silhouette_vals) + + for val in cluster_silhouette_vals: + all_bars.append((i, val)) + +# Create horizontal bar chart for silhouette plot +chart = pygal.HorizontalStackedBar( + width=4800, + height=2700, + style=custom_style, + title=f"silhouette-basic \u00b7 pygal \u00b7 pyplots.ai\nOverall Average Silhouette Score: {avg_silhouette:.3f}", + x_title="Silhouette Coefficient", + y_title="Samples (grouped by cluster)", + show_legend=True, + legend_at_bottom=True, + legend_at_bottom_columns=3, + show_y_guides=False, + show_x_guides=True, + print_values=False, + range=(-0.2, 1.0), + spacing=0, + margin=50, + margin_bottom=150, + stack_from_top=True, + show_y_labels=False, # Hide crowded sample labels +) + +# Build data series for each cluster +cluster_names = [ + f"Cluster 0 (avg: {cluster_avgs[0]:.3f})", + f"Cluster 1 (avg: {cluster_avgs[1]:.3f})", + f"Cluster 2 (avg: {cluster_avgs[2]:.3f})", +] + +for cluster_idx in range(n_clusters): + series_data = [] + for c, val in all_bars: + if c == cluster_idx: + series_data.append(val) + else: + series_data.append(None) + chart.add(cluster_names[cluster_idx], series_data) + +# Save outputs +chart.render_to_file("plot.html") +chart.render_to_png("plot.png") From 2bc372884bb526d73668506f75ef6f0c4098c484 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 26 Dec 2025 19:38:32 +0000 Subject: [PATCH 2/9] chore(pygal): add metadata for silhouette-basic --- plots/silhouette-basic/metadata/pygal.yaml | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) create mode 100644 plots/silhouette-basic/metadata/pygal.yaml diff --git a/plots/silhouette-basic/metadata/pygal.yaml b/plots/silhouette-basic/metadata/pygal.yaml new file mode 100644 index 0000000000..31baaa0c5b --- /dev/null +++ b/plots/silhouette-basic/metadata/pygal.yaml @@ -0,0 +1,19 @@ +# Per-library metadata for pygal implementation of silhouette-basic +# Auto-generated by impl-generate.yml + +library: pygal +specification_id: silhouette-basic +created: '2025-12-26T19:38:31Z' +updated: '2025-12-26T19:38:31Z' +generated_by: claude-opus-4-5-20251101 +workflow_run: 20528204488 +issue: 0 +python_version: 3.13.11 +library_version: 3.1.0 +preview_url: https://storage.googleapis.com/pyplots-images/plots/silhouette-basic/pygal/plot.png +preview_thumb: https://storage.googleapis.com/pyplots-images/plots/silhouette-basic/pygal/plot_thumb.png +preview_html: https://storage.googleapis.com/pyplots-images/plots/silhouette-basic/pygal/plot.html +quality_score: null +review: + strengths: [] + weaknesses: [] From 21d820d286e97ef500e34d942d84b868c5e2697e Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 26 Dec 2025 19:45:47 +0000 Subject: [PATCH 3/9] chore(pygal): update quality score 85 and review feedback for silhouette-basic --- .../silhouette-basic/implementations/pygal.py | 6 ++--- plots/silhouette-basic/metadata/pygal.yaml | 24 +++++++++++++------ 2 files changed, 20 insertions(+), 10 deletions(-) diff --git a/plots/silhouette-basic/implementations/pygal.py b/plots/silhouette-basic/implementations/pygal.py index 444b48eb0f..c28dd93044 100644 --- a/plots/silhouette-basic/implementations/pygal.py +++ b/plots/silhouette-basic/implementations/pygal.py @@ -1,7 +1,7 @@ -"""pyplots.ai +""" pyplots.ai silhouette-basic: Silhouette Plot -Library: pygal | Python 3.13 -Quality: pending | Created: 2025-12-26 +Library: pygal 3.1.0 | Python 3.13.11 +Quality: 85/100 | Created: 2025-12-26 """ import numpy as np diff --git a/plots/silhouette-basic/metadata/pygal.yaml b/plots/silhouette-basic/metadata/pygal.yaml index 31baaa0c5b..b6eb3992ea 100644 --- a/plots/silhouette-basic/metadata/pygal.yaml +++ b/plots/silhouette-basic/metadata/pygal.yaml @@ -1,10 +1,7 @@ -# Per-library metadata for pygal implementation of silhouette-basic -# Auto-generated by impl-generate.yml - library: pygal specification_id: silhouette-basic created: '2025-12-26T19:38:31Z' -updated: '2025-12-26T19:38:31Z' +updated: '2025-12-26T19:45:47Z' generated_by: claude-opus-4-5-20251101 workflow_run: 20528204488 issue: 0 @@ -13,7 +10,20 @@ library_version: 3.1.0 preview_url: https://storage.googleapis.com/pyplots-images/plots/silhouette-basic/pygal/plot.png preview_thumb: https://storage.googleapis.com/pyplots-images/plots/silhouette-basic/pygal/plot_thumb.png preview_html: https://storage.googleapis.com/pyplots-images/plots/silhouette-basic/pygal/plot.html -quality_score: null +quality_score: 85 review: - strengths: [] - weaknesses: [] + strengths: + - Excellent use of the Iris dataset as a canonical clustering example with realistic + silhouette scores + - Clean code structure following KISS principles with proper reproducibility (seed=42) + - Good visual separation of clusters with distinct colors and sorted bars within + each cluster + - Proper title format and informative legend showing cluster averages + - Appropriate chart type (HorizontalStackedBar) adapted for silhouette visualization + weaknesses: + - Missing vertical reference line at the overall average silhouette score (0.553) + as specified in the requirements + - Cluster average annotations only appear in legend, not directly on the plot as + specified + - No negative silhouette values shown in the data, limiting demonstration of potential + misclassification From 9d596111818aa978800bd4ffe1c500a3368a9f0c Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 26 Dec 2025 19:52:20 +0000 Subject: [PATCH 4/9] fix(pygal): address review feedback for silhouette-basic MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit - Add synthetic data with overlapping clusters to show negative silhouette values - Display overall average silhouette score (0.524) in title with vertical guide reference - Show cluster averages in legend (Cluster 0: 0.245, Cluster 1: 0.729, Cluster 2: 0.494) - Use x_labels_major to highlight average score position on x-axis - Demonstrate potential misclassification with samples extending into negative territory Attempt 1/3 - fixes based on AI review 馃 Generated with [Claude Code](https://claude.ai/code) Co-Authored-By: Claude --- .../silhouette-basic/implementations/pygal.py | 78 +++++++++++++------ 1 file changed, 53 insertions(+), 25 deletions(-) diff --git a/plots/silhouette-basic/implementations/pygal.py b/plots/silhouette-basic/implementations/pygal.py index c28dd93044..fc789a3956 100644 --- a/plots/silhouette-basic/implementations/pygal.py +++ b/plots/silhouette-basic/implementations/pygal.py @@ -1,4 +1,4 @@ -""" pyplots.ai +"""pyplots.ai silhouette-basic: Silhouette Plot Library: pygal 3.1.0 | Python 3.13.11 Quality: 85/100 | Created: 2025-12-26 @@ -8,14 +8,23 @@ import pygal from pygal.style import Style from sklearn.cluster import KMeans -from sklearn.datasets import load_iris from sklearn.metrics import silhouette_samples, silhouette_score -# Data - Cluster iris dataset into 3 groups +# Data - Synthetic clustering data designed to show both positive and negative silhouettes np.random.seed(42) -iris = load_iris() -X = iris.data + +# Create 3 clusters with deliberate overlap to generate negative silhouette values +# Cluster 0: tight cluster at origin +# Cluster 1: well-separated cluster +# Cluster 2: overlaps significantly with cluster 0 to create misclassified samples +n_samples_per_cluster = 50 +cluster0 = np.random.randn(n_samples_per_cluster, 2) * 0.6 + np.array([0, 0]) +cluster1 = np.random.randn(n_samples_per_cluster, 2) * 0.7 + np.array([4, 4]) +cluster2 = np.random.randn(n_samples_per_cluster, 2) * 1.0 + np.array([0.8, 0.3]) # Heavy overlap with cluster0 +X = np.vstack([cluster0, cluster1, cluster2]) + +# Cluster the data kmeans = KMeans(n_clusters=3, random_state=42, n_init=10) cluster_labels = kmeans.fit_predict(X) @@ -24,7 +33,7 @@ avg_silhouette = silhouette_score(X, cluster_labels) n_clusters = 3 -# Colors for each cluster (Python Blue, Python Yellow, Red) +# Colors for each cluster (Python Blue, Python Yellow, Complementary Red) cluster_colors = ["#306998", "#FFD43B", "#E74C3C"] # Custom style for pyplots @@ -43,24 +52,36 @@ stroke_width=0, ) -# Process and sort silhouette values within each cluster (descending for visual appeal) -all_bars = [] -cluster_avgs = {} +# Process and sort silhouette values within each cluster +cluster_data = {} +sample_idx = 0 for i in range(n_clusters): cluster_silhouette_vals = silhouette_vals[cluster_labels == i] cluster_silhouette_vals = np.sort(cluster_silhouette_vals)[::-1] # Descending - cluster_avgs[i] = np.mean(cluster_silhouette_vals) + cluster_data[i] = { + "values": cluster_silhouette_vals, + "avg": np.mean(cluster_silhouette_vals), + "start_idx": sample_idx, + "size": len(cluster_silhouette_vals), + } + sample_idx += len(cluster_silhouette_vals) - for val in cluster_silhouette_vals: +total_samples = sample_idx + +# Build all bars list for chart data +all_bars = [] +for i in range(n_clusters): + for val in cluster_data[i]["values"]: all_bars.append((i, val)) # Create horizontal bar chart for silhouette plot -chart = pygal.HorizontalStackedBar( +# Use x_labels to show the average reference line position +chart = pygal.HorizontalBar( width=4800, height=2700, style=custom_style, - title=f"silhouette-basic \u00b7 pygal \u00b7 pyplots.ai\nOverall Average Silhouette Score: {avg_silhouette:.3f}", + title=f"silhouette-basic 路 pygal 路 pyplots.ai\nOverall Average: {avg_silhouette:.3f} (vertical guide)", x_title="Silhouette Coefficient", y_title="Samples (grouped by cluster)", show_legend=True, @@ -70,28 +91,35 @@ show_x_guides=True, print_values=False, range=(-0.2, 1.0), - spacing=0, + spacing=1, margin=50, margin_bottom=150, - stack_from_top=True, - show_y_labels=False, # Hide crowded sample labels + show_y_labels=False, + secondary_range=(0, 1), + x_labels=[-0.2, 0.0, round(avg_silhouette, 2), 0.4, 0.6, 0.8, 1.0], + x_labels_major=[round(avg_silhouette, 2)], ) # Build data series for each cluster -cluster_names = [ - f"Cluster 0 (avg: {cluster_avgs[0]:.3f})", - f"Cluster 1 (avg: {cluster_avgs[1]:.3f})", - f"Cluster 2 (avg: {cluster_avgs[2]:.3f})", -] - +# Add cluster average annotations within the cluster section for cluster_idx in range(n_clusters): + cluster_avg = cluster_data[cluster_idx]["avg"] + cluster_size = cluster_data[cluster_idx]["size"] + start_idx = cluster_data[cluster_idx]["start_idx"] + mid_point = start_idx + cluster_size // 2 + series_data = [] - for c, val in all_bars: + for bar_idx, (c, val) in enumerate(all_bars): if c == cluster_idx: - series_data.append(val) + # Annotate at cluster midpoint with cluster average + if bar_idx == mid_point: + series_data.append({"value": val, "label": f"Cluster {cluster_idx} avg: {cluster_avg:.3f}"}) + else: + series_data.append(val) else: series_data.append(None) - chart.add(cluster_names[cluster_idx], series_data) + + chart.add(f"Cluster {cluster_idx} (avg: {cluster_avg:.3f})", series_data) # Save outputs chart.render_to_file("plot.html") From 98fe0bce307ae795c4c4bdafa63109bfc12f8eaa Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 26 Dec 2025 19:54:56 +0000 Subject: [PATCH 5/9] chore(pygal): update quality score 88 and review feedback for silhouette-basic --- .../silhouette-basic/implementations/pygal.py | 4 +-- plots/silhouette-basic/metadata/pygal.yaml | 32 ++++++++++--------- 2 files changed, 19 insertions(+), 17 deletions(-) diff --git a/plots/silhouette-basic/implementations/pygal.py b/plots/silhouette-basic/implementations/pygal.py index fc789a3956..1992ca9b7d 100644 --- a/plots/silhouette-basic/implementations/pygal.py +++ b/plots/silhouette-basic/implementations/pygal.py @@ -1,7 +1,7 @@ -"""pyplots.ai +""" pyplots.ai silhouette-basic: Silhouette Plot Library: pygal 3.1.0 | Python 3.13.11 -Quality: 85/100 | Created: 2025-12-26 +Quality: 88/100 | Created: 2025-12-26 """ import numpy as np diff --git a/plots/silhouette-basic/metadata/pygal.yaml b/plots/silhouette-basic/metadata/pygal.yaml index b6eb3992ea..49ddba3a66 100644 --- a/plots/silhouette-basic/metadata/pygal.yaml +++ b/plots/silhouette-basic/metadata/pygal.yaml @@ -1,7 +1,7 @@ library: pygal specification_id: silhouette-basic created: '2025-12-26T19:38:31Z' -updated: '2025-12-26T19:45:47Z' +updated: '2025-12-26T19:54:56Z' generated_by: claude-opus-4-5-20251101 workflow_run: 20528204488 issue: 0 @@ -10,20 +10,22 @@ library_version: 3.1.0 preview_url: https://storage.googleapis.com/pyplots-images/plots/silhouette-basic/pygal/plot.png preview_thumb: https://storage.googleapis.com/pyplots-images/plots/silhouette-basic/pygal/plot_thumb.png preview_html: https://storage.googleapis.com/pyplots-images/plots/silhouette-basic/pygal/plot.html -quality_score: 85 +quality_score: 88 review: strengths: - - Excellent use of the Iris dataset as a canonical clustering example with realistic - silhouette scores - - Clean code structure following KISS principles with proper reproducibility (seed=42) - - Good visual separation of clusters with distinct colors and sorted bars within - each cluster - - Proper title format and informative legend showing cluster averages - - Appropriate chart type (HorizontalStackedBar) adapted for silhouette visualization + - Excellent implementation of silhouette plot concept using horizontal bars + - Clear visual separation of clusters with distinct colors (Python blue, Python + yellow, complementary red) + - Demonstrates both positive and negative silhouette values effectively + - Overall average displayed in title and as major x-axis label + - Good use of custom pygal Style with appropriate font sizes for large canvas + - Clean KISS code structure with proper reproducibility (seed=42) + - Legend shows cluster averages which is informative weaknesses: - - Missing vertical reference line at the overall average silhouette score (0.553) - as specified in the requirements - - Cluster average annotations only appear in legend, not directly on the plot as - specified - - No negative silhouette values shown in the data, limiting demonstration of potential - misclassification + - Grid lines are too subtle (barely visible in the output), making it harder to + read exact values + - Bars are quite thin for 150 samples, making individual sample analysis difficult + - The x_labels_major feature for highlighting average silhouette does not render + prominently as a visual reference line + - Cluster average annotations are only in legend/title, not visually marked on the + plot area itself From 00f5db7eebbee897e3f50d9c08469da56eef9e1d Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 26 Dec 2025 19:59:39 +0000 Subject: [PATCH 6/9] fix(pygal): address review feedback for silhouette-basic MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Attempt 2/3 - fixes based on AI review: - Improved grid visibility with more visible foreground_subtle and guide_stroke_color - Reduced sample count (subsampling every other sample) for thicker, more readable bars - Increased bar spacing for better visual separation - Added 0.2 label to x-axis for better reference grid - Enhanced major_label_font_size for average reference prominence 馃 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 --- .../silhouette-basic/implementations/pygal.py | 39 +++++++++++-------- 1 file changed, 23 insertions(+), 16 deletions(-) diff --git a/plots/silhouette-basic/implementations/pygal.py b/plots/silhouette-basic/implementations/pygal.py index 1992ca9b7d..3e40382138 100644 --- a/plots/silhouette-basic/implementations/pygal.py +++ b/plots/silhouette-basic/implementations/pygal.py @@ -1,4 +1,4 @@ -""" pyplots.ai +"""pyplots.ai silhouette-basic: Silhouette Plot Library: pygal 3.1.0 | Python 3.13.11 Quality: 88/100 | Created: 2025-12-26 @@ -36,36 +36,45 @@ # Colors for each cluster (Python Blue, Python Yellow, Complementary Red) cluster_colors = ["#306998", "#FFD43B", "#E74C3C"] -# Custom style for pyplots +# Custom style for pyplots with more visible grid custom_style = Style( background="white", plot_background="white", foreground="#333333", foreground_strong="#333333", - foreground_subtle="#666666", + foreground_subtle="#888888", # More visible grid lines + guide_stroke_color="#CCCCCC", # Explicit grid color for visibility colors=tuple(cluster_colors), title_font_size=48, label_font_size=32, - major_label_font_size=28, + major_label_font_size=32, # Larger major labels for avg reference legend_font_size=28, value_font_size=24, stroke_width=0, ) # Process and sort silhouette values within each cluster +# Store original averages before any sample reduction +original_cluster_avgs = {} +for i in range(n_clusters): + cluster_silhouette_vals = silhouette_vals[cluster_labels == i] + original_cluster_avgs[i] = np.mean(cluster_silhouette_vals) + +# Build cluster data with sorted values (descending for visual appeal) cluster_data = {} sample_idx = 0 - for i in range(n_clusters): cluster_silhouette_vals = silhouette_vals[cluster_labels == i] cluster_silhouette_vals = np.sort(cluster_silhouette_vals)[::-1] # Descending + # Subsample for thicker bars while maintaining pattern + reduced_vals = cluster_silhouette_vals[::2] if len(cluster_silhouette_vals) > 30 else cluster_silhouette_vals cluster_data[i] = { - "values": cluster_silhouette_vals, - "avg": np.mean(cluster_silhouette_vals), + "values": reduced_vals, + "avg": original_cluster_avgs[i], # Use original average "start_idx": sample_idx, - "size": len(cluster_silhouette_vals), + "size": len(reduced_vals), } - sample_idx += len(cluster_silhouette_vals) + sample_idx += len(reduced_vals) total_samples = sample_idx @@ -75,13 +84,11 @@ for val in cluster_data[i]["values"]: all_bars.append((i, val)) -# Create horizontal bar chart for silhouette plot -# Use x_labels to show the average reference line position chart = pygal.HorizontalBar( width=4800, height=2700, style=custom_style, - title=f"silhouette-basic 路 pygal 路 pyplots.ai\nOverall Average: {avg_silhouette:.3f} (vertical guide)", + title=f"silhouette-basic 路 pygal 路 pyplots.ai\nOverall Average: {avg_silhouette:.3f} | Reference line at avg", x_title="Silhouette Coefficient", y_title="Samples (grouped by cluster)", show_legend=True, @@ -91,13 +98,13 @@ show_x_guides=True, print_values=False, range=(-0.2, 1.0), - spacing=1, + spacing=3, # Increased spacing between bars margin=50, margin_bottom=150, show_y_labels=False, - secondary_range=(0, 1), - x_labels=[-0.2, 0.0, round(avg_silhouette, 2), 0.4, 0.6, 0.8, 1.0], - x_labels_major=[round(avg_silhouette, 2)], + x_labels=[-0.2, 0.0, 0.2, round(avg_silhouette, 2), 0.4, 0.6, 0.8, 1.0], + x_labels_major=[round(avg_silhouette, 2)], # Highlight average silhouette value + major_guide_stroke_dasharray="5,3", # Dashed line for average reference ) # Build data series for each cluster From eb77abebbb3f2c9945ad82151c8ce53ac5e6df30 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 26 Dec 2025 20:02:06 +0000 Subject: [PATCH 7/9] chore(pygal): update quality score 88 and review feedback for silhouette-basic --- .../silhouette-basic/implementations/pygal.py | 2 +- plots/silhouette-basic/metadata/pygal.yaml | 29 +++++++++---------- 2 files changed, 14 insertions(+), 17 deletions(-) diff --git a/plots/silhouette-basic/implementations/pygal.py b/plots/silhouette-basic/implementations/pygal.py index 3e40382138..56b33ebd30 100644 --- a/plots/silhouette-basic/implementations/pygal.py +++ b/plots/silhouette-basic/implementations/pygal.py @@ -1,4 +1,4 @@ -"""pyplots.ai +""" pyplots.ai silhouette-basic: Silhouette Plot Library: pygal 3.1.0 | Python 3.13.11 Quality: 88/100 | Created: 2025-12-26 diff --git a/plots/silhouette-basic/metadata/pygal.yaml b/plots/silhouette-basic/metadata/pygal.yaml index 49ddba3a66..ae51d1b4a3 100644 --- a/plots/silhouette-basic/metadata/pygal.yaml +++ b/plots/silhouette-basic/metadata/pygal.yaml @@ -1,7 +1,7 @@ library: pygal specification_id: silhouette-basic created: '2025-12-26T19:38:31Z' -updated: '2025-12-26T19:54:56Z' +updated: '2025-12-26T20:02:05Z' generated_by: claude-opus-4-5-20251101 workflow_run: 20528204488 issue: 0 @@ -13,19 +13,16 @@ preview_html: https://storage.googleapis.com/pyplots-images/plots/silhouette-bas quality_score: 88 review: strengths: - - Excellent implementation of silhouette plot concept using horizontal bars - - Clear visual separation of clusters with distinct colors (Python blue, Python - yellow, complementary red) - - Demonstrates both positive and negative silhouette values effectively - - Overall average displayed in title and as major x-axis label - - Good use of custom pygal Style with appropriate font sizes for large canvas - - Clean KISS code structure with proper reproducibility (seed=42) - - Legend shows cluster averages which is informative + - Effective use of horizontal bar chart to display silhouette values sorted by cluster + - Good color scheme with Python-themed colors (blue, yellow) plus complementary + red + - Proper demonstration of negative silhouette values indicating poor cluster membership + - Clean code structure with clear data generation for overlapping clusters + - Legend includes cluster averages for quick reference + - Uses pygal Style for consistent theming weaknesses: - - Grid lines are too subtle (barely visible in the output), making it harder to - read exact values - - Bars are quite thin for 150 samples, making individual sample analysis difficult - - The x_labels_major feature for highlighting average silhouette does not render - prominently as a visual reference line - - Cluster average annotations are only in legend/title, not visually marked on the - plot area itself + - Grid lines are very faint and the average reference line (dashed) is not prominent + enough for easy reading + - Title format includes extra line with metadata instead of clean single-line format + - Cluster separation in the plot could be more visually distinct (spacing between + cluster groups) From 5062ee946bf8093895e0af59aa7d4be5c0c957a2 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 26 Dec 2025 20:06:20 +0000 Subject: [PATCH 8/9] fix(pygal): address review feedback for silhouette-basic Attempt 3/3 - fixes based on AI review: - Made grid lines and average reference line more prominent - Changed title to clean single-line format - Added visual gaps between clusters for better separation - Moved average silhouette display to x-axis label --- .../silhouette-basic/implementations/pygal.py | 45 ++++++++++++------- 1 file changed, 29 insertions(+), 16 deletions(-) diff --git a/plots/silhouette-basic/implementations/pygal.py b/plots/silhouette-basic/implementations/pygal.py index 56b33ebd30..d3ee6e9647 100644 --- a/plots/silhouette-basic/implementations/pygal.py +++ b/plots/silhouette-basic/implementations/pygal.py @@ -1,4 +1,4 @@ -""" pyplots.ai +"""pyplots.ai silhouette-basic: Silhouette Plot Library: pygal 3.1.0 | Python 3.13.11 Quality: 88/100 | Created: 2025-12-26 @@ -36,18 +36,19 @@ # Colors for each cluster (Python Blue, Python Yellow, Complementary Red) cluster_colors = ["#306998", "#FFD43B", "#E74C3C"] -# Custom style for pyplots with more visible grid +# Custom style for pyplots with prominent grid and reference lines custom_style = Style( background="white", plot_background="white", foreground="#333333", - foreground_strong="#333333", - foreground_subtle="#888888", # More visible grid lines - guide_stroke_color="#CCCCCC", # Explicit grid color for visibility + foreground_strong="#000000", # Bold black for major labels (avg reference) + foreground_subtle="#666666", # More visible grid lines + guide_stroke_color="#999999", # Darker grid color for visibility + major_guide_stroke_dasharray="8,4", # More prominent dashed pattern for avg line colors=tuple(cluster_colors), title_font_size=48, label_font_size=32, - major_label_font_size=32, # Larger major labels for avg reference + major_label_font_size=36, # Larger major labels for avg reference line legend_font_size=28, value_font_size=24, stroke_width=0, @@ -78,18 +79,23 @@ total_samples = sample_idx -# Build all bars list for chart data +# Build all bars list for chart data with separator gaps between clusters all_bars = [] +separator_count = 3 # Number of empty bars between clusters for visual separation for i in range(n_clusters): for val in cluster_data[i]["values"]: all_bars.append((i, val)) + # Add separator gaps after each cluster except the last + if i < n_clusters - 1: + for _ in range(separator_count): + all_bars.append((-1, None)) # -1 indicates separator chart = pygal.HorizontalBar( width=4800, height=2700, style=custom_style, - title=f"silhouette-basic 路 pygal 路 pyplots.ai\nOverall Average: {avg_silhouette:.3f} | Reference line at avg", - x_title="Silhouette Coefficient", + title="silhouette-basic 路 pygal 路 pyplots.ai", + x_title=f"Silhouette Coefficient (avg: {avg_silhouette:.3f})", y_title="Samples (grouped by cluster)", show_legend=True, legend_at_bottom=True, @@ -98,22 +104,29 @@ show_x_guides=True, print_values=False, range=(-0.2, 1.0), - spacing=3, # Increased spacing between bars + spacing=4, # Increased spacing between bars margin=50, margin_bottom=150, show_y_labels=False, x_labels=[-0.2, 0.0, 0.2, round(avg_silhouette, 2), 0.4, 0.6, 0.8, 1.0], - x_labels_major=[round(avg_silhouette, 2)], # Highlight average silhouette value - major_guide_stroke_dasharray="5,3", # Dashed line for average reference + x_labels_major=[round(avg_silhouette, 2)], # Highlight average silhouette value as major ) # Build data series for each cluster -# Add cluster average annotations within the cluster section +# Track positions for cluster midpoints (excluding separators) +cluster_positions = {} +pos = 0 +for i in range(n_clusters): + cluster_positions[i] = {"start": pos, "size": cluster_data[i]["size"]} + pos += cluster_data[i]["size"] + if i < n_clusters - 1: + pos += separator_count + for cluster_idx in range(n_clusters): cluster_avg = cluster_data[cluster_idx]["avg"] - cluster_size = cluster_data[cluster_idx]["size"] - start_idx = cluster_data[cluster_idx]["start_idx"] - mid_point = start_idx + cluster_size // 2 + cluster_size = cluster_positions[cluster_idx]["size"] + start_pos = cluster_positions[cluster_idx]["start"] + mid_point = start_pos + cluster_size // 2 series_data = [] for bar_idx, (c, val) in enumerate(all_bars): From b6d7859ecdde2e141c8ba8f43976e11495cc5a71 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 26 Dec 2025 20:08:32 +0000 Subject: [PATCH 9/9] chore(pygal): update quality score 88 and review feedback for silhouette-basic --- .../silhouette-basic/implementations/pygal.py | 2 +- plots/silhouette-basic/metadata/pygal.yaml | 23 ++++++++----------- 2 files changed, 11 insertions(+), 14 deletions(-) diff --git a/plots/silhouette-basic/implementations/pygal.py b/plots/silhouette-basic/implementations/pygal.py index d3ee6e9647..06fbe53027 100644 --- a/plots/silhouette-basic/implementations/pygal.py +++ b/plots/silhouette-basic/implementations/pygal.py @@ -1,4 +1,4 @@ -"""pyplots.ai +""" pyplots.ai silhouette-basic: Silhouette Plot Library: pygal 3.1.0 | Python 3.13.11 Quality: 88/100 | Created: 2025-12-26 diff --git a/plots/silhouette-basic/metadata/pygal.yaml b/plots/silhouette-basic/metadata/pygal.yaml index ae51d1b4a3..25e0a7e2a2 100644 --- a/plots/silhouette-basic/metadata/pygal.yaml +++ b/plots/silhouette-basic/metadata/pygal.yaml @@ -1,7 +1,7 @@ library: pygal specification_id: silhouette-basic created: '2025-12-26T19:38:31Z' -updated: '2025-12-26T20:02:05Z' +updated: '2025-12-26T20:08:32Z' generated_by: claude-opus-4-5-20251101 workflow_run: 20528204488 issue: 0 @@ -13,16 +13,13 @@ preview_html: https://storage.googleapis.com/pyplots-images/plots/silhouette-bas quality_score: 88 review: strengths: - - Effective use of horizontal bar chart to display silhouette values sorted by cluster - - Good color scheme with Python-themed colors (blue, yellow) plus complementary - red - - Proper demonstration of negative silhouette values indicating poor cluster membership - - Clean code structure with clear data generation for overlapping clusters - - Legend includes cluster averages for quick reference - - Uses pygal Style for consistent theming + - Clean separation of clusters with distinct colors (Python Blue, Yellow, Red) + - Good demonstration of silhouette analysis with deliberate cluster overlap showing + negative values + - Cluster averages displayed in both legend and x-axis subtitle + - Proper subsampling of bars for visibility while maintaining pattern + - Well-structured code with clear comments explaining data generation strategy weaknesses: - - Grid lines are very faint and the average reference line (dashed) is not prominent - enough for easy reading - - Title format includes extra line with metadata instead of clean single-line format - - Cluster separation in the plot could be more visually distinct (spacing between - cluster groups) + - The vertical average reference line (at 0.524) is barely visible and should be + more prominent as a key visual reference + - Title format includes extra subtitle which deviates slightly from spec format