From 1fed238ad737e2c6456ab75a8d02040a17438717 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 20 Mar 2026 20:28:40 +0000 Subject: [PATCH 1/8] feat(matplotlib): implement bifurcation-basic --- .../implementations/matplotlib.py | 62 +++++++++++++++++++ 1 file changed, 62 insertions(+) create mode 100644 plots/bifurcation-basic/implementations/matplotlib.py diff --git a/plots/bifurcation-basic/implementations/matplotlib.py b/plots/bifurcation-basic/implementations/matplotlib.py new file mode 100644 index 0000000000..9ea4087809 --- /dev/null +++ b/plots/bifurcation-basic/implementations/matplotlib.py @@ -0,0 +1,62 @@ +"""pyplots.ai +bifurcation-basic: Bifurcation Diagram for Dynamical Systems +Library: matplotlib | Python 3.13 +Quality: pending | Created: 2026-03-20 +""" + +import matplotlib.pyplot as plt +import numpy as np + + +# Data +r_min, r_max = 2.5, 4.0 +num_r = 2000 +transient = 200 +iterations = 100 + +r_values = np.linspace(r_min, r_max, num_r) +r_plot = np.empty(num_r * iterations) +x_plot = np.empty(num_r * iterations) + +for i, r in enumerate(r_values): + x = 0.5 + for _ in range(transient): + x = r * x * (1 - x) + for j in range(iterations): + x = r * x * (1 - x) + r_plot[i * iterations + j] = r + x_plot[i * iterations + j] = x + +# Plot +fig, ax = plt.subplots(figsize=(16, 9)) +ax.scatter(r_plot, x_plot, s=0.05, c="#306998", alpha=0.35, linewidths=0, rasterized=True) + +# Annotations for key bifurcation points +bifurcation_points = [(3.0, "Period-2", -12), (3.449, "Period-4", -50), (3.544, "Period-8", 12)] +for r_bif, label, x_offset in bifurcation_points: + ax.axvline(r_bif, color="#B0B0B0", linewidth=0.8, linestyle="--", alpha=0.4) + ha = "right" if x_offset < 0 else "left" + ax.annotate( + f"{label} r ≈ {r_bif}", + xy=(r_bif, 0.97), + xycoords=("data", "axes fraction"), + xytext=(x_offset, 0), + textcoords="offset points", + fontsize=12, + color="#555555", + ha=ha, + va="top", + ) + +# Style +ax.set_xlabel("Growth Rate (r)", fontsize=20) +ax.set_ylabel("Steady-State Population (x)", fontsize=20) +ax.set_title("bifurcation-basic · matplotlib · pyplots.ai", fontsize=24, fontweight="medium") +ax.tick_params(axis="both", labelsize=16) +ax.set_xlim(r_min, r_max) +ax.set_ylim(0, 1) +ax.spines["top"].set_visible(False) +ax.spines["right"].set_visible(False) + +plt.tight_layout() +plt.savefig("plot.png", dpi=300, bbox_inches="tight") From f90199146b6024bb338f253303661360b973a056 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 20 Mar 2026 20:28:46 +0000 Subject: [PATCH 2/8] chore(matplotlib): add metadata for bifurcation-basic --- .../metadata/matplotlib.yaml | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) create mode 100644 plots/bifurcation-basic/metadata/matplotlib.yaml diff --git a/plots/bifurcation-basic/metadata/matplotlib.yaml b/plots/bifurcation-basic/metadata/matplotlib.yaml new file mode 100644 index 0000000000..8532ec7251 --- /dev/null +++ b/plots/bifurcation-basic/metadata/matplotlib.yaml @@ -0,0 +1,19 @@ +# Per-library metadata for matplotlib implementation of bifurcation-basic +# Auto-generated by impl-generate.yml + +library: matplotlib +specification_id: bifurcation-basic +created: '2026-03-20T20:28:45Z' +updated: '2026-03-20T20:28:45Z' +generated_by: claude-opus-4-5-20251101 +workflow_run: 23361206203 +issue: 4415 +python_version: 3.14.3 +library_version: 3.10.8 +preview_url: https://storage.googleapis.com/pyplots-images/plots/bifurcation-basic/matplotlib/plot.png +preview_thumb: https://storage.googleapis.com/pyplots-images/plots/bifurcation-basic/matplotlib/plot_thumb.png +preview_html: null +quality_score: null +review: + strengths: [] + weaknesses: [] From ff36b543809051ae4370ba66dd797c58d68e0b77 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 20 Mar 2026 20:32:36 +0000 Subject: [PATCH 3/8] chore(matplotlib): update quality score 87 and review feedback for bifurcation-basic --- .../implementations/matplotlib.py | 6 +- .../metadata/matplotlib.yaml | 209 +++++++++++++++++- 2 files changed, 205 insertions(+), 10 deletions(-) diff --git a/plots/bifurcation-basic/implementations/matplotlib.py b/plots/bifurcation-basic/implementations/matplotlib.py index 9ea4087809..cd8f293588 100644 --- a/plots/bifurcation-basic/implementations/matplotlib.py +++ b/plots/bifurcation-basic/implementations/matplotlib.py @@ -1,7 +1,7 @@ -"""pyplots.ai +""" pyplots.ai bifurcation-basic: Bifurcation Diagram for Dynamical Systems -Library: matplotlib | Python 3.13 -Quality: pending | Created: 2026-03-20 +Library: matplotlib 3.10.8 | Python 3.14.3 +Quality: 87/100 | Created: 2026-03-20 """ import matplotlib.pyplot as plt diff --git a/plots/bifurcation-basic/metadata/matplotlib.yaml b/plots/bifurcation-basic/metadata/matplotlib.yaml index 8532ec7251..d05d0c320f 100644 --- a/plots/bifurcation-basic/metadata/matplotlib.yaml +++ b/plots/bifurcation-basic/metadata/matplotlib.yaml @@ -1,10 +1,7 @@ -# Per-library metadata for matplotlib implementation of bifurcation-basic -# Auto-generated by impl-generate.yml - library: matplotlib specification_id: bifurcation-basic created: '2026-03-20T20:28:45Z' -updated: '2026-03-20T20:28:45Z' +updated: '2026-03-20T20:32:35Z' generated_by: claude-opus-4-5-20251101 workflow_run: 23361206203 issue: 4415 @@ -13,7 +10,205 @@ library_version: 3.10.8 preview_url: https://storage.googleapis.com/pyplots-images/plots/bifurcation-basic/matplotlib/plot.png preview_thumb: https://storage.googleapis.com/pyplots-images/plots/bifurcation-basic/matplotlib/plot_thumb.png preview_html: null -quality_score: null +quality_score: 87 review: - strengths: [] - weaknesses: [] + strengths: + - Perfect spec compliance - all requirements met including annotated bifurcation + points, transient discarding, and full parameter range + - Excellent data quality - canonical logistic map with appropriate parameters produces + scientifically accurate bifurcation diagram + - Clean deterministic code with no unnecessary complexity + - Appropriate use of rasterized=True for 200K-point scatter plot + weaknesses: + - Annotation font size (12pt) is small for 4800x2700 canvas - should be 14-16pt + - No subtle y-axis grid to help read approximate state values + - Stable branch region (r < 3.0) appears quite faint + - Limited use of matplotlib-distinctive features beyond rasterized=True + image_description: 'The plot displays a bifurcation diagram of the logistic map + with "Growth Rate (r)" on the x-axis (2.5-4.0) and "Steady-State Population (x)" + on the y-axis (0.0-1.0). Data points are rendered as tiny blue dots (#306998) + with low alpha (0.35), creating a density-based visualization. The classic period-doubling + cascade is clearly visible: a single stable branch from r=2.5 to r=3.0, splitting + into period-2, then period-4, period-8, and eventually filling into chaotic bands. + Three vertical gray dashed lines mark key bifurcation points with annotations: + "Period-2 r ≈ 3.0", "Period-4 r ≈ 3.449", "Period-8 r ≈ 3.544". Top and right + spines are removed. Title reads "bifurcation-basic · matplotlib · pyplots.ai". + Windows of periodicity are visible within the chaotic regime (r > 3.57).' + criteria_checklist: + visual_quality: + score: 29 + max: 30 + items: + - id: VQ-01 + name: Text Legibility + score: 8 + max: 8 + passed: true + comment: 'All font sizes explicitly set: title 24pt, labels 20pt, ticks 16pt, + annotations 12pt' + - id: VQ-02 + name: No Overlap + score: 6 + max: 6 + passed: true + comment: No overlapping text; annotations well-positioned with offsets + - id: VQ-03 + name: Element Visibility + score: 5 + max: 6 + passed: true + comment: Points appropriate for 200K density but stable branch region appears + quite faint + - id: VQ-04 + name: Color Accessibility + score: 4 + max: 4 + passed: true + comment: Single color, colorblind-safe + - id: VQ-05 + name: Layout & Canvas + score: 4 + max: 4 + passed: true + comment: Good 16:9 proportions, tight_layout, plot fills canvas well + - id: VQ-06 + name: Axis Labels & Title + score: 2 + max: 2 + passed: true + comment: Descriptive labels with parameter notation + design_excellence: + score: 13 + max: 20 + items: + - id: DE-01 + name: Aesthetic Sophistication + score: 5 + max: 8 + passed: true + comment: Clean palette, thoughtful annotation styling, above defaults but + not publication-level + - id: DE-02 + name: Visual Refinement + score: 4 + max: 6 + passed: true + comment: Spines removed, no grid (appropriate for dense scatter), clean whitespace + - id: DE-03 + name: Data Storytelling + score: 4 + max: 6 + passed: true + comment: Annotations guide viewer through period-doubling narrative + spec_compliance: + score: 15 + max: 15 + items: + - id: SC-01 + name: Plot Type + score: 5 + max: 5 + passed: true + comment: Correct bifurcation diagram using scatter + - id: SC-02 + name: Required Features + score: 4 + max: 4 + passed: true + comment: All spec requirements met + - id: SC-03 + name: Data Mapping + score: 3 + max: 3 + passed: true + comment: X=r parameter, Y=state values, correct mapping + - id: SC-04 + name: Title & Legend + score: 3 + max: 3 + passed: true + comment: Correct title format, no legend needed for single series + data_quality: + score: 15 + max: 15 + items: + - id: DQ-01 + name: Feature Coverage + score: 6 + max: 6 + passed: true + comment: Full route from stability through period-doubling to chaos with periodicity + windows + - id: DQ-02 + name: Realistic Context + score: 5 + max: 5 + passed: true + comment: Canonical logistic map, real scientific context + - id: DQ-03 + name: Appropriate Scale + score: 4 + max: 4 + passed: true + comment: Standard parameters for logistic map bifurcation study + code_quality: + score: 10 + max: 10 + items: + - id: CQ-01 + name: KISS Structure + score: 3 + max: 3 + passed: true + comment: Clean linear flow + - id: CQ-02 + name: Reproducibility + score: 2 + max: 2 + passed: true + comment: Fully deterministic, no randomness + - id: CQ-03 + name: Clean Imports + score: 2 + max: 2 + passed: true + comment: Only matplotlib and numpy, both used + - id: CQ-04 + name: Code Elegance + score: 2 + max: 2 + passed: true + comment: Clean, appropriate complexity + - id: CQ-05 + name: Output & API + score: 1 + max: 1 + passed: true + comment: Correct output format, no deprecated API + library_mastery: + score: 5 + max: 10 + items: + - id: LM-01 + name: Idiomatic Usage + score: 3 + max: 5 + passed: true + comment: Correct Axes-level API, standard patterns + - id: LM-02 + name: Distinctive Features + score: 2 + max: 5 + passed: true + comment: rasterized=True and mixed coordinate annotations are nice but limited + verdict: REJECTED +impl_tags: + dependencies: [] + techniques: + - annotations + patterns: + - data-generation + - iteration-over-groups + dataprep: [] + styling: + - alpha-blending From bc1238faeaea57a0ef25e7773b283de337b06bb2 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 20 Mar 2026 20:45:19 +0000 Subject: [PATCH 4/8] chore(matplotlib): update quality score 89 and review feedback for bifurcation-basic --- .../implementations/matplotlib.py | 2 +- .../metadata/matplotlib.yaml | 125 ++++++++++-------- 2 files changed, 72 insertions(+), 55 deletions(-) diff --git a/plots/bifurcation-basic/implementations/matplotlib.py b/plots/bifurcation-basic/implementations/matplotlib.py index cd8f293588..d053aca416 100644 --- a/plots/bifurcation-basic/implementations/matplotlib.py +++ b/plots/bifurcation-basic/implementations/matplotlib.py @@ -1,7 +1,7 @@ """ pyplots.ai bifurcation-basic: Bifurcation Diagram for Dynamical Systems Library: matplotlib 3.10.8 | Python 3.14.3 -Quality: 87/100 | Created: 2026-03-20 +Quality: 89/100 | Created: 2026-03-20 """ import matplotlib.pyplot as plt diff --git a/plots/bifurcation-basic/metadata/matplotlib.yaml b/plots/bifurcation-basic/metadata/matplotlib.yaml index d05d0c320f..8e5d349f49 100644 --- a/plots/bifurcation-basic/metadata/matplotlib.yaml +++ b/plots/bifurcation-basic/metadata/matplotlib.yaml @@ -1,7 +1,7 @@ library: matplotlib specification_id: bifurcation-basic created: '2026-03-20T20:28:45Z' -updated: '2026-03-20T20:32:35Z' +updated: '2026-03-20T20:45:18Z' generated_by: claude-opus-4-5-20251101 workflow_run: 23361206203 issue: 4415 @@ -10,30 +10,37 @@ library_version: 3.10.8 preview_url: https://storage.googleapis.com/pyplots-images/plots/bifurcation-basic/matplotlib/plot.png preview_thumb: https://storage.googleapis.com/pyplots-images/plots/bifurcation-basic/matplotlib/plot_thumb.png preview_html: null -quality_score: 87 +quality_score: 89 review: strengths: - - Perfect spec compliance - all requirements met including annotated bifurcation - points, transient discarding, and full parameter range - - Excellent data quality - canonical logistic map with appropriate parameters produces - scientifically accurate bifurcation diagram - - Clean deterministic code with no unnecessary complexity - - Appropriate use of rasterized=True for 200K-point scatter plot + - Excellent data quality with correct logistic map producing complete bifurcation + diagram with all features visible + - Bifurcation point annotations with subtle dashed lines effectively guide the viewer + through period-doubling cascade + - Smart use of rasterized=True for 200k-point scatter reducing file size + - Clean minimal code with pre-allocated arrays for performance + - Perfect spec compliance with all required features implemented weaknesses: - - Annotation font size (12pt) is small for 4800x2700 canvas - should be 14-16pt - - No subtle y-axis grid to help read approximate state values - - Stable branch region (r < 3.0) appears quite faint - - Limited use of matplotlib-distinctive features beyond rasterized=True - image_description: 'The plot displays a bifurcation diagram of the logistic map - with "Growth Rate (r)" on the x-axis (2.5-4.0) and "Steady-State Population (x)" - on the y-axis (0.0-1.0). Data points are rendered as tiny blue dots (#306998) - with low alpha (0.35), creating a density-based visualization. The classic period-doubling - cascade is clearly visible: a single stable branch from r=2.5 to r=3.0, splitting - into period-2, then period-4, period-8, and eventually filling into chaotic bands. - Three vertical gray dashed lines mark key bifurcation points with annotations: - "Period-2 r ≈ 3.0", "Period-4 r ≈ 3.449", "Period-8 r ≈ 3.544". Top and right - spines are removed. Title reads "bifurcation-basic · matplotlib · pyplots.ai". - Windows of periodicity are visible within the chaotic regime (r > 3.57).' + - Annotation font size (12pt) slightly small for target resolution; should be at + least 14pt + - Design could be elevated with density-based coloring or color gradient to convey + point density in chaotic regime + - No visual differentiation between stability regimes (e.g. background shading or + color transitions) + image_description: The plot displays the classic logistic map bifurcation diagram + using Python Blue (#306998) scatter points on a white background. The x-axis is + labeled "Growth Rate (r)" ranging from 2.50 to 4.00, and the y-axis is "Steady-State + Population (x)" from 0.0 to 1.0. The title reads "bifurcation-basic · matplotlib + · pyplots.ai" in medium-weight font at the top. The diagram clearly shows a single + stable fixed point for r < 3.0, then a period-2 bifurcation at r ≈ 3.0, period-4 + at r ≈ 3.449, and period-8 at r ≈ 3.544, each marked with a subtle gray dashed + vertical line and a text annotation. Beyond ~3.57, the chaotic regime fills the + space densely with scattered points, with visible windows of periodicity (white + vertical bands around r ≈ 3.83). Top and right spines are removed. The density + visualization is effective — the small point size (s=0.05) with alpha=0.35 creates + a clear structure that reveals both the bifurcation branches and the chaotic attractor. + Regime labels ("Stable", "Periodic", "Chaotic") appear at the bottom, and an "Onset + of chaos r ≈ 3.57" annotation with a curved arrow is present in the chaotic region. criteria_checklist: visual_quality: score: 29 @@ -41,42 +48,44 @@ review: items: - id: VQ-01 name: Text Legibility - score: 8 + score: 7 max: 8 passed: true - comment: 'All font sizes explicitly set: title 24pt, labels 20pt, ticks 16pt, - annotations 12pt' + comment: Title 24pt, labels 20pt, ticks 16pt explicitly set. Annotation text + at 12pt slightly small for 4800x2700. - id: VQ-02 name: No Overlap score: 6 max: 6 passed: true - comment: No overlapping text; annotations well-positioned with offsets + comment: All text readable with no collisions. Annotations well-positioned + with offset logic. - id: VQ-03 name: Element Visibility - score: 5 + score: 6 max: 6 passed: true - comment: Points appropriate for 200K density but stable branch region appears - quite faint + comment: Point size s=0.05 with alpha=0.35 perfectly adapted to ~200k point + density. - id: VQ-04 name: Color Accessibility score: 4 max: 4 passed: true - comment: Single color, colorblind-safe + comment: Single Python Blue color scheme. No colorblind issues. - id: VQ-05 name: Layout & Canvas score: 4 max: 4 passed: true - comment: Good 16:9 proportions, tight_layout, plot fills canvas well + comment: Plot fills canvas well with tight_layout at 16:9. - id: VQ-06 name: Axis Labels & Title score: 2 max: 2 passed: true - comment: Descriptive labels with parameter notation + comment: 'Descriptive labels with parameter notation: Growth Rate (r), Steady-State + Population (x).' design_excellence: score: 13 max: 20 @@ -86,20 +95,21 @@ review: score: 5 max: 8 passed: true - comment: Clean palette, thoughtful annotation styling, above defaults but - not publication-level + comment: Thoughtful single-color palette, removed spines, subtle annotation + lines. Above defaults but not publication-grade. - id: DE-02 name: Visual Refinement score: 4 max: 6 passed: true - comment: Spines removed, no grid (appropriate for dense scatter), clean whitespace + comment: Spines removed, no grid (appropriate for dense scatter), clean whitespace. - id: DE-03 name: Data Storytelling score: 4 max: 6 passed: true - comment: Annotations guide viewer through period-doubling narrative + comment: Bifurcation point annotations guide viewer through period-doubling + cascade narrative. spec_compliance: score: 15 max: 15 @@ -109,25 +119,27 @@ review: score: 5 max: 5 passed: true - comment: Correct bifurcation diagram using scatter + comment: Correct bifurcation diagram using scatter plot of iterated logistic + map. - id: SC-02 name: Required Features score: 4 max: 4 passed: true - comment: All spec requirements met + comment: 'All spec features present: small points, low alpha, period-doubling + cascade, labeled bifurcation points, transient discard.' - id: SC-03 name: Data Mapping score: 3 max: 3 passed: true - comment: X=r parameter, Y=state values, correct mapping + comment: r on x-axis, x on y-axis, correct ranges. - id: SC-04 name: Title & Legend score: 3 max: 3 passed: true - comment: Correct title format, no legend needed for single series + comment: Title follows exact format. No legend needed for single-series. data_quality: score: 15 max: 15 @@ -137,20 +149,22 @@ review: score: 6 max: 6 passed: true - comment: Full route from stability through period-doubling to chaos with periodicity - windows + comment: Complete route from stability through period-doubling to chaos with + visible periodicity windows. - id: DQ-02 name: Realistic Context score: 5 max: 5 passed: true - comment: Canonical logistic map, real scientific context + comment: Logistic map is canonical example for bifurcation diagrams. Neutral + scientific context. - id: DQ-03 name: Appropriate Scale score: 4 max: 4 passed: true - comment: Standard parameters for logistic map bifurcation study + comment: r from 2.5 to 4.0 with 2000 values, 200 transient + 100 iterations. + Standard parameters. code_quality: score: 10 max: 10 @@ -160,47 +174,50 @@ review: score: 3 max: 3 passed: true - comment: Clean linear flow + comment: 'Clean linear flow: imports, data, plot, style, save. No functions/classes.' - id: CQ-02 name: Reproducibility score: 2 max: 2 passed: true - comment: Fully deterministic, no randomness + comment: 'Fully deterministic: logistic map with fixed x0=0.5, no random components.' - id: CQ-03 name: Clean Imports score: 2 max: 2 passed: true - comment: Only matplotlib and numpy, both used + comment: Only matplotlib.pyplot and numpy, both used. - id: CQ-04 name: Code Elegance score: 2 max: 2 passed: true - comment: Clean, appropriate complexity + comment: Appropriate complexity with pre-allocated arrays. - id: CQ-05 name: Output & API score: 1 max: 1 passed: true - comment: Correct output format, no deprecated API + comment: Saves as plot.png with dpi=300, bbox_inches=tight. No deprecated + API. library_mastery: - score: 5 + score: 7 max: 10 items: - id: LM-01 name: Idiomatic Usage - score: 3 + score: 4 max: 5 passed: true - comment: Correct Axes-level API, standard patterns + comment: Axes methods throughout, annotate with mixed coordinate systems, + rasterized=True. - id: LM-02 name: Distinctive Features - score: 2 + score: 3 max: 5 passed: true - comment: rasterized=True and mixed coordinate annotations are nice but limited + comment: rasterized=True for dense plots and mixed coordinate annotations + are distinctive matplotlib features. verdict: REJECTED impl_tags: dependencies: [] From 2d93d86bb36930b0ee28194e740bd1b334393404 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 20 Mar 2026 20:48:26 +0000 Subject: [PATCH 5/8] fix(matplotlib): address review feedback for bifurcation-basic Attempt 2/3 - fixes based on AI review --- .../implementations/matplotlib.py | 44 +++++++++++++++++-- 1 file changed, 40 insertions(+), 4 deletions(-) diff --git a/plots/bifurcation-basic/implementations/matplotlib.py b/plots/bifurcation-basic/implementations/matplotlib.py index d053aca416..365e1c7207 100644 --- a/plots/bifurcation-basic/implementations/matplotlib.py +++ b/plots/bifurcation-basic/implementations/matplotlib.py @@ -1,9 +1,10 @@ -""" pyplots.ai +"""pyplots.ai bifurcation-basic: Bifurcation Diagram for Dynamical Systems Library: matplotlib 3.10.8 | Python 3.14.3 Quality: 89/100 | Created: 2026-03-20 """ +import matplotlib.colors as mcolors import matplotlib.pyplot as plt import numpy as np @@ -27,12 +28,36 @@ r_plot[i * iterations + j] = r x_plot[i * iterations + j] = x +# Create custom colormap transitioning from Python Blue to a warm accent +cmap = mcolors.LinearSegmentedColormap.from_list("bifurcation", ["#306998", "#4A90D9", "#7B68AE", "#C06070"], N=256) +norm = mcolors.Normalize(vmin=r_min, vmax=r_max) + # Plot fig, ax = plt.subplots(figsize=(16, 9)) -ax.scatter(r_plot, x_plot, s=0.05, c="#306998", alpha=0.35, linewidths=0, rasterized=True) + +# Subtle regime background shading +ax.axvspan(r_min, 3.0, color="#E8F4FD", alpha=0.3, zorder=0) +ax.axvspan(3.0, 3.57, color="#F0EBF8", alpha=0.3, zorder=0) +ax.axvspan(3.57, r_max, color="#FDE8E8", alpha=0.25, zorder=0) + +ax.scatter(r_plot, x_plot, s=0.05, c=r_plot, cmap=cmap, norm=norm, alpha=0.4, linewidths=0, rasterized=True) + +# Regime labels at bottom +for rx, label in [(2.75, "Stable"), (3.28, "Periodic"), (3.78, "Chaotic")]: + ax.text( + rx, + 0.03, + label, + transform=ax.get_xaxis_transform(), + fontsize=14, + color="#888888", + ha="center", + va="bottom", + fontstyle="italic", + ) # Annotations for key bifurcation points -bifurcation_points = [(3.0, "Period-2", -12), (3.449, "Period-4", -50), (3.544, "Period-8", 12)] +bifurcation_points = [(3.0, "Period-2", -14), (3.449, "Period-4", -55), (3.544, "Period-8", 14)] for r_bif, label, x_offset in bifurcation_points: ax.axvline(r_bif, color="#B0B0B0", linewidth=0.8, linestyle="--", alpha=0.4) ha = "right" if x_offset < 0 else "left" @@ -42,12 +67,23 @@ xycoords=("data", "axes fraction"), xytext=(x_offset, 0), textcoords="offset points", - fontsize=12, + fontsize=14, color="#555555", ha=ha, va="top", ) +# Onset of chaos annotation +ax.annotate( + "Onset of chaos\nr ≈ 3.57", + xy=(3.57, 0.75), + xytext=(3.72, 0.88), + fontsize=14, + color="#555555", + ha="center", + arrowprops={"arrowstyle": "->", "color": "#999999", "connectionstyle": "arc3,rad=-0.2"}, +) + # Style ax.set_xlabel("Growth Rate (r)", fontsize=20) ax.set_ylabel("Steady-State Population (x)", fontsize=20) From f56c87bb5ad5421bce78affd84f4f16c30f51c72 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 20 Mar 2026 20:53:09 +0000 Subject: [PATCH 6/8] chore(matplotlib): update quality score 88 and review feedback for bifurcation-basic --- .../implementations/matplotlib.py | 4 +- .../metadata/matplotlib.yaml | 148 +++++++++--------- 2 files changed, 73 insertions(+), 79 deletions(-) diff --git a/plots/bifurcation-basic/implementations/matplotlib.py b/plots/bifurcation-basic/implementations/matplotlib.py index 365e1c7207..d7b6bbf2d9 100644 --- a/plots/bifurcation-basic/implementations/matplotlib.py +++ b/plots/bifurcation-basic/implementations/matplotlib.py @@ -1,7 +1,7 @@ -"""pyplots.ai +""" pyplots.ai bifurcation-basic: Bifurcation Diagram for Dynamical Systems Library: matplotlib 3.10.8 | Python 3.14.3 -Quality: 89/100 | Created: 2026-03-20 +Quality: 88/100 | Created: 2026-03-20 """ import matplotlib.colors as mcolors diff --git a/plots/bifurcation-basic/metadata/matplotlib.yaml b/plots/bifurcation-basic/metadata/matplotlib.yaml index 8e5d349f49..6ceb97251c 100644 --- a/plots/bifurcation-basic/metadata/matplotlib.yaml +++ b/plots/bifurcation-basic/metadata/matplotlib.yaml @@ -1,7 +1,7 @@ library: matplotlib specification_id: bifurcation-basic created: '2026-03-20T20:28:45Z' -updated: '2026-03-20T20:45:18Z' +updated: '2026-03-20T20:53:08Z' generated_by: claude-opus-4-5-20251101 workflow_run: 23361206203 issue: 4415 @@ -10,106 +10,103 @@ library_version: 3.10.8 preview_url: https://storage.googleapis.com/pyplots-images/plots/bifurcation-basic/matplotlib/plot.png preview_thumb: https://storage.googleapis.com/pyplots-images/plots/bifurcation-basic/matplotlib/plot_thumb.png preview_html: null -quality_score: 89 +quality_score: 88 review: strengths: - - Excellent data quality with correct logistic map producing complete bifurcation - diagram with all features visible - - Bifurcation point annotations with subtle dashed lines effectively guide the viewer - through period-doubling cascade - - Smart use of rasterized=True for 200k-point scatter reducing file size - - Clean minimal code with pre-allocated arrays for performance - - Perfect spec compliance with all required features implemented + - 'Excellent spec compliance: all required features implemented faithfully including + bifurcation point labels, transient discarding, and correct parameter range' + - Strong data storytelling with regime background shading and progressive annotations + guiding the viewer through stable to periodic to chaotic transitions + - Clean, deterministic code with no unnecessary complexity + - Good use of matplotlib-specific features (custom colormap, axvspan, rasterized + scatter, mixed coordinate annotations) weaknesses: - - Annotation font size (12pt) slightly small for target resolution; should be at - least 14pt - - Design could be elevated with density-based coloring or color gradient to convey - point density in chaotic regime - - No visual differentiation between stability regimes (e.g. background shading or - color transitions) - image_description: The plot displays the classic logistic map bifurcation diagram - using Python Blue (#306998) scatter points on a white background. The x-axis is - labeled "Growth Rate (r)" ranging from 2.50 to 4.00, and the y-axis is "Steady-State - Population (x)" from 0.0 to 1.0. The title reads "bifurcation-basic · matplotlib - · pyplots.ai" in medium-weight font at the top. The diagram clearly shows a single - stable fixed point for r < 3.0, then a period-2 bifurcation at r ≈ 3.0, period-4 - at r ≈ 3.449, and period-8 at r ≈ 3.544, each marked with a subtle gray dashed - vertical line and a text annotation. Beyond ~3.57, the chaotic regime fills the - space densely with scattered points, with visible windows of periodicity (white - vertical bands around r ≈ 3.83). Top and right spines are removed. The density - visualization is effective — the small point size (s=0.05) with alpha=0.35 creates - a clear structure that reveals both the bifurcation branches and the chaotic attractor. - Regime labels ("Stable", "Periodic", "Chaotic") appear at the bottom, and an "Onset - of chaos r ≈ 3.57" annotation with a curved arrow is present in the chaotic region. + - Chaotic region (r > 3.57) appears faint - the density of the chaotic attractor + could be more visually prominent with adjusted alpha or point size + - Minor annotation crowding near r 3.544-3.57 where Period-8 and Onset of chaos + labels are close together + - Custom colormap is not perceptually uniform; a viridis-based or cividis-based + scheme would be more accessible + image_description: 'The plot displays a bifurcation diagram of the logistic map + x(n+1) = r·x(n)·(1-x(n)) with Growth Rate (r) on the x-axis (2.5–4.0) and Steady-State + Population (x) on the y-axis (0–1). Three background-shaded regimes are visible: + a light blue "Stable" region (r < 3.0) with a single fixed-point line, a light + purple "Periodic" region (r ≈ 3.0–3.57) showing period-doubling branches splitting + into 2, 4, and 8 branches, and a light pink "Chaotic" region (r > 3.57) with a + faint cloud of scattered points. Dashed vertical lines mark key bifurcation points + at r ≈ 3.0 (Period-2), r ≈ 3.449 (Period-4), and r ≈ 3.544 (Period-8), with an + arrow annotation pointing to the onset of chaos at r ≈ 3.57. The scatter uses + a custom blue-to-purple-to-warm colormap. Top and right spines are removed. Title + reads "bifurcation-basic · matplotlib · pyplots.ai".' criteria_checklist: visual_quality: - score: 29 + score: 26 max: 30 items: - id: VQ-01 name: Text Legibility - score: 7 + score: 8 max: 8 passed: true - comment: Title 24pt, labels 20pt, ticks 16pt explicitly set. Annotation text - at 12pt slightly small for 4800x2700. + comment: 'All font sizes explicitly set: title=24, labels=20, ticks=16, annotations=14. + All readable.' - id: VQ-02 name: No Overlap - score: 6 + score: 5 max: 6 passed: true - comment: All text readable with no collisions. Annotations well-positioned - with offset logic. + comment: Minor crowding between Period-8 and Onset of chaos annotations in + upper right. - id: VQ-03 name: Element Visibility - score: 6 + score: 4 max: 6 passed: true - comment: Point size s=0.05 with alpha=0.35 perfectly adapted to ~200k point - density. + comment: Chaotic region appears faint due to s=0.05 and alpha=0.4. Stable + and periodic branches are clear. - id: VQ-04 name: Color Accessibility - score: 4 + score: 3 max: 4 passed: true - comment: Single Python Blue color scheme. No colorblind issues. + comment: Custom colormap is distinguishable but not perceptually uniform. - id: VQ-05 name: Layout & Canvas score: 4 max: 4 passed: true - comment: Plot fills canvas well with tight_layout at 16:9. + comment: Good 16:9 proportions, plot fills canvas well. - id: VQ-06 name: Axis Labels & Title score: 2 max: 2 passed: true - comment: 'Descriptive labels with parameter notation: Growth Rate (r), Steady-State - Population (x).' + comment: Descriptive labels with parameter notation. design_excellence: - score: 13 + score: 16 max: 20 items: - id: DE-01 name: Aesthetic Sophistication - score: 5 + score: 6 max: 8 passed: true - comment: Thoughtful single-color palette, removed spines, subtle annotation - lines. Above defaults but not publication-grade. + comment: Custom colormap, regime shading, professional typography. Above defaults + but not journal-cover quality. - id: DE-02 name: Visual Refinement - score: 4 + score: 5 max: 6 passed: true - comment: Spines removed, no grid (appropriate for dense scatter), clean whitespace. + comment: Spines removed, subtle regime shading, no grid (appropriate), generous + whitespace. - id: DE-03 name: Data Storytelling - score: 4 + score: 5 max: 6 passed: true - comment: Bifurcation point annotations guide viewer through period-doubling - cascade narrative. + comment: Strong narrative with regime labels and progressive annotations guiding + viewer through route to chaos. spec_compliance: score: 15 max: 15 @@ -119,52 +116,49 @@ review: score: 5 max: 5 passed: true - comment: Correct bifurcation diagram using scatter plot of iterated logistic - map. + comment: Correct bifurcation diagram. - id: SC-02 name: Required Features score: 4 max: 4 passed: true - comment: 'All spec features present: small points, low alpha, period-doubling - cascade, labeled bifurcation points, transient discard.' + comment: All spec features present. - id: SC-03 name: Data Mapping score: 3 max: 3 passed: true - comment: r on x-axis, x on y-axis, correct ranges. + comment: X=parameter r, Y=state x. Full data range shown. - id: SC-04 name: Title & Legend score: 3 max: 3 passed: true - comment: Title follows exact format. No legend needed for single-series. + comment: Correct title format. No legend needed for single-series. data_quality: - score: 15 + score: 14 max: 15 items: - id: DQ-01 name: Feature Coverage - score: 6 + score: 5 max: 6 passed: true - comment: Complete route from stability through period-doubling to chaos with - visible periodicity windows. + comment: Shows full cascade and chaos. Periodic windows within chaos are faintly + visible. - id: DQ-02 name: Realistic Context score: 5 max: 5 passed: true - comment: Logistic map is canonical example for bifurcation diagrams. Neutral - scientific context. + comment: Logistic map is the canonical bifurcation example. Neutral scientific + context. - id: DQ-03 name: Appropriate Scale score: 4 max: 4 passed: true - comment: r from 2.5 to 4.0 with 2000 values, 200 transient + 100 iterations. - Standard parameters. + comment: Standard ranges for the logistic map. code_quality: score: 10 max: 10 @@ -174,32 +168,31 @@ review: score: 3 max: 3 passed: true - comment: 'Clean linear flow: imports, data, plot, style, save. No functions/classes.' + comment: Flat structure with no functions or classes. - id: CQ-02 name: Reproducibility score: 2 max: 2 passed: true - comment: 'Fully deterministic: logistic map with fixed x0=0.5, no random components.' + comment: Fully deterministic with fixed initial condition. - id: CQ-03 name: Clean Imports score: 2 max: 2 passed: true - comment: Only matplotlib.pyplot and numpy, both used. + comment: All three imports are used. - id: CQ-04 name: Code Elegance score: 2 max: 2 passed: true - comment: Appropriate complexity with pre-allocated arrays. + comment: Clean, appropriate complexity. - id: CQ-05 name: Output & API score: 1 max: 1 passed: true - comment: Saves as plot.png with dpi=300, bbox_inches=tight. No deprecated - API. + comment: Saves as plot.png with dpi=300. library_mastery: score: 7 max: 10 @@ -209,23 +202,24 @@ review: score: 4 max: 5 passed: true - comment: Axes methods throughout, annotate with mixed coordinate systems, - rasterized=True. + comment: Proper ax methods, rasterized=True for performance. - id: LM-02 name: Distinctive Features score: 3 max: 5 passed: true - comment: rasterized=True for dense plots and mixed coordinate annotations - are distinctive matplotlib features. + comment: Custom colormap, axvspan, annotate with arrowprops, mixed coordinate + transforms. verdict: REJECTED impl_tags: dependencies: [] techniques: - annotations + - custom-legend patterns: - data-generation - iteration-over-groups dataprep: [] styling: + - custom-colormap - alpha-blending From 1371862445207108f9470a5976ba666d0117df63 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 20 Mar 2026 21:04:00 +0000 Subject: [PATCH 7/8] fix(matplotlib): address review feedback for bifurcation-basic Attempt 3/3 - fixes based on AI review --- .../implementations/matplotlib.py | 59 ++++++++++++------- 1 file changed, 39 insertions(+), 20 deletions(-) diff --git a/plots/bifurcation-basic/implementations/matplotlib.py b/plots/bifurcation-basic/implementations/matplotlib.py index d7b6bbf2d9..639d952f24 100644 --- a/plots/bifurcation-basic/implementations/matplotlib.py +++ b/plots/bifurcation-basic/implementations/matplotlib.py @@ -1,12 +1,12 @@ -""" pyplots.ai +"""pyplots.ai bifurcation-basic: Bifurcation Diagram for Dynamical Systems Library: matplotlib 3.10.8 | Python 3.14.3 Quality: 88/100 | Created: 2026-03-20 """ -import matplotlib.colors as mcolors import matplotlib.pyplot as plt import numpy as np +from matplotlib.colors import PowerNorm # Data @@ -28,9 +28,11 @@ r_plot[i * iterations + j] = r x_plot[i * iterations + j] = x -# Create custom colormap transitioning from Python Blue to a warm accent -cmap = mcolors.LinearSegmentedColormap.from_list("bifurcation", ["#306998", "#4A90D9", "#7B68AE", "#C06070"], N=256) -norm = mcolors.Normalize(vmin=r_min, vmax=r_max) +# Create 2D histogram for density-based rendering of the chaotic region +# This reveals structure (periodic windows, attractor density) far better than scatter +r_bins = 800 +x_bins = 600 +hist, r_edges, x_edges = np.histogram2d(r_plot, x_plot, bins=[r_bins, x_bins], range=[[r_min, r_max], [0, 1]]) # Plot fig, ax = plt.subplots(figsize=(16, 9)) @@ -38,50 +40,68 @@ # Subtle regime background shading ax.axvspan(r_min, 3.0, color="#E8F4FD", alpha=0.3, zorder=0) ax.axvspan(3.0, 3.57, color="#F0EBF8", alpha=0.3, zorder=0) -ax.axvspan(3.57, r_max, color="#FDE8E8", alpha=0.25, zorder=0) +ax.axvspan(3.57, r_max, color="#FDE8E8", alpha=0.2, zorder=0) -ax.scatter(r_plot, x_plot, s=0.05, c=r_plot, cmap=cmap, norm=norm, alpha=0.4, linewidths=0, rasterized=True) +# Density heatmap with PowerNorm to reveal structure across the full range +# cividis is perceptually uniform and colorblind-safe +ax.pcolormesh( + r_edges, + x_edges, + hist.T, + cmap="cividis", + norm=PowerNorm(gamma=0.35, vmin=0, vmax=hist.max()), + rasterized=True, + zorder=1, +) -# Regime labels at bottom +# Regime labels at bottom with semi-transparent background for readability +label_bbox = {"boxstyle": "round,pad=0.3", "facecolor": "white", "edgecolor": "none", "alpha": 0.7} for rx, label in [(2.75, "Stable"), (3.28, "Periodic"), (3.78, "Chaotic")]: ax.text( rx, - 0.03, + 0.04, label, transform=ax.get_xaxis_transform(), fontsize=14, - color="#888888", + color="#666666", ha="center", va="bottom", fontstyle="italic", + bbox=label_bbox, + zorder=3, ) -# Annotations for key bifurcation points -bifurcation_points = [(3.0, "Period-2", -14), (3.449, "Period-4", -55), (3.544, "Period-8", 14)] -for r_bif, label, x_offset in bifurcation_points: - ax.axvline(r_bif, color="#B0B0B0", linewidth=0.8, linestyle="--", alpha=0.4) +# Annotations for key bifurcation points — well spaced +bifurcation_points = [(3.0, "Period-2", -14, 0.97), (3.449, "Period-4", -60, 0.97), (3.544, "Period-8", -60, 0.87)] +for r_bif, label, x_offset, y_frac in bifurcation_points: + ax.axvline(r_bif, color="#CCCCCC", linewidth=0.8, linestyle="--", alpha=0.6, zorder=2) ha = "right" if x_offset < 0 else "left" + ann_bbox = {"boxstyle": "round,pad=0.3", "facecolor": "white", "edgecolor": "none", "alpha": 0.8} ax.annotate( f"{label} r ≈ {r_bif}", - xy=(r_bif, 0.97), + xy=(r_bif, y_frac), xycoords=("data", "axes fraction"), xytext=(x_offset, 0), textcoords="offset points", fontsize=14, - color="#555555", + color="#444444", ha=ha, va="top", + bbox=ann_bbox, + zorder=4, ) # Onset of chaos annotation ax.annotate( "Onset of chaos\nr ≈ 3.57", xy=(3.57, 0.75), - xytext=(3.72, 0.88), + xytext=(3.75, 0.93), fontsize=14, - color="#555555", + color="#444444", ha="center", - arrowprops={"arrowstyle": "->", "color": "#999999", "connectionstyle": "arc3,rad=-0.2"}, + bbox={"boxstyle": "round,pad=0.3", "facecolor": "white", "edgecolor": "none", "alpha": 0.8}, + arrowprops={"arrowstyle": "->", "color": "#666666", "connectionstyle": "arc3,rad=-0.2"}, + zorder=4, ) # Style @@ -94,5 +114,4 @@ ax.spines["top"].set_visible(False) ax.spines["right"].set_visible(False) -plt.tight_layout() plt.savefig("plot.png", dpi=300, bbox_inches="tight") From 1ac4b3ff7f5acc9fc62a773f7fdf159dca401bcb Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Fri, 20 Mar 2026 21:08:54 +0000 Subject: [PATCH 8/8] chore(matplotlib): update quality score 94 and review feedback for bifurcation-basic --- .../implementations/matplotlib.py | 4 +- .../metadata/matplotlib.yaml | 141 +++++++++--------- 2 files changed, 74 insertions(+), 71 deletions(-) diff --git a/plots/bifurcation-basic/implementations/matplotlib.py b/plots/bifurcation-basic/implementations/matplotlib.py index 639d952f24..c6a007a8ed 100644 --- a/plots/bifurcation-basic/implementations/matplotlib.py +++ b/plots/bifurcation-basic/implementations/matplotlib.py @@ -1,7 +1,7 @@ -"""pyplots.ai +""" pyplots.ai bifurcation-basic: Bifurcation Diagram for Dynamical Systems Library: matplotlib 3.10.8 | Python 3.14.3 -Quality: 88/100 | Created: 2026-03-20 +Quality: 94/100 | Created: 2026-03-20 """ import matplotlib.pyplot as plt diff --git a/plots/bifurcation-basic/metadata/matplotlib.yaml b/plots/bifurcation-basic/metadata/matplotlib.yaml index 6ceb97251c..3145bb8745 100644 --- a/plots/bifurcation-basic/metadata/matplotlib.yaml +++ b/plots/bifurcation-basic/metadata/matplotlib.yaml @@ -1,7 +1,7 @@ library: matplotlib specification_id: bifurcation-basic created: '2026-03-20T20:28:45Z' -updated: '2026-03-20T20:53:08Z' +updated: '2026-03-20T21:08:54Z' generated_by: claude-opus-4-5-20251101 workflow_run: 23361206203 issue: 4415 @@ -10,37 +10,38 @@ library_version: 3.10.8 preview_url: https://storage.googleapis.com/pyplots-images/plots/bifurcation-basic/matplotlib/plot.png preview_thumb: https://storage.googleapis.com/pyplots-images/plots/bifurcation-basic/matplotlib/plot_thumb.png preview_html: null -quality_score: 88 +quality_score: 94 review: strengths: - - 'Excellent spec compliance: all required features implemented faithfully including - bifurcation point labels, transient discarding, and correct parameter range' - - Strong data storytelling with regime background shading and progressive annotations - guiding the viewer through stable to periodic to chaotic transitions - - Clean, deterministic code with no unnecessary complexity - - Good use of matplotlib-specific features (custom colormap, axvspan, rasterized - scatter, mixed coordinate annotations) + - Density heatmap approach (histogram2d + pcolormesh + PowerNorm) is far superior + to scatter for revealing bifurcation structure including periodic windows within + chaos + - Excellent data storytelling with regime labels, bifurcation annotations, and Onset + of chaos arrow creating a clear narrative + - Cohesive design with cividis colormap, consistent annotation styling, and subtle + regime background shading + - All spec requirements fully satisfied with appropriate parameter choices + - Clean, deterministic, well-structured code weaknesses: - - Chaotic region (r > 3.57) appears faint - the density of the chaotic attractor - could be more visually prominent with adjusted alpha or point size - - Minor annotation crowding near r 3.544-3.57 where Period-8 and Onset of chaos - labels are close together - - Custom colormap is not perceptually uniform; a viridis-based or cividis-based - scheme would be more accessible + - Regime background shading (axvspan) is largely invisible in the periodic and chaotic + regions because the heatmap covers it image_description: 'The plot displays a bifurcation diagram of the logistic map - x(n+1) = r·x(n)·(1-x(n)) with Growth Rate (r) on the x-axis (2.5–4.0) and Steady-State - Population (x) on the y-axis (0–1). Three background-shaded regimes are visible: - a light blue "Stable" region (r < 3.0) with a single fixed-point line, a light - purple "Periodic" region (r ≈ 3.0–3.57) showing period-doubling branches splitting - into 2, 4, and 8 branches, and a light pink "Chaotic" region (r > 3.57) with a - faint cloud of scattered points. Dashed vertical lines mark key bifurcation points - at r ≈ 3.0 (Period-2), r ≈ 3.449 (Period-4), and r ≈ 3.544 (Period-8), with an - arrow annotation pointing to the onset of chaos at r ≈ 3.57. The scatter uses - a custom blue-to-purple-to-warm colormap. Top and right spines are removed. Title - reads "bifurcation-basic · matplotlib · pyplots.ai".' + using a density-based heatmap (pcolormesh) with the cividis colormap on a dark + blue background. The x-axis shows "Growth Rate (r)" ranging from 2.5 to 4.0, and + the y-axis shows "Steady-State Population (x)" from 0 to 1.0. The title reads + "bifurcation-basic · matplotlib · pyplots.ai" in large text at the top. The stable + fixed-point branch appears as a bright yellowish line from r=2.5 to r=3.0, then + period-doubling cascades are clearly visible as the branches split. Three regime + background shadings are subtly applied (light blue for stable, light purple for + periodic, light red for chaotic). Dashed vertical lines mark key bifurcation points + with annotations: "Period-2 r ≈ 3.0", "Period-4 r ≈ 3.449", "Period-8 r ≈ 3.544", + and "Onset of chaos r ≈ 3.57" (with an arrow). Regime labels ("Stable", "Periodic", + "Chaotic") appear at the bottom in italic with white rounded boxes. Top and right + spines are removed. The chaotic region shows rich density structure including + periodic windows.' criteria_checklist: visual_quality: - score: 26 + score: 30 max: 30 items: - id: VQ-01 @@ -48,40 +49,40 @@ review: score: 8 max: 8 passed: true - comment: 'All font sizes explicitly set: title=24, labels=20, ticks=16, annotations=14. - All readable.' + comment: 'All font sizes explicitly set: title 24pt, labels 20pt, ticks 16pt, + annotations 14pt' - id: VQ-02 name: No Overlap - score: 5 + score: 6 max: 6 passed: true - comment: Minor crowding between Period-8 and Onset of chaos annotations in - upper right. + comment: All annotations well-spaced, no text collisions - id: VQ-03 name: Element Visibility - score: 4 + score: 6 max: 6 passed: true - comment: Chaotic region appears faint due to s=0.05 and alpha=0.4. Stable - and periodic branches are clear. + comment: Density heatmap with PowerNorm reveals structure excellently across + full range - id: VQ-04 name: Color Accessibility - score: 3 + score: 4 max: 4 passed: true - comment: Custom colormap is distinguishable but not perceptually uniform. + comment: Cividis is perceptually uniform and colorblind-safe - id: VQ-05 name: Layout & Canvas score: 4 max: 4 passed: true - comment: Good 16:9 proportions, plot fills canvas well. + comment: 16:9 figsize with bbox_inches tight, balanced margins - id: VQ-06 name: Axis Labels & Title score: 2 max: 2 passed: true - comment: Descriptive labels with parameter notation. + comment: 'Descriptive labels with variable names: Growth Rate (r), Steady-State + Population (x)' design_excellence: score: 16 max: 20 @@ -91,22 +92,22 @@ review: score: 6 max: 8 passed: true - comment: Custom colormap, regime shading, professional typography. Above defaults - but not journal-cover quality. + comment: Strong design with density heatmap, cividis colormap, regime shading, + cohesive annotation styling - id: DE-02 name: Visual Refinement score: 5 max: 6 passed: true - comment: Spines removed, subtle regime shading, no grid (appropriate), generous - whitespace. + comment: Spines removed, no grid, subtle dashed lines, consistent bbox styling. + Regime shading partially hidden under heatmap - id: DE-03 name: Data Storytelling score: 5 max: 6 passed: true - comment: Strong narrative with regime labels and progressive annotations guiding - viewer through route to chaos. + comment: Clear narrative from stability to chaos with regime labels, bifurcation + annotations, and onset-of-chaos arrow spec_compliance: score: 15 max: 15 @@ -116,49 +117,51 @@ review: score: 5 max: 5 passed: true - comment: Correct bifurcation diagram. + comment: Correct bifurcation diagram using density heatmap - id: SC-02 name: Required Features score: 4 max: 4 passed: true - comment: All spec features present. + comment: 'All spec requirements met: logistic map, transient discard, labeled + bifurcation points' - id: SC-03 name: Data Mapping score: 3 max: 3 passed: true - comment: X=parameter r, Y=state x. Full data range shown. + comment: X=parameter r, Y=state x, full range 2.5-4.0 - id: SC-04 name: Title & Legend score: 3 max: 3 passed: true - comment: Correct title format. No legend needed for single-series. + comment: Correct title format, no legend needed for single-series density + plot data_quality: - score: 14 + score: 15 max: 15 items: - id: DQ-01 name: Feature Coverage - score: 5 + score: 6 max: 6 passed: true - comment: Shows full cascade and chaos. Periodic windows within chaos are faintly - visible. + comment: Shows stable fixed point, period-doubling cascade, chaos, and periodic + windows - id: DQ-02 name: Realistic Context score: 5 max: 5 passed: true - comment: Logistic map is the canonical bifurcation example. Neutral scientific - context. + comment: Logistic map is the canonical example, real scientific context - id: DQ-03 name: Appropriate Scale score: 4 max: 4 passed: true - comment: Standard ranges for the logistic map. + comment: 'Standard parameter ranges: r 2.5-4.0, x 0-1, 2000 r values, 200 + transient, 100 iterations' code_quality: score: 10 max: 10 @@ -168,33 +171,33 @@ review: score: 3 max: 3 passed: true - comment: Flat structure with no functions or classes. + comment: Clean linear structure with no functions or classes - id: CQ-02 name: Reproducibility score: 2 max: 2 passed: true - comment: Fully deterministic with fixed initial condition. + comment: 'Fully deterministic: logistic map from fixed x=0.5' - id: CQ-03 name: Clean Imports score: 2 max: 2 passed: true - comment: All three imports are used. + comment: All three imports used - id: CQ-04 name: Code Elegance score: 2 max: 2 passed: true - comment: Clean, appropriate complexity. + comment: Elegant histogram2d approach for density, no fake UI - id: CQ-05 name: Output & API score: 1 max: 1 passed: true - comment: Saves as plot.png with dpi=300. + comment: Saves as plot.png with dpi=300, current API library_mastery: - score: 7 + score: 8 max: 10 items: - id: LM-01 @@ -202,24 +205,24 @@ review: score: 4 max: 5 passed: true - comment: Proper ax methods, rasterized=True for performance. + comment: Consistent Axes methods, proper fig/ax pattern, object-oriented API - id: LM-02 name: Distinctive Features - score: 3 + score: 4 max: 5 passed: true - comment: Custom colormap, axvspan, annotate with arrowprops, mixed coordinate - transforms. - verdict: REJECTED + comment: PowerNorm, pcolormesh, axvspan, annotate with mixed coordinate systems + verdict: APPROVED impl_tags: dependencies: [] techniques: - annotations - - custom-legend + - layer-composition patterns: - data-generation - - iteration-over-groups - dataprep: [] + - matrix-construction + dataprep: + - binning styling: - custom-colormap - alpha-blending