diff --git a/.gitignore b/.gitignore index a547bf3..094c172 100644 --- a/.gitignore +++ b/.gitignore @@ -22,3 +22,7 @@ dist-ssr *.njsproj *.sln *.sw? + +# project configuration +config.yml +!examples/config.yml diff --git a/.somesy.toml b/.somesy.toml index 8bf901d..2b92a17 100644 --- a/.somesy.toml +++ b/.somesy.toml @@ -1,34 +1,31 @@ [project] -name = "beamer-gui" -version = "0.0.1" -description = "A GUI for creating a Beamer presentation using LaTeX." -keywords = ["beamer", "latex"] +name = "rdf-graph-visualization" +version = "0.1.0" +description = "Visualization of RDF graphs in Turtle format in 3D on the web." +keywords = ["rdf", "graph", "turtle", "visualization"] license = "MIT" -repository = "https://github.com/Materials-Data-Science-and-Informatics/beamer-gui" +repository = "https://github.com/Materials-Data-Science-and-Informatics/rdf-graph-visualization" +homepage = "https://github.com/Materials-Data-Science-and-Informatics/rdf-graph-visualization" [[project.people]] family-names = "Soylu" given-names = "Mustafa" email = "m.soylu@fz-juelich.de" orcid = "https://orcid.org/0000-0003-2637-0432" - -contribution = "Main developer and project manager." -contribution_types = ["maintenance", "code", "test", "review", "doc"] - +contribution = "The main author, maintainer and tester." +contribution_begin = "2023-03-01" +contribution_types = ["ideas", "code", "design", "test"] author = true maintainer = true [[project.people]] -family-names = "D'Mello" -given-names = "Fiona" -orcid = "https://orcid.org/0000-0002-0465-1009" -email = "f.dmello@fz-juelich.de" - -contribution = "Main developer." -contribution_types = ["ideas", "code", "test", "review", "doc"] - -author = true +family-names = "Fathalla" +given-names = "Said" +email = "s.fathalla@fz-juelich.de" +orcid = "https://orcid.org/0000-0002-2818-5890" +contribution_begin = "2023-03-01" +contribution_types = ["ideas", "userTesting"] [[project.people]] family-names = "Hofmann" @@ -36,6 +33,10 @@ given-names = "Volker" email = "v.hofmann@fz-juelich.de" orcid = "https://orcid.org/0000-0002-5149-603X" +contribution = "Discussions and suggestions concerning tool scope and usability." +contribution_begin = "2023-06-01" +contribution_end = "2023-06-30" +contribution_types = ["ideas", "userTesting"] publication_author = true [[project.people]] @@ -44,7 +45,5 @@ given-names = "Stefan" email = "s.sandfeld@fz-juelich.de" orcid = "https://orcid.org/0000-0001-9560-4728" -contribution_types = ["ideas", "fundingFinding"] - +contribution_types = ["fundingFinding"] publication_author = true - diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 0000000..5e9ae95 --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,34 @@ +cff-version: 1.2.0 +message: If you use this software, please cite it using these metadata. +type: software +title: rdf-graph-visualization +abstract: Visualization of RDF graphs in Turtle format in 3D on the web. +version: 0.1.0 +keywords: +- rdf +- graph +- turtle +- visualization +authors: +- family-names: Soylu + given-names: Mustafa + orcid: https://orcid.org/0000-0003-2637-0432 + email: m.soylu@fz-juelich.de +- family-names: Hofmann + given-names: Volker + orcid: https://orcid.org/0000-0002-5149-603X + email: v.hofmann@fz-juelich.de +- family-names: Sandfeld + given-names: Stefan + orcid: https://orcid.org/0000-0001-9560-4728 + email: s.sandfeld@fz-juelich.de +contact: +- family-names: Soylu + given-names: Mustafa + orcid: https://orcid.org/0000-0003-2637-0432 + email: m.soylu@fz-juelich.de +license: MIT +repository-code: + https://github.com/Materials-Data-Science-and-Informatics/rdf-graph-visualization +url: + https://github.com/Materials-Data-Science-and-Informatics/rdf-graph-visualization diff --git a/README.md b/README.md index 74872fd..1f88184 100644 --- a/README.md +++ b/README.md @@ -1,50 +1,90 @@ -# React + TypeScript + Vite +# RDF Graph Visualization -This template provides a minimal setup to get React working in Vite with HMR and some ESLint rules. +## Description +This project is a TypeScript/JavaScript application that processes RDF data to create a graph representation. It uses React for the frontend and Chakra UI for styling. -Currently, two official plugins are available: +We strongly suggest users to use `turtle` format for RDF data and `schema.org` vocabulary for the properties. The application is designed to work with the `schema.org` vocabulary, since we developed it for a specific use case. However, it can be easily modified to work with other vocabularies. -- [@vitejs/plugin-react](https://github.com/vitejs/vite-plugin-react/blob/main/packages/plugin-react/README.md) uses [Babel](https://babeljs.io/) for Fast Refresh -- [@vitejs/plugin-react-swc](https://github.com/vitejs/vite-plugin-react-swc) uses [SWC](https://swc.rs/) for Fast Refresh +## Features +- Parses RDF data and filters relevant properties. +- Creates nodes and edges for a graph representation. +- Filters and displays nodes based on user-selected criteria. -## Expanding the ESLint configuration +## Installation +1. Clone the repository. -If you are developing a production application, we recommend updating the configuration to enable type aware lint rules: +```bash +git clone https://github.com/Materials-Data-Science-and-Informatics/rdf-graph-visualization.git +``` +2. Install dependencies: + +```bash +npm install +``` + +3. Create the `config.yml` file in the root directory and set it according to next section. +4. You can run the application with: -- Configure the top-level `parserOptions` property like this: +```bash +npm run dev +``` + +5. Or you can build the application with below command and serve it with a web server. -```js -export default tseslint.config({ - languageOptions: { - // other options... - parserOptions: { - project: ['./tsconfig.node.json', './tsconfig.app.json'], - tsconfigRootDir: import.meta.dirname, - }, - }, -}) +```bash +npm run build ``` -- Replace `tseslint.configs.recommended` to `tseslint.configs.recommendedTypeChecked` or `tseslint.configs.strictTypeChecked` -- Optionally add `...tseslint.configs.stylisticTypeChecked` -- Install [eslint-plugin-react](https://github.com/jsx-eslint/eslint-plugin-react) and update the config: - -```js -// eslint.config.js -import react from 'eslint-plugin-react' - -export default tseslint.config({ - // Set the react version - settings: { react: { version: '18.3' } }, - plugins: { - // Add the react plugin - react, - }, - rules: { - // other rules... - // Enable its recommended rules - ...react.configs.recommended.rules, - ...react.configs['jsx-runtime'].rules, - }, -}) +## Configuration +Configuration file has the necessary information to show nodes and links in the graph. Since a 3D graph on the browser consumes a lot of resources, it is important to filter the data to show only the necessary information. Properties that are not in the yaml file will be ignored. You can check [example config file](examples/config.yml) for more information. +You can also check example RDF files in the examples folder to see how the data should be formatted. + +The configuration file is a YAML file that has the following properties: +```yaml +# links will be created from these properties +relationProperties: + - "http://schema.org/affiliation" + +# labels will be created from these properties +labelProperties: + - "http://schema.org/name" + +# groups will be created from these properties +groups: + - name: 'Organization' + types: + - 'http://schema.org/Organization' + properties: + - 'http://schema.org/affiliation' + color: '#FF0000' ``` + +- `relationProperties`: List of properties that will be used to create links between nodes. +- `labelProperties`: List of properties that will be used to create labels for nodes. +- `groups`: List of groups that will be created based on the properties. Each group has the following properties: + - `name`: Name of the group. + - `types`: List of types that will be included in the group. + - `properties`: List of properties that will be used to filter the data. **Can be empty.** + - `color`: Color of the group. Please use HEX color codes. + +## How to Cite + +If you want to cite this project in your scientific work, +please use the [citation file](https://citation-file-format.github.io/) +in the [repository](https://github.com/Materials-Data-Science-and-Informatics/rdf-graph-visualization/blob/main/CITATION.cff). + +## Acknowledgements + +We kindly thank all authors and contributors. + +
+HMC Logo +   +FZJ Logo +
+
+ +This project was developed at the Institute for Materials Data Science and Informatics +(IAS-9) of the Jülich Research Center and funded by the Helmholtz Metadata Collaboration +(HMC), an incubator-platform of the Helmholtz Association within the framework of the +Information and Data Science strategic initiative. \ No newline at end of file diff --git a/codemeta.json b/codemeta.json new file mode 100644 index 0000000..c733586 --- /dev/null +++ b/codemeta.json @@ -0,0 +1,66 @@ +{ + "@context": [ + "https://doi.org/10.5063/schema/codemeta-2.0", + "https://w3id.org/software-iodata", + "https://raw.githubusercontent.com/jantman/repostatus.org/master/badges/latest/ontology.jsonld", + "https://schema.org", + "https://w3id.org/software-types" + ], + "@type": "SoftwareSourceCode", + "author": [ + { + "@type": "Person", + "givenName": "Mustafa", + "familyName": "Soylu", + "email": "m.soylu@fz-juelich.de", + "@id": "https://orcid.org/0000-0003-2637-0432" + } + ], + "name": "rdf-graph-visualization", + "description": "Visualization of RDF graphs in Turtle format in 3D on the web.", + "version": "0.1.0", + "keywords": [ + "rdf", + "graph", + "turtle", + "visualization" + ], + "maintainer": [ + { + "@type": "Person", + "givenName": "Mustafa", + "familyName": "Soylu", + "email": "m.soylu@fz-juelich.de", + "@id": "https://orcid.org/0000-0003-2637-0432" + } + ], + "license": [ + "https://spdx.org/licenses/MIT" + ], + "softwareHelp": "https://github.com/Materials-Data-Science-and-Informatics/rdf-graph-visualization", + "codeRepository": "https://github.com/Materials-Data-Science-and-Informatics/rdf-graph-visualization", + "contributor": [ + { + "@type": "Person", + "givenName": "Said", + "familyName": "Fathalla", + "email": "s.fathalla@fz-juelich.de", + "@id": "https://orcid.org/0000-0002-2818-5890" + }, + { + "@type": "Person", + "givenName": "Volker", + "familyName": "Hofmann", + "email": "v.hofmann@fz-juelich.de", + "@id": "https://orcid.org/0000-0002-5149-603X" + }, + { + "@type": "Person", + "givenName": "Stefan", + "familyName": "Sandfeld", + "email": "s.sandfeld@fz-juelich.de", + "@id": "https://orcid.org/0000-0001-9560-4728" + } + ], + "url": "https://github.com/Materials-Data-Science-and-Informatics/rdf-graph-visualization" +} \ No newline at end of file diff --git a/eslint.config.js b/eslint.config.js index 092408a..360139f 100644 --- a/eslint.config.js +++ b/eslint.config.js @@ -8,7 +8,7 @@ export default tseslint.config( { ignores: ['dist'] }, { extends: [js.configs.recommended, ...tseslint.configs.recommended], - files: ['**/*.{ts,tsx}'], + files: ['{**/*,*}.{js,ts,jsx,tsx,html,vue},{!node_modules/*}'], languageOptions: { ecmaVersion: 2020, globals: globals.browser, diff --git a/examples/config.yml b/examples/config.yml new file mode 100644 index 0000000..717e17f --- /dev/null +++ b/examples/config.yml @@ -0,0 +1,59 @@ +# links will be created from these properties +relationProperties: + - "http://schema.org/affiliation" + - "http://schema.org/dataPublished" + - "http://schema.org/dateModified" + - "http://schema.org/provider" + - "http://schema.org/license" + - "http://schema.org/publisher" + - "http://schema.org/author" + - "http://schema.org/creator" + - "http://schema.org/keywords" + +# labels will be created from these properties +labelProperties: + - "http://schema.org/name" + - "http://schema.org/text" + - "http://schema.org/comment" + +# groups will be created from these properties +groups: + - name: 'Organization' + types: # below types will be in the organization group + - 'http://schema.org/Organization' + properties: # object of below properties will be in the organization group + - 'http://schema.org/affiliation' + - 'http://schema.org/provider' + - 'http://schema.org/publisher' + color: '#008000' # color of the nodes in this group on 3D view + - name: 'Person' + types: + - 'http://schema.org/Person' + properties: + - 'http://schema.org/author' + - 'http://schema.org/creator' + color: '#FF0000' + - name: 'Dataset' + types: + - 'http://schema.org/Dataset' + color: '#0000FF' + - name: 'Software' + types: + - 'http://schema.org/SoftwareSourceCode' + color: '#FFFF00' + - name: 'Document' + types: + - 'http://schema.org/Document' + color: '#FFA500' + - name: 'Article' + types: + - 'http://schema.org/Article' + color: '#4B0082' + - name: 'CreativeWork' + types: + - 'http://schema.org/CreativeWork' + color: '#8A2BE2' + - name: 'Service' + types: + - 'http://schema.org/Service' + color: '#00FFFF' \ No newline at end of file diff --git a/examples/large-graph.ttl b/examples/large-graph.ttl new file mode 100644 index 0000000..8c63ba7 --- /dev/null +++ b/examples/large-graph.ttl @@ -0,0 +1,10027 @@ +@prefix owl: . +@prefix rdf: . +@prefix xml: . +@prefix xsd: . +@prefix rdfs: . +@prefix schema: . +@prefix rdf: . +@prefix ns1: . +@prefix schema: . +ns1:Publ-31165 rdf:type schema:CreativeWork . + rdf:type schema:CreativeWork ; + schema:datePublished "1994"^^schema:Date ; + schema:identifier "ftp://ftp.bsrn.awi.de/bou/bou1194.dat.gz" , + ; + schema:name "BSRN Station-to-archive file for station Boulder (1994-11)" ; + schema:url ; + schema:creator _:b12680894 , + _:b5516088 , + _:b9086543 , + _:b7603557 . + rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isPartOf _:b5516114 ; + schema:issueNumber "49(8)" ; + schema:pagination "1825-1835" ; + schema:datePublished "1985"^^schema:Date ; + schema:identifier ; + schema:name "Alkaline permanganate oxidation of kerogens from Cretaceous black shales thermally altered by diabase intrusions and laboratory simulations" ; + schema:url ; + schema:creator _:b5516158 , + _:b5516138 , + _:b5516123 . + rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isBasedOn ; + schema:isPartOf _:b9168175 , + _:b7647084 , + _:b6160758 , + _:b5516275 ; + schema:issueNumber "177" ; + schema:pagination "186-200" ; + schema:datePublished "2019"^^schema:Date ; + schema:identifier "https://doi.org/10.1016/j.gloplacha.2019.04.005" , + ; + schema:name "Sediment residence time reveals Holocene shift from climatic to vegetation control on catchment erosion in the Balkans" ; + schema:url ; + schema:creator , + _:b5516255 , + _:b5516271 , + , + , + _:b9168157 , + _:b9168147 , + , + , + _:b7647040 , + _:b7647044 , + , + , + _:b6160756 , + _:b6160748 , + . + rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isBasedOn ; + schema:isPartOf _:b5516542 ; + schema:issueNumber "172" ; + schema:pagination "1-12" ; + schema:datePublished "2001"^^schema:Date ; + schema:identifier ; + schema:name "High-resolution carbonate content estimated from diffuse spectral reflectance for Leg 172 sites" ; + schema:url ; + schema:creator , + _:b5516551 , + _:b5516532 , + _:b5516533 , + , + . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier ; + schema:name "Parameter comments for Helgoland Roads Mesozooplankton, 2009" ; + schema:url . + rdf:type schema:CreativeWork , + schema:Dataset ; + schema:comment "Carbon per cell of prey and grazer calculated using the following equation of Menden-Deuer and Lessard (2000): picogram carbon per cell = 0.216*biovolume**0.939." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" . +@prefix xsd: . + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b5516977 ; + schema:variableMeasured _:b5516962 , + _:b5516964 , + _:b5516965 , + _:b5516971 , + _:b5516968 , + _:b5516974 , + _:b5516972 , + _:b5516973 , + _:b5516978 , + _:b5516982 , + _:b5516983 , + _:b5516986 , + _:b5516985 , + _:b5516991 , + _:b5516989 , + _:b5516998 , + _:b5516996 ; + schema:datePublished "2014"^^schema:Date , + "2014-01-22"^^schema:Date ; + schema:description "Carbon per cell of prey and grazer calculated using the following equation of Menden-Deuer and Lessard (2000): picogram carbon per cell = 0.216*biovolume**0.939." ; + schema:distribution _:b5516975 , + _:b5516967 ; + schema:identifier , + "https://doi.org/10.1594/PANGAEA.825554" ; + schema:includedInDataCatalog _:b5516990 ; + schema:license ; + schema:name "Feeding, growth and grazing rates of the oligotrich ciliate Strombidium sulcatum determined experimentally" ; + schema:publisher _:b5516988 ; + schema:url ; + schema:citation , + ; + schema:creator , + . + rdf:type schema:CreativeWork ; + schema:datePublished "2005"^^schema:Date ; + schema:identifier ; + schema:name "BSRN Station-to-archive file for station Chesapeake Light (2005-04)" ; + schema:url ; + schema:creator _:b5517045 . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b12456253 ; + schema:sourceOrganization ; + schema:spatialCoverage _:b12456247 ; + schema:temporalCoverage "2015-08-01T00:10:00/2015-08-22T23:50:15" ; + schema:variableMeasured _:b12456244 , + _:b12456245 , + _:b12456254 , + _:b12456251 , + _:b12456249 ; + schema:workExample ; + schema:datePublished "2015"^^schema:Date , + "2015-12-03"^^schema:Date ; + schema:description "This dataset is about: Station list and links to master tracks in different resolutions of HEINCKE cruise HE449, Trondheim - Troms\u00F8, 2015-08-01 - 2015-08-22." ; + schema:distribution _:b12456255 , + _:b12456246 ; + schema:identifier , + "https://doi.org/10.1594/PANGAEA.855526" ; + schema:includedInDataCatalog _:b12456250 ; + schema:license ; + schema:name "Station list and links to master tracks in different resolutions of HEINCKE cruise HE449, Trondheim - Troms\u00F8, 2015-08-01 - 2015-08-22" ; + schema:publisher _:b12456248 ; + schema:url ; + schema:citation , + , + , + ; + schema:creator . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b14727408 ; + schema:sourceOrganization ; + schema:spatialCoverage _:b14727401 ; + schema:temporalCoverage "2015-08-04T16:27:00/2015-08-18T08:39:00" ; + schema:variableMeasured _:b14727379 , + _:b14727380 , + _:b14727381 , + _:b14727387 , + _:b14727384 , + _:b14727388 , + _:b14727371 , + _:b14727374 , + _:b14727375 , + _:b14727373 , + _:b14727411 , + _:b14727395 , + _:b14727393 , + _:b14727399 , + _:b14727402 , + _:b14727403 , + _:b14727404 ; + schema:datePublished "2016-04-15"^^schema:Date , + "2016"^^schema:Date ; + schema:description "This dataset is about: Physical oceanography during HEINCKE cruise HE449." ; + schema:distribution _:b14727382 , + _:b14727398 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.859616" , + ; + schema:includedInDataCatalog _:b14727370 ; + schema:license ; + schema:name "Physical oceanography during HEINCKE cruise HE449" ; + schema:publisher _:b14727385 ; + schema:url ; + schema:citation ; + schema:creator _:b14727396 , + _:b5517068 , + . +@prefix ns4: . +ns4:srep42997 rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isBasedOn ; + schema:isPartOf _:b14175771 , + _:b15039982 , + _:b6587400 , + _:b5517075 , + _:b14342417 ; + schema:issueNumber "7" ; + schema:pagination "42997" ; + schema:datePublished "2017"^^schema:Date ; + schema:identifier "https://doi.org/10.1038/srep42997" , + ns4:srep42997 ; + schema:name "Widespread methane seepage along the continental margin off Svalbard - from Bj\u00F8rn\u00F8ya to Kongsfjorden" ; + schema:url ns4:srep42997 ; + schema:creator _:b14175775 , + , + _:b14342405 , + , + _:b6587391 , + , + , + , + , + _:b5517067 , + , + , + , + _:b15039973 , + . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b5568195 ; + schema:sourceOrganization ; + schema:spatialCoverage _:b5568194 ; + schema:temporalCoverage "2015-08-25T08:40:00/2015-09-07T15:20:00" ; + schema:variableMeasured _:b5568185 , + _:b5568191 , + _:b5568189 , + _:b5568182 , + _:b5568183 , + _:b5568180 ; + schema:datePublished "2016"^^schema:Date , + "2016-07-28"^^schema:Date ; + schema:description "This dataset is about: Continuous thermosalinograph oceanography along HEINCKE cruise track HE450." ; + schema:distribution _:b5568196 , + _:b5568179 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.863417" , + ; + schema:includedInDataCatalog _:b5568192 ; + schema:license ; + schema:name "Continuous thermosalinograph oceanography along HEINCKE cruise track HE450" ; + schema:publisher _:b5568188 ; + schema:url ; + schema:citation ; + schema:creator , + _:b5517073 , + _:b5568181 . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b14759970 ; + schema:sourceOrganization ; + schema:spatialCoverage _:b14759975 ; + schema:temporalCoverage "2015-08-01T06:20:00/2015-08-17T13:10:00" ; + schema:variableMeasured _:b14759966 , + _:b14759967 , + _:b14759973 , + _:b14759971 , + _:b14759969 , + _:b14759983 ; + schema:datePublished "2016"^^schema:Date , + "2016-07-28"^^schema:Date ; + schema:description "This dataset is about: Continuous thermosalinograph oceanography along HEINCKE cruise track HE449." ; + schema:distribution _:b14759981 , + _:b14759978 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.863416" , + ; + schema:includedInDataCatalog _:b14759980 ; + schema:license ; + schema:name "Continuous thermosalinograph oceanography along HEINCKE cruise track HE449" ; + schema:publisher _:b14759977 ; + schema:url ; + schema:citation ; + schema:creator _:b14759976 , + _:b5517065 , + . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b12356065 ; + schema:sourceOrganization ; + schema:spatialCoverage _:b12356044 ; + schema:temporalCoverage "2015-08-27T06:12:00/2015-09-07T13:26:00" ; + schema:variableMeasured _:b12356039 , + _:b12356042 , + _:b12356040 , + _:b12356041 , + _:b12356051 , + _:b12356048 , + _:b12356049 , + _:b12356054 , + _:b12356055 , + _:b12356052 , + _:b12356056 , + _:b12356063 , + _:b12356060 , + _:b12356061 , + _:b12356064 , + _:b12356074 , + _:b12356073 ; + schema:datePublished "2016-04-15"^^schema:Date , + "2016"^^schema:Date ; + schema:description "This dataset is about: Physical oceanography during HEINCKE cruise HE450." ; + schema:distribution _:b12356068 , + _:b12356069 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.859617" , + ; + schema:includedInDataCatalog _:b12356045 ; + schema:license ; + schema:name "Physical oceanography during HEINCKE cruise HE450" ; + schema:publisher _:b12356047 ; + schema:url ; + schema:citation ; + schema:creator _:b12356036 , + _:b5517064 , + . + rdf:type schema:CreativeWork , + schema:Dataset ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b8145073 ; + schema:sourceOrganization ; + schema:spatialCoverage _:b8145072 ; + schema:temporalCoverage "2015-08-25T00:10:00/2015-09-08T23:50:18" ; + schema:variableMeasured _:b8145071 , + _:b8145068 , + _:b8145065 , + _:b8145062 , + _:b8145061 ; + schema:workExample ; + schema:datePublished "2015"^^schema:Date , + "2015-12-03"^^schema:Date ; + schema:description "This dataset is about: Station list and links to master tracks in different resolutions of HEINCKE cruise HE450, Troms\u00F8 - Troms\u00F8, 2015-08-25 - 2015-09-08." ; + schema:distribution _:b8145064 , + _:b8145067 ; 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Tully cruise STNP-9715 (3144 kByte, zipped)" ; + schema:url . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier ; + schema:name "Gallery of sea-bed photographs from site Plane Grotte \u00E0 Peres, plot P6E" ; + schema:url . + rdf:type schema:CreativeWork ; + schema:datePublished "2021"^^schema:Date ; + schema:identifier "ftp://ftp.bsrn.awi.de/psu/psu0320.dat.gz" , + ; + schema:name "BSRN Station-to-archive file for station Rock Springs (2020-03)" ; + schema:url ; + schema:creator . + rdf:type schema:WebPage , + schema:CreativeWork ; + schema:identifier ; + schema:name "Sample requests of sediment core PS63/068-1" ; + schema:url . + rdf:type schema:PublicationIssue , + schema:CreativeWork ; + schema:isBasedOn ; + schema:isPartOf _:b12188638 , + _:b14556867 , + _:b5518484 ; + schema:issueNumber "210" ; + schema:pagination "19-29" ; + schema:datePublished "2019"^^schema:Date ; + schema:identifier "https://doi.org/10.1016/j.aquatox.2019.02.012" , + ; + schema:name "The impact of ocean acidification on the gonads of three key Antarctic benthic macroinvertebrates" ; + schema:url ; + schema:creator _:b12188557 , + _:b12188601 , + _:b5518491 , + _:b5518480 , + , + , + _:b14556863 , + _:b14556866 . + rdf:type schema:CreativeWork ; + schema:datePublished "2013"^^schema:Date ; + schema:identifier "ftp://ftp.bsrn.awi.de/mnm/mnm1212.dat.gz" , + ; + schema:name "BSRN Station-to-archive file for station Minamitorishima (2012-12)" ; + schema:url ; + schema:creator _:b5518515 , + _:b6771130 , + _:b8562883 . + rdf:type schema:CreativeWork , + schema:Dataset ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:isPartOf ; + schema:size _:b5518577 ; + schema:spatialCoverage _:b5518576 ; + schema:temporalCoverage "2013-11-02T00:00:00/2013-11-06T00:00:00" ; + schema:variableMeasured _:b5518574 , + _:b5518572 , + _:b5518566 , + _:b5518563 , + _:b5518580 , + _:b5518581 , + _:b5518578 , + _:b5518579 ; + schema:workExample ; + schema:datePublished "2018-10-10"^^schema:Date , + "2018"^^schema:Date ; + schema:description "This dataset is about: Georeferenced photographs of benthic photoquadrats acquired along transects from Heron Reef flat and slope areas (2013-11). Please consult parent dataset @ https://doi.org/10.1594/PANGAEA.894801 for more information." ; + schema:distribution _:b5518564 , + _:b5518573 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.895160" , + ; + schema:includedInDataCatalog _:b5518562 ; + schema:license ; + schema:name "Georeferenced photographs of benthic photoquadrats acquired along transects from Heron Reef flat and slope areas (2013-11)" ; + schema:publisher _:b5518571 ; + schema:url ; + schema:citation , + , + , + ; + schema:creator , + , + , + . + rdf:type schema:WebPage , + schema:CreativeWork ; + schema:identifier ; + schema:name "Gallery of photographs from the Heron Reef (2013-11)" ; + schema:url . + rdf:type schema:CreativeWork ; + schema:datePublished "2010"^^schema:Date ; + schema:identifier ; + schema:name "BSRN Station-to-archive file for station South Pole (2010-01)" ; + schema:url ; + schema:creator _:b5518638 . + rdf:type schema:WebPage , + schema:CreativeWork ; + schema:identifier , + "https://www.jamstec.go.jp/sio7/j-cores.data/315/C0001I.2010-08-31/" ; 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+ schema:url . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:abstract "The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides raw validated data of continuous pH measurements made during 2013 expedition with a Satlantic SeaFET instrument that was connected to the flowthrough system. Data calibration was performed according to Bresnahan et al. (2014) (using spectrophotometric pH measurements on discrete samples (Clayton and Byrne 1993). pH_internal values were taken to calibrate the data (rather than pH_external) because of the better calibration coefficient (there was no trend associated with it). The equations of Clayton and Byrne (1993) was used to compute pH from the measured absorbance values at the temperature of measurement. The data was converted to in situ temperature using the \u201CCO2-sys\u201D program (van Heusen et al. 2011)." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b11378909 ; + schema:datePublished "2016-06-23"^^schema:Date , + "2016"^^schema:Date ; + schema:description "The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides raw validated data of continuous pH measurements made during 2013 expedition with a Satlantic SeaFET instrument that was connected to the flowthrough system. Data calibration was performed according to Bresnahan et al. (2014) (using spectrophotometric pH measurements on discrete samples (Clayton and Byrne 1993). pH_internal values were taken to calibrate the data (rather than pH_external) because of the better calibration coefficient (there was no trend associated with it). [\u2026]" ; + schema:distribution _:b11378903 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.861908" , + ; + schema:includedInDataCatalog _:b11378871 ; + schema:license ; + schema:name "[RAW VALIDATED DATA] Properties of seawater (pH total scale) from a Satlantic SeaFET instrument mounted on the continuous surface water sampling system during the Tara Oceans expedition 2009-2013" ; + schema:publisher _:b11378908 ; + schema:url ; + schema:citation , + _:b11378859 , + , + , + ; + schema:creator , + _:b5520977 , + _:b5520962 , + _:b5520924 , + _:b11378912 , + _:b11378900 , + _:b11378877 . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:abstract "The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of evironmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data publication provides raw validated data files containing measurements from the Continuous Surface Sampling System [CSSS]. Water was pumped at the front of the vessel from ~2m depth, then de-bubbled and circulated to a Sea-Bird TSG temperature and conductivity sensor. Systems maintenance (instrument cleaning, flushing) was done approximately once a week and in port between successive legs. All data were stamped with a GPS." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b14510966 ; + schema:datePublished "2014-10-06"^^schema:Date , + "2014"^^schema:Date ; + schema:description "The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of evironmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data publication provides raw validated data files containing measurements from the Continuous Surface Sampling System [CSSS]. Water was pumped at the front of the vessel from ~2m depth, then de-bubbled and circulated to a Sea-Bird TSG temperature and conductivity sensor. Systems maintenance (instrument cleaning, flushing) was done approximately once a week and in port between successive legs. All data were stamped with a GPS." ; + schema:distribution _:b14510980 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.836320" , + ; + schema:includedInDataCatalog _:b14510940 ; + schema:license ; + schema:name "[RAW VALIDATED DATA] Properties of seawater from a Sea-Bird TSG temperature and conductivity sensor mounted on the continuous surface water sampling system during the Tara Oceans expedition 2009-2013" ; + schema:publisher _:b14510941 ; + schema:url ; + schema:citation , + , + _:b14510935 , + ; + schema:creator , + _:b5520930 , + _:b5520916 , + _:b5520907 , + _:b14510964 , + _:b14510949 , + _:b14510957 . + rdf:type schema:CreativeWork , + schema:Dataset ; + schema:abstract "The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides raw validated data of continuous measurements made with a FRRF instrument, operating in a flow-through mode during the 2009-2012 part of the expedition. It operates by exciting chlorophyll fluorescence using a series of short flashes of controlled energy and time intervals (Kolber et al, 1998). The fluorescence transients produced by this excitation signal were analysed in real-time to provide estimates of abundance of photosynthetic pigments, the photosynthetic yields (Fv/Fm), the functional absorption cross section (a proxy for efficiency of photosynthetic energy acquisition), the kinetics of photosynthetic electron transport between Photosystem II and Photosystem I, and the size of the PQ pool. These parameters were measured at excitation wavelength of 445 nm, 470nm, 505 nm, and 535 nm, allowing to assess the presence and the photosynthetic performance of different phytoplankton taxa based on the spectral composition of their light harvesting pigments. The FRRF-derived photosynthetic characteristics were used to calculate the initial slope, the half saturation, and the maximum level of Photosynthesis vs Irradiance relationship. FRRF data were acquired continuously, at 1-minute time intervals." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b11834534 ; + schema:datePublished "2016-06-23"^^schema:Date , + "2016"^^schema:Date ; + schema:description "The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides raw validated data of continuous measurements made with a FRRF instrument, operating in a flow-through mode during the 2009-2012 part of the expedition. It operates by exciting chlorophyll fluorescence using a series of short flashes of controlled energy and time intervals (Kolber et al, 1998). [\u2026]" ; + schema:distribution _:b11834546 ; + schema:identifier , + "https://doi.org/10.1594/PANGAEA.861923" ; + schema:includedInDataCatalog _:b11834549 ; + schema:license ; + schema:name "[RAW VALIDATED DATA] Properties of seawater and particulate matter from a FRRF instrument, operating in a flow-through mode on the continuous surface water sampling system during the Tara Oceans expedition 2009-2013" ; + schema:publisher _:b11834547 ; + schema:url ; + schema:citation , + , + _:b11834514 ; + schema:creator _:b5520915 , + _:b5520953 , + _:b5520967 , + _:b11834516 , + _:b11834541 , + _:b11834531 . + rdf:type schema:CreativeWork , + schema:Dataset ; + schema:abstract "The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides raw validated data of continuous measurements made with a Biospherical Instrument Inc. QCR-2150 surface PAR sensor mounted on a sensor mast at the stern of the ship (ca. 8m above deck) and time synchronized with the CTD recording unit. The sensor consists of a cosine collector and was also utilized to correct the CTD PAR sensor data. The dark was computed as the lowest 0.01% voltage of the signal that was found to be very stable (0.00965V) for all the legs except for the 2nd leg of the polar circle where there was no complete night (the manufacturer dark was 0.0097V). The manufacturer calibration slope from 12/ 2012 was used to transform the data to scientific units." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b9103195 ; + schema:datePublished "2016-06-23"^^schema:Date , + "2016"^^schema:Date ; + schema:description "The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides raw validated data of continuous measurements made with a Biospherical Instrument Inc. QCR-2150 surface PAR sensor mounted on a sensor mast at the stern of the ship (ca. 8m above deck) and time synchronized with the CTD recording unit. The sensor consists of a cosine collector and was also utilized to correct the CTD PAR sensor data. The dark was computed as the lowest 0.01% voltage of the signal that was found to be very stable (0.00965V) for all the legs except for the 2nd leg of the polar circle where there was no complete night (the manufacturer dark was 0.0097V). [\u2026]" ; + schema:distribution _:b9103210 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.861917" , + ; + schema:includedInDataCatalog _:b9103211 ; + schema:license ; + schema:name "[RAW VALIDATED DATA] Photosynthetically Active Radiation (PAR) measurements from a Biospherical Instrument Inc. QCR-2150 surface PAR sensor mounted on a sensor mast during the Tara Oceans expedition 2009-2013" ; + schema:publisher _:b9103185 ; + schema:url ; + schema:citation , + _:b9103172 ; + schema:creator , + _:b5520941 , + _:b5520978 , + _:b5520987 , + _:b9103171 , + _:b9103190 , + _:b9103196 . + rdf:type schema:CreativeWork , + schema:Dataset ; + schema:abstract "The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of environmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data publication provides permanent links to original and updated versions of validated data files containing navigation and meteorological data collected during the entire Tara Oceans Expedition (2009-2013)." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b7335208 ; + schema:datePublished "2014-10-06"^^schema:Date , + "2014"^^schema:Date ; + schema:description "The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of environmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data publication provides permanent links to original and updated versions of validated data files containing navigation and meteorological data collected during the entire Tara Oceans Expedition (2009-2013)." ; + schema:distribution _:b7335173 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.836312" , + ; + schema:includedInDataCatalog _:b7335178 ; + schema:license ; + schema:name "[RAW VALIDATED DATA] Navigation and meteorological data during the Tara Oceans expedition 2009-2013" ; + schema:publisher _:b7335197 ; + schema:url ; + schema:citation , + _:b7335174 , + ; + schema:creator _:b7335171 , + _:b7335183 , + _:b7335202 , + _:b5520920 , + _:b5520926 , + _:b5520943 . + rdf:type schema:CreativeWork , + schema:Dataset ; + schema:abstract "The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides raw validated data of continuous measurements made with a WETLabs Eco-FL sensor mounted on the flowthrough system between June 4th, 2011 and March 30th, 2012. Data was recorded approximately every 10s. Two issues affected the data: 1. Periods when the water 0.2\u00B5m filtered water were used as blanks and 2. Periods where fluorescence was affected by non-photochemical quenching (NPQ, chlorophyll fluorescence is reduced when cells are exposed to light, e.g. Falkowski and Raven, 1997). Median data and their standard deviation were binned to 5min bins with period of light/dark indicated by an added variable (so that NPQ affected data could be neglected if the user so chooses). Data was first calibrated using HPLC data collected on the Tara (there were 36 data within 30min of each other). Fewer were available when there was no evident NPQ and the resulting scale factor was 0.0106 mg Chl m-3/count. To increase the calibration match-ups we used the AC-S data which provided a robust estimate of Chlorophyll (e.g. Boss et al., 2013). Scale factor computed over a much larger range of values than HPLC was 0.0088 mg Chl m-3/count (compared to 0.0079 mg Chl m-3/count based on manufacturer). In the archived data the fluorometer data is merged with the TSG, raw data is provided as well as manufacturer calibration constants, blank computed from filtered measurements and chlorophyll calibrated using the AC-S. 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Periods when the water 0.2\u00B5m filtered water were used as blanks and 2. Periods where fluorescence was affected by non-photochemical quenching (NPQ, chlorophyll fluorescence is reduced when cells are exposed to light, e.g. Falkowski and Raven, 1997). 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Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides raw validated data of continuous measurements made with an Aquatic Laser Fluorescence Analyzer (ALFA) (Chekalyuk et al., 2014), connected in-line to the TARA flow through system during 2013. The ALFA instrument provides dual-wavelength excitation (405 and 514 nm) of laser-stimulated emission (LSE) for spectral and temporal analysis. It offers in vivo fluorescence assessments of phytoplankton pigments, biomass, photosynthetic yield (Fv/Fm), phycobiliprotein (PBP)-containing phytoplankton groups, and chromophoric dissolved organic matter (CDOM) (Chekalyuk and Hafez, 2008; 2013A). Spectral deconvolution (SDC) is used to assess the overlapped spectral bands of aquatic fluorescence constituents and water Raman scattering (R). 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It contains 44,929 polygon features, covering 101,583 km\u00B2 of land used by the global mining industry, including large-scale and artisanal and small-scale mining. The polygons cover all ground features related to mining, .e.g open cuts, tailing dams, waste rock dumps, water ponds, processing infrastructure, and other land cover types related to the mining activities. The data was derived using a similar methodology as the first version by visual interpretation of satellite images. The study area was limited to a 10 km buffer around the 34,820 mining coordinates reported in the S&P metals and mining database. We digitalized the mining areas using the 2019 Sentinel-2 cloudless mosaic with 10 m spatial resolution (https://s2maps.eu by EOX IT Services GmbH - Contains modified Copernicus Sentinel data 2019). We also consulted Google Satellite and Microsoft Bing Imagery, but only as additional information to help identify land cover types linked to the mining activities. The main data set consists of a GeoPackage (GPKG) file, including the following variables: ISO3_CODE, COUNTRY_NAME, AREA in squared kilometres, FID with the feature ID, and geom in geographical coordinates WGS84. The summary of the mining area per country is available in comma-separated values (CSV) file, including the following variables: ISO3_CODE, COUNTRY_NAME, AREA in squared kilometres, and N_FEATURES number of mapped features. Grid data sets with the mining area per cell were derived from the polygons. The grid data is available at 30 arc-second resolution (approximately 1x1 km at the equator), 5 arc-minute (approximately 10x10 km at the equator), and 30 arc-minute resolution (approximately 55x55 km at the equator). We performed an independent validation of the mining data set using control points. For that, we draw 1,000 random samples stratified between two classes: mine and no-mine. The control points are also available as a GPKG file, including the variables: MAPPED, REFERENCE, FID with the feature ID, and geom in geographical coordinates WGS84. The overall accuracy calculated from the control points was 88.3%, Kappa 0.77, F1 score 0.87, producer's accuracy of class mine 78.9 % and user's accuracy of class mine 97.2 %." ; + schema:conditionsOfAccess "unrestricted" ; + schema:funder ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:isBasedOn ; + schema:size _:b5544036 ; + schema:variableMeasured _:b5544037 , + _:b5544034 , + _:b5544032 , + _:b5544029 ; + schema:datePublished "2022"^^schema:Date , + "2022-03-14"^^schema:Date ; + schema:description "This dataset updates the global-scale mining polygons (Version 1) available from https://doi.org/10.1594/PANGAEA.910894. It contains 44,929 polygon features, covering 101,583 km\u00B2 of land used by the global mining industry, including large-scale and artisanal and small-scale mining. The polygons cover all ground features related to mining, .e.g open cuts, tailing dams, waste rock dumps, water ponds, processing infrastructure, and other land cover types related to the mining activities. The data was derived using a similar methodology as the first version by visual interpretation of satellite images. The study area was limited to a 10 km buffer around the 34,820 mining coordinates reported in the S&P metals and mining database. We digitalized the mining areas using the 2019 Sentinel-2 cloudless mosaic with 10 m spatial resolution (https://s2maps.eu by EOX IT Services GmbH - Contains modified Copernicus Sentinel data 2019). [\u2026]" ; + schema:distribution _:b5544033 , + _:b5544026 ; + schema:identifier , + "https://doi.org/10.1594/PANGAEA.942325" ; + schema:includedInDataCatalog _:b5544025 ; + schema:keywords "coal; Land-cover; land-use; metal ores; minerals; Mining; raw material extraction" ; + schema:license ; + schema:name "Global-scale mining polygons (Version 2)" ; + schema:publisher _:b5544030 ; + schema:url ; + schema:creator _:b5544031 , + _:b5544035 , + , + , + , + , + , + , + , + _:b10633887 , + _:b10633888 . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:abstract "This data set provides spatially explicit estimates of the area directly used for surface mining on a global scale. It contains more than 21,000 polygons of activities related to mining, mainly of coal and metal ores. Several data sources were compiled to identify the approximate location of mines active at any time between the years 2000 to 2017. This data set does not cover all existing mining locations across the globe. The polygons were delineated by experts using Sentinel-2 cloudless (https://s2maps.eu by EOX IT Services GmbH (contains modified Copernicus Sentinel data 2017 & 2018)) and very high-resolution satellite images available from Google Satellite and Bing Imagery. The derived polygons cover the direct land used by mining activities, including open cuts, tailing dams, waste rock dumps, water ponds, and processing infrastructure. The main data set consists of a GeoPackage (GPKG) file, including the following variables: ISO3_CODE, COUNTRY_NAME, AREA in squared kilometres, FID with the feature ID, and geom in geographical coordinates WGS84. The summary of the mining area per country is available in comma-separated values (CSV) file, including the following variables: ISO3_CODE, COUNTRY_NAME, AREA in squared kilometers, and N_FEATURES number of mapped features. Grid data sets with the mining area per cell were derived from the polygons. The grid data is available at 30 arc-second resolution (approximately 1x1 km at the equator), 5 arc-minute (approximately 10x10 km at the equator), and 30 arc-minute resolution (approximately 55x55 km at the equator). We performed an independent validation of the mining data set using control points. For that, we draw a 1,000 random samples stratified between two classes: mine and no-mine. The control points are also available as a GPKG file, including the variables: MAPPED, REFERENCE, FID with the feature ID, and geom in geographical coordinates WGS84. The overall accuracy calculated from the control points was 88.4%, other accuracy metrics are shown below. \n\nConfusion Matrix and Statistics\n\n Reference\nPrediction Mine No-mine\n Mine 394 106\n No-mine 10 490\n \nAccuracy : 0.884\n95% CI : (0.8625, 0.9032)\nNo Information Rate : 0.596\nP-Value [Acc > NIR] : < 2.2e-16\n \nKappa : 0.768\n \nMcnemar's Test P-Value : < 2.2e-16\n \nSensitivity : 0.9752\nSpecificity : 0.8221\nPos Pred Value : 0.7880\nNeg Pred Value : 0.9800\nPrecision : 0.7880\nRecall : 0.9752\nF1 : 0.8717\nPrevalence : 0.4040\nDetection Rate : 0.3940\nDetection Prevalence : 0.5000\nBalanced Accuracy : 0.8987\n\nThis work was supported by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme grant number 725525 FINEPRINT project (https://www.fineprint.global/)." ; + schema:conditionsOfAccess "unrestricted" ; + schema:funder ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b10633890 ; + schema:datePublished "2020-01-17"^^schema:Date , + "2020"^^schema:Date ; + schema:description "This data set provides spatially explicit estimates of the area directly used for surface mining on a global scale. It contains more than 21,000 polygons of activities related to mining, mainly of coal and metal ores. Several data sources were compiled to identify the approximate location of mines active at any time between the years 2000 to 2017. This data set does not cover all existing mining locations across the globe. The polygons were delineated by experts using Sentinel-2 cloudless (https://s2maps.eu by EOX IT Services GmbH (contains modified Copernicus Sentinel data 2017 & 2018)) and very high-resolution satellite images available from Google Satellite and Bing Imagery. The derived polygons cover the direct land used by mining activities, including open cuts, tailing dams, waste rock dumps, water ponds, and processing infrastructure. The main data set consists of a GeoPackage (GPKG) file, including the following variables: ISO3_CODE, COUNTRY_NAME, AREA in squared kilometres, FID with the feature ID, and geom in geographical coordinates WGS84. The summary of the mining area per country is available in comma-separated values (CSV) file, including the following variables: ISO3_CODE, COUNTRY_NAME, AREA in squared kilometers, and N_FEATURES number of mapped features. Grid data sets with the mining area per cell were derived from the polygons. The grid data is available at 30 arc-second resolution (approximately 1x1 km at the equator), 5 arc-minute (approximately 10x10 km at the equator), and 30 arc-minute resolution (approximately 55x55 km at the equator). We performed an independent validation of the mining data set using control points. For that, we draw a 1,000 random samples stratified between two classes: mine and no-mine. The control points are also available as a GPKG file, including the variables: MAPPED, REFERENCE, FID with the feature ID, and geom in geographical coordinates WGS84. The overall accuracy calculated from the control points was 88.4%, other accuracy metrics are shown below. 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MERIAN cruise MSM36 between 18.02.2014 and 17.03.2014 at the Moroccan continental margins. The cruise carried out multidisciplinary research on the long-term development of cold-water coral ecosystems in selected areas along the Moroccan continental margins in the Mediterranean Sea and in the Atlantic Ocean. The key instrument to be used during this expedition was the Bremen Deep Sea Drill Rig MeBo. CI Citation: Paul Wintersteller (seafloor-imaging@marum.de) as responsible party for bathymetry post-processing and its products. \nDescription of processed data sources: \nDuring the RV MARIA S. MERIAN cruise MSM36 the moon pooled Kongsberg EM1002 shallow multi-beam echo-sounder was utilized. The EM1002 uses a nominal sounding frequency of 95 kHz. 111 beams are formed for each ping while the seafloor is detected using amplitude and phase information for each beam sounding. For further information consult http://www.tdi-bi.com/downloads/EM1002_Product_specification.pdf. The EM1002 delivered in general reliable data, problems during the acquisition only occurred during bad weather conditions. Responsible person during this cruise / PI: Stefanie Gaide (s.gaide@uni-bremen.de). \nDescription of data processing: \nPostprocessing and products were conducted by the Seafloor-Imaging & Mapping group of MARUM/FB5, responsible person: Paul Wintersteller (seafloor-imaging@marum.de). The open source software MB-System suite (Caress, D.W., and D.N. Chayes, MB-System Version 5.5, open source software distributed from the MBARI and L-DEO web sites, 2000-2012.) was utilized for this purpose. A tide correction was applied, based on the Oregon State University (OSU) tidal prediction software (OTPS) that is retrievable through MB-System. CTD measurements taken during the MSM36 were sufficient to represent the changes in the sound velocity throughout the study area. Further tide, pitch and heave corrections were not applied for the MSM36 data. But a roll correction of -0.25\u00B0 was applied (mbset). Bathymetric data has been manually cleaned for existing artefacts with mbeditviz. NetCDF (GMT) grids of the product and the statistics were created using mbgrid. No total propagated uncertainty (TPU) has been calculated to gather vertical or horizontal accuracy. The currently published bathymetric grid of the cruise has a resolution of 125 m. A higher resolution is, at least partly, achievable. A higher resolution is, at least partly, achievable. The grid extended with _num represents a raster dataset with the statistical number of beams/depths taken into account to create the depth of the cell. The extended _sd -grid contains the standard deviation for each cell. All grids produced are retrievable through the PANGAEA database (www.pangaea.de). \nChief Scientist: D. Hebbeln \nCR: https://www.tib.eu/de/suchen/id/awi%3Adoi~10.2312%252Fcr_msm36/ \nCSR: http://www.bsh.de/aktdat/dod/fahrtergebnis/2014/20140066.htm" ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:isBasedOn ; + schema:size _:b5576925 ; + schema:sourceOrganization ; + schema:spatialCoverage _:b5576927 ; + schema:variableMeasured _:b5576917 , + _:b5576922 , + _:b5576932 , + _:b5576936 ; + schema:datePublished "2018-08-22"^^schema:Date , + "2018"^^schema:Date ; + schema:description "Bathymetry based on data recorded during RV MARIA S. MERIAN cruise MSM36 between 18.02.2014 and 17.03.2014 at the Moroccan continental margins. The cruise carried out multidisciplinary research on the long-term development of cold-water coral ecosystems in selected areas along the Moroccan continental margins in the Mediterranean Sea and in the Atlantic Ocean. The key instrument to be used during this expedition was the Bremen Deep Sea Drill Rig MeBo. CI Citation: Paul Wintersteller (seafloor-imaging@marum.de) as responsible party for bathymetry post-processing and its products. [\u2026]" ; + schema:distribution _:b5576920 , + _:b5576929 ; + schema:identifier , + "https://doi.org/10.1594/PANGAEA.893181" ; + schema:includedInDataCatalog _:b5576919 ; + schema:license ; + schema:name "Gridded EM1002 multibeam-echosounder bathymetry of cruise MSM36 - Alboran Sea" ; + schema:publisher _:b5576916 ; + schema:url ; + schema:citation ns5:cr_msm36 ; + schema:creator , + . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:abstract "Multibeam echosounder (MBES) data recorded during RV MARIA S. MERIAN cruise MSM36 between 18.02.2014 and 17.03.2014 at the Moroccan continental margins. The cruise carried out multidisciplinary research on the long-term development of cold-water coral ecosystems in selected areas along the Moroccan continental margins in the Mediterranean Sea and in the Atlantic Ocean. The key instrument to be used during this expedition was the Bremen Deep Sea Drill Rig MeBo. CI Citation: Paul Wintersteller (seafloor-imaging@marum.de) as responsible party for bathymetry raw data ingest and approval. \n\nDescription of data source: \nDuring the RV MARIA S. MERIAN cruise MSM36 the moon pooled Kongsberg EM1002 shallow multibeam echosounder was utilized. The EM1002 uses a nominal sounding frequency of 95 kHz. 111 beams with an acoustical footprint of 2\u00B0(Tx)/2\u00B0(Rx) are formed for each ping. For further information consult http://www.tdi-bi.com/downloads/EM1002_Product_specification.pdf. During the cruise the swath width was set to 120\u00B0 and the survey speed was kept at around 8 knots. Both MBES devices (EM1002 and EM122) were used for the seabed mapping in the Mediterranean Sea. In the Gulf of C\u00E1diz, the seabed mapping was only conducted with the EM122 as the water depth was too deep for the EM1002. In general, the EM1002 delivered reliable data, problems during the acquisition only occurred during bad weather conditions. Two different subsets of hydroacoustic data were acquired during this cruise: A western Mediterranean Sea dataset covering the EMCP (East Melilla Cold-Water Coral Province) and the WMCP (West Melilla Cold-Water Coral Province) in the Alboran Sea and an Atlantic dataset covering the MACP (Moroccan Atlantic Cold-Water Coral Province) in the Gulf of C\u00E1diz. Responsible person during this cruise / PI: Stefanie Gaide (s.gaide@uni-bremen.de). \n\nChief Scientist: D. 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Surface net primary production rates together with total and species-specific planktonic foraminiferal flux rates were highest during the SE monsoon-induced coastal upwelling period from July to October, with three species Globigerina bulloides, Neogloboquadrina pachyderma dex., and Globigerinita glutinata contributing to 40% of the total foraminiferal flux. Shell stable oxygen isotopes (d18O) and Mg/Ca data of Globigerinoides ruber sensu stricto (s.s.), G. ruber sensu lato (s.l.), Neogloboquadrina dutertrei, Pulleniatina obliquiloculata, and Globorotalia menardii in the sediment trap time series recorded surface and subsurface conditions. We infer habitats of 0-30 m for G. ruber at the mixed layer depth, 60-80 m (60-90 m) for P. obliquiloculata (N. dutertrei) at the upper thermocline depth, and 90-110 m (100-150 m) for G. menardii in the 355-500 mm (>500 \u00B5m) size fraction corresponding to the (lower) thermocline depth in the study area. Shell Mg/Ca ratio of G. ruber (s.l. and s.s.) reveals an exponential relationship with temperature that agrees with published relationships particularly with the Anand et al. (2003) equations. Flux-weighted foraminiferal data in sediment trap are consistent with average values in surface sediment samples off SW Indonesia. 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Surface net primary production rates together with total and species-specific planktonic foraminiferal flux rates were highest during the SE monsoon-induced coastal upwelling period from July to October, with three species Globigerina bulloides, Neogloboquadrina pachyderma dex., and Globigerinita glutinata contributing to 40% of the total foraminiferal flux. Shell stable oxygen isotopes (d18O) and Mg/Ca data of Globigerinoides ruber sensu stricto (s.s.), G. ruber sensu lato (s.l.), Neogloboquadrina dutertrei, Pulleniatina obliquiloculata, and Globorotalia menardii in the sediment trap time series recorded surface and subsurface conditions. 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Gould cruise 33LG20130213 (186 kByte, zipped)" ; + schema:url . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier ; + schema:name "Thumbnail overview of linescan images from ODP Hole 199-1220C" ; + schema:url . + rdf:type schema:CreativeWork ; + schema:datePublished "2021"^^schema:Date ; + schema:identifier ; + schema:name "BSRN Station-to-archive file for Concordia Station (2020-10)" ; + schema:url ; + schema:creator . +ns9:bg-12-4209-2015 rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isBasedOn , + ; + schema:isPartOf _:b9792960 , + _:b12084756 , + _:b5594017 , + _:b9613850 , + _:b9482336 , + _:b7688412 ; + schema:issueNumber "12(14)" ; + schema:pagination "4209-4220" ; + schema:datePublished "2015"^^schema:Date ; + schema:identifier "https://doi.org/10.5194/bg-12-4209-2015" , + ns9:bg-12-4209-2015 ; + schema:name "Impact of seawater carbonate chemistry on the calcification of marine bivalves" ; + schema:url ns9:bg-12-4209-2015 ; + schema:creator _:b5594011 , + _:b9792965 , + _:b12084755 , + _:b7688440 , + , + , + , + _:b9613854 , + _:b9482347 . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:abstract "Bivalve calcification, particularly of the early larval stages, is highly sensitive to the change in ocean carbonate chemistry resulting from atmospheric CO2 uptake. Earlier studies suggested that declining seawater [CO32-] and thereby lowered carbonate saturation affect shell production. However, disturbances of physiological processes such as acid-base regulation by adverse seawater pCO2 and pH can affect calcification in a secondary fashion. In order to determine the exact carbonate system component by which growth and calcification are affected it is necessary to utilize more complex carbonate chemistry manipulations. As single factors, pCO2 had no effects and [HCO3-] and pH had only limited effects on shell growth, while lowered [CO32-] strongly impacted calcification. Dissolved inorganic carbon (CT) limiting conditions led to strong reductions in calcification, despite high [CO32-], indicating that [HCO3-] rather than [CO32-] is the inorganic carbon source utilized for calcification by mytilid mussels. However, as the ratio [HCO3-] / [H+] is linearly correlated with [CO32-] it is not possible to differentiate between these under natural seawater conditions. An equivalent of about 80 \u00B5mol kg-1 [CO32-] is required to saturate inorganic carbon supply for calcification in bivalves. Below this threshold biomineralization rates rapidly decline. A comparison of literature data available for larvae and juvenile mussels and oysters originating from habitats differing substantially with respect to prevailing carbonate chemistry conditions revealed similar response curves. This suggests that the mechanisms which determine sensitivity of calcification in this group are highly conserved. The higher sensitivity of larval calcification seems to primarily result from the much higher relative calcification rates in early life stages. In order to reveal and understand the mechanisms that limit or facilitate adaptation to future ocean acidification, it is necessary to better understand the physiological processes and their underlying genetics that govern inorganic carbon assimilation for calcification." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b9613855 ; + schema:datePublished "2016"^^schema:Date , + "2016-01-13"^^schema:Date ; + schema:description "Bivalve calcification, particularly of the early larval stages, is highly sensitive to the change in ocean carbonate chemistry resulting from atmospheric CO2 uptake. Earlier studies suggested that declining seawater [CO32-] and thereby lowered carbonate saturation affect shell production. However, disturbances of physiological processes such as acid-base regulation by adverse seawater pCO2 and pH can affect calcification in a secondary fashion. In order to determine the exact carbonate system component by which growth and calcification are affected it is necessary to utilize more complex carbonate chemistry manipulations. As single factors, pCO2 had no effects and [HCO3-] and pH had only limited effects on shell growth, while lowered [CO32-] strongly impacted calcification. 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This dataset contains a survey about 120 km west of the coast of the Bahamas. The approximate average depth of the entire dataset is around 600m.\nThe data are archived at the Federal Maritime and Hydrographic Agency of Germany (Bundesamt f\u00FCr Seeschifffahrt und Hydrographie, BSH) and provided to PANGAEA database for data curation and publication. Ancillary sound velocity profiles (SVP) files from the cruise are not archived at the BSH, thus no SVP files are added to this dataset. However, data analysis of the multibeam raw data revealed that SVP has been changed several times during the survey.\nThis publication is conducted within the efforts of the German Marine Research Alliance in the core area \"Data management and Digitalization\" (Deutsche Allianz Meeresforschung, DAM).\nData are unprocessed and therefore contains incorrect depth measurements (artifacts) without further processing. 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Data was recorded on 19 days between 2013-04-01 and 2013-04-19. This dataset contains a survey about 120 km west of the coast of the Bahamas. The approximate average depth of the entire dataset is around 600m. 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Gould cruise L023SFC_PRT (474 kByte, zipped)" ; + schema:url . + rdf:type schema:WebPage , + schema:CreativeWork ; + schema:identifier ; + schema:name "Original visual core description from ODP Hole 167-1011D" ; + schema:url . + rdf:type schema:CreativeWork ; + schema:datePublished "2013"^^schema:Date ; + schema:identifier "ftp://ftp.bsrn.awi.de/tam/tam0408.dat.gz" , + ; + schema:name "BSRN Station-to-archive file for station Tamanrasset (2008-04)" ; + schema:url ; + schema:creator _:b11629344 , + _:b9020375 , + _:b12192625 , + _:b11510760 , + _:b5618687 . + rdf:type schema:CreativeWork ; + schema:datePublished "2015"^^schema:Date ; + schema:identifier "ftp://ftp.bsrn.awi.de/man/man0511.dat.gz" , + ; + schema:name "BSRN Station-to-archive file for station Momote (2011-05)" ; + schema:url ; + schema:creator _:b11005147 , + _:b5618850 . + rdf:type schema:WebPage , + schema:CreativeWork ; + schema:identifier ; + schema:name "Supplementary material to: Microbial communities and organic matter composition in surface and subsurface sediments of the Helgoland mud area, North Sea" ; + schema:url . + rdf:type schema:PublicationIssue , + schema:CreativeWork ; + schema:isBasedOn ; + schema:isPartOf _:b10629916 , + _:b9649285 , + _:b5619491 , + _:b14535824 ; + schema:issueNumber "6" ; + schema:datePublished "2015"^^schema:Date ; + schema:identifier "https://doi.org/10.3389/fmicb.2015.01290" , + ; + schema:name "Microbial communities and organic matter composition in surface and subsurface sediments of the Helgoland mud area, North Sea" ; + schema:url ; + schema:creator , + _:b14535809 , + _:b14535817 , + , + _:b10629936 , + _:b10629894 , + , + , + _:b5619494 , + _:b5619497 , + _:b9649313 , + _:b9649290 , + . + rdf:type schema:WebPage , + schema:CreativeWork ; + schema:identifier ; + schema:name "Documentation and data in original SOCAT V3 format of Gulf Challenger cruise UNH_CO2_20040730 (135 kByte, zipped)" ; + schema:url . +ns9:bg-13-1423-2016 rdf:type schema:PublicationIssue , + schema:CreativeWork ; + schema:isBasedOn ; + schema:isPartOf _:b5619763 ; + schema:issueNumber "13(5)" ; + schema:pagination "1423-1437" ; + schema:datePublished "2016"^^schema:Date ; + schema:identifier ns9:bg-13-1423-2016 ; + schema:name "Pollen-based paleoenvironmental and paleoclimatic change at Lake Ohrid (south-eastern Europe) during the past 500\u202Fka" ; + schema:url ns9:bg-13-1423-2016 ; + schema:creator _:b5619777 , + _:b5619731 , + _:b5619764 , + , + , + , + , + , + , + , + , + , + , + , + , + . + rdf:type schema:CreativeWork , + schema:Dataset ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b5619850 ; + schema:spatialCoverage _:b5619809 ; + schema:variableMeasured _:b5619818 , + _:b5619834 , + _:b5619836 , + _:b5619837 , + _:b5619791 , + _:b5619793 , + _:b5619842 , + _:b5619843 ; + schema:datePublished "2018"^^schema:Date , + "2018-05-29"^^schema:Date ; + schema:description "This dataset is about: Geochemistry of Sidney_core1 peat core." ; + schema:distribution _:b5619828 , + _:b5619803 ; + schema:identifier , + "https://doi.org/10.1594/PANGAEA.890487" ; + schema:includedInDataCatalog _:b5619798 ; + schema:license ; + schema:name "Geochemistry of Sidney_core1 peat core" ; + schema:publisher _:b5619851 ; + schema:url ; + schema:citation , + , + ; + schema:creator . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b10223241 ; + schema:spatialCoverage _:b10223243 ; + schema:variableMeasured _:b10223245 , + _:b10223285 , + _:b10223276 , + _:b10223265 , + _:b10223270 , + _:b10223302 , + _:b10223301 ; + schema:datePublished "2018"^^schema:Date , + "2018-05-29"^^schema:Date ; + schema:description "This dataset is about: Age determination of Sidney_core1 peat core." ; + schema:distribution _:b10223280 , + _:b10223298 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.890510" , + ; + schema:includedInDataCatalog _:b10223278 ; + schema:license ; + schema:name "Age determination of Sidney_core1 peat core" ; + schema:publisher _:b10223263 ; + schema:url ; + schema:citation , + ; + schema:creator . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:comment "In data set doi:10.1594/PANGAEA.855474 some data (i.e. for 1316 m) are not correct by mistake, this flaw is corrected here. Please accept our apologies for the inconvenience caused by this. Eduard Bauerfeind." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b5619978 ; + schema:sourceOrganization ; + schema:spatialCoverage _:b5620011 ; + schema:temporalCoverage "2007-07-23T00:00:00/2008-07-15T00:00:00" ; + schema:variableMeasured _:b5619961 , + _:b5619967 , + _:b5619965 , + _:b5619982 , + _:b5619983 , + _:b5619970 , + _:b5619974 , + _:b5619972 , + _:b5619973 , + _:b5619994 , + _:b5619991 , + _:b5619989 , + _:b5620003 ; + schema:datePublished "2017"^^schema:Date , + "2017-08-11"^^schema:Date ; + schema:description "In data set doi:10.1594/PANGAEA.855474 some data (i.e. for 1316 m) are not correct by mistake, this flaw is corrected here. Please accept our apologies for the inconvenience caused by this. Eduard Bauerfeind." ; + schema:distribution _:b5619993 , + _:b5620004 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.879532" , + ; + schema:includedInDataCatalog _:b5619976 ; + schema:license ; + schema:name "Biogenic particle flux at AWI HAUSGARTEN central station HGIV from mooring FEVI16" ; + schema:publisher _:b5619997 ; + schema:url ; + schema:creator , + , + _:b9734424 , + _:b9734431 , + _:b9734391 , + _:b5619999 , + _:b5619968 , + _:b5619971 . + rdf:type schema:WebPage , + schema:CreativeWork ; + schema:identifier ; + schema:name "Documentation and data in original SOCAT V3 format of Malcolm Baldrige cruise CGC-90_leg_1 (2404 kByte, zipped)" ; + schema:url . + rdf:type schema:CreativeWork ; + schema:datePublished "1998"^^schema:Date ; + schema:identifier ; + schema:name "BSRN Station-to-archive file for station Regina (1998-06)" ; + schema:url ; + schema:creator _:b5620834 . + rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isPartOf _:b5620902 ; + schema:issueNumber "381" ; + schema:datePublished "1996"^^schema:Date ; + schema:identifier ; + schema:name "Reduced meltwater outflow from the Laurentide ice margin during the Younger Dryas" ; + schema:url ; + schema:creator , + , + . + rdf:type schema:WebPage , + schema:CreativeWork ; + schema:identifier ; + schema:name "Gallery of images of holotype Nesite ptychoperoides" ; + schema:url . + rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isBasedOn ; + schema:isPartOf _:b7489225 , + _:b15273903 , + _:b5621210 , + _:b9514168 ; + schema:issueNumber "59" ; + schema:pagination "631-640" ; + schema:datePublished "1981"^^schema:Date ; + schema:identifier "https://doi.org/10.2973/dsdp.proc.59.124.1981" , + ; + schema:name "Isotopic composition of oxygen, carbon, and sulfur in interstitial water and cores from Deep Sea Drilling Project Leg 59" ; + schema:url ; + schema:creator _:b5621189 , + _:b5621192 , + _:b5621196 , + _:b5621197 , + _:b5621234 , + _:b5621228 , + _:b5621229 , + _:b7489241 , + _:b7489242 , + _:b7489245 , + _:b7489247 , + _:b7489228 , + _:b7489248 , + _:b7489257 , + _:b15273873 , + _:b15273879 , + _:b15273882 , + _:b15273869 , + _:b15273891 , + _:b15273892 , + _:b15273894 , + _:b9514162 , + _:b9514165 , + _:b9514166 , + _:b9514169 , + _:b9514151 , + _:b9514156 , + _:b9514159 . + rdf:type schema:CreativeWork , + schema:PublicationIssue ; 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+ schema:isAccessibleForFree "false"^^xsd:boolean ; + schema:size _:b13372390 ; + schema:sourceOrganization ; + schema:spatialCoverage _:b13372408 ; + schema:temporalCoverage "2011-07-01T00:00:00/2011-07-31T23:59:00" ; + schema:variableMeasured _:b13372416 , + _:b13372425 , + _:b13372403 , + _:b13372400 , + _:b13372404 , + _:b13372405 , + _:b13372414 , + _:b13372412 , + _:b13372395 , + _:b13372392 , + _:b13372393 , + _:b13372399 , + _:b13372396 , + _:b13372378 ; + schema:workExample ; + schema:datePublished "2016"^^schema:Date , + "2016-11-10"^^schema:Date ; + schema:description "New version (2016-11-10), data recalculated with corrected calibration coefficients." ; + schema:distribution _:b13372388 , + _:b13372424 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.867972" , + ; + schema:includedInDataCatalog _:b13372385 ; + schema:name "Basic and other measurements of radiation at station Tiksi (2011-07)" ; + schema:publisher _:b13372382 ; + schema:url ; + schema:creator _:b13372389 , + _:b5621468 . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier ; + schema:name "Documentation and data in original SOCAT V3 format of Explorer of the Seas cruise Ex0248a (193 kByte, zipped)" ; + schema:url . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier "https://store.pangaea.de/documentation/TreeRing/data/5961B.xml" , + ; + schema:name "XML-file of tree-ring width from historical object 5961B" ; + schema:url . + rdf:type schema:CreativeWork ; + schema:datePublished "2016"^^schema:Date ; + schema:identifier ; + schema:name "BSRN Station-to-archive file for station Camborne (2012-07)" ; + schema:url ; + schema:creator _:b5622373 . + rdf:type schema:CreativeWork , + schema:Dataset ; + schema:abstract "The Integrated OceanDrilling Program's Expedition 302, the Arctic Coring Expedition (ACEX), recovered the first Cenozoic sedimentary sequence from the central Arctic Ocean. ACEX provided ground truth for basin scale geophysical interpretations and for guiding future exploration targets in this largely unexplored ocean basin. Here, we present results from a series of consolidation tests used to characterize sediment compressibility and permeability and integrate these with high-resolution measurements of bulk density, porosity and shear strength to investigate the stress history and the nature of prominent lithostratigraphic and seismostratigraphic boundaries in the ACEX record. Despite moderate sedimentation rates (10-30 m/Myr) and high permeability values (10**-15 -10**-18 m**2), consolidation and shear strength measurements both suggest an overall state of underconsolidation or overpressure. One-dimensional compaction modelling shows that to maintain such excess pore pressures, an in situ fluid source is required that exceeds the rate of fluid expulsion generated by mechanical compaction alone. Geochemical and sedimentological evidence is presented that identifes the Opal A-C/T transformation of biosiliceous rich sediments as a potential additional in situ fluid source.However, the combined rat of chemical and mechanical compaction remain too low to fully account for the observed pore pressure gradients, implying an additional diagenetic fluid source from within or below the recovered Cenozoic sediments from ACEX. Recognition of the Opal A-C/T reaction front in the ACEX record has broad reaching regional implications on slope stability and subsurface pressure evolution, and provides an important consideration for interpreting and correlating the spatially limited seismic data from the Arctic Ocean." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b5623135 ; + schema:spatialCoverage _:b5623130 ; + schema:temporalCoverage "2004-08-19T00:00:00/2004-08-26T00:00:00" ; + schema:datePublished "2012-09-14"^^schema:Date , + "2012"^^schema:Date ; + schema:description "The Integrated OceanDrilling Program's Expedition 302, the Arctic Coring Expedition (ACEX), recovered the first Cenozoic sedimentary sequence from the central Arctic Ocean. ACEX provided ground truth for basin scale geophysical interpretations and for guiding future exploration targets in this largely unexplored ocean basin. Here, we present results from a series of consolidation tests used to characterize sediment compressibility and permeability and integrate these with high-resolution measurements of bulk density, porosity and shear strength to investigate the stress history and the nature of prominent lithostratigraphic and seismostratigraphic boundaries in the ACEX record. Despite moderate sedimentation rates (10-30 m/Myr) and high permeability values (10**-15 -10**-18 m**2), consolidation and shear strength measurements both suggest an overall state of underconsolidation or overpressure. [\u2026]" ; + schema:distribution _:b5623133 ; + schema:identifier , + "https://doi.org/10.1594/PANGAEA.788585" ; + schema:includedInDataCatalog _:b5623129 ; + schema:license ; + schema:name "Consolidation tests, elastic properties and grain size measurements at the consolidations samples from different Holes of IODP Expedition 302" ; + schema:publisher _:b5623128 ; + schema:url ; + schema:citation ; + schema:creator , + , + _:b5623132 , + _:b5623131 , + _:b5623140 , + _:b5623136 , + _:b9479917 , + _:b9479933 , + _:b9479924 , + _:b9479922 . + rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isPartOf _:b13869761 , + _:b5623138 , + _:b8840921 , + _:b14490672 ; + schema:issueNumber "22" ; + schema:pagination "215-235" ; + schema:datePublished "2010"^^schema:Date ; + schema:identifier , + "https://doi.org/10.1111/j.1365-2117.2009.00403.x" ; + schema:name "Towards ground truthing exploration in the central Arctic Ocean: a Cenozoic compaction history from the Lomonosov Ridge" ; + schema:url ; + schema:creator _:b13869743 , + _:b13869735 , + _:b13869744 , + _:b13869746 , + , + _:b14490664 , + _:b14490666 , + _:b14490663 , + _:b14490682 , + , + _:b8840920 , + _:b8840912 , + _:b8840915 , + _:b8840930 , + _:b5623134 , + _:b5623127 , + _:b5623137 , + _:b5623139 . + rdf:type schema:WebPage , + schema:CreativeWork ; + schema:identifier ; + schema:name "Original visual core description from ODP Hole 161-976D" ; + schema:url . + rdf:type schema:WebPage , + schema:CreativeWork ; + schema:identifier ; + schema:name "All TSI images of ANT-XXVI/1 on 2009-10-27 in one zip archive (533 MB)" ; + schema:url . + rdf:type schema:CreativeWork ; + schema:datePublished "2009"^^schema:Date ; + schema:identifier , + "ftp://ftp.bsrn.awi.de/sxf/sxf0604.dat.gz" ; + schema:name "BSRN Station-to-archive file for station Sioux Falls (2004-06)" ; + schema:url ; + schema:creator . + rdf:type schema:WebPage , + schema:CreativeWork ; + schema:identifier ; + schema:name "Upper air data - ERA-CLIM ID 4866" ; + schema:url . + rdf:type schema:PublicationIssue , + schema:CreativeWork ; + schema:isBasedOn ; + schema:isPartOf _:b5624074 ; + schema:issueNumber "45" ; + schema:pagination "15-21" ; + schema:datePublished "2012"^^schema:Date ; + schema:identifier ; + schema:name "Measuring environmental stress in East Greenland polar bears, 1892-1927 and 1988-2009: What does hair cortisol tell us?" ; + schema:url ; + schema:creator _:b5624042 , + _:b5624056 , + _:b5624049 , + _:b5624099 , + _:b5624140 , + _:b5624150 , + , + , + , + , + , + , + . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier "https://store.pangaea.de/documentation/trackline_reports/M174_nav.jpg" , + ; + schema:name "Trackline map of navigation sensors from Meteor cruise M174" ; + schema:url . +ns12:M174 rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier ns12:M174 ; + schema:name "Station list of Meteor cruise M174" ; + schema:url ns12:M174 . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier ; + schema:name "Generalized master track of Meteor cruise M174" ; + schema:url . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier , + "https://store.pangaea.de/documentation/trackline_reports/M174_nav.pdf" ; + schema:name "Processing report for navigation sensors from Meteor cruise M174" ; + schema:url . + rdf:type schema:CreativeWork , + schema:Dataset ; + schema:abstract "Raw data acquired by position sensors on board RV METEOR during expedition M174 were processed to receive a validated master track which can be used as reference of further expedition data. During M174 the motion reference unit Kongsberg SeaTex AS MRU-5 combined with Kongsberg SeaTex AS Seapath 320 and two C and C Technologies GPS receivers C-NAV3050 were used as navigation sensors. Data were downloaded from DAVIS SHIP data base (https://dship.bsh.de) with a resolution of 1 sec. Processing and evaluation of the data is outlined in the data processing report. Processed data are provided as a master track with 1 sec resolution derived from the position sensors' data selected by priority and a generalized track with a reduced set of the most significant positions of the master track." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b12963721 ; + schema:sourceOrganization ; + schema:spatialCoverage _:b12963714 ; + schema:temporalCoverage "2021-04-12T00:00:00/2021-05-29T00:00:00" ; + schema:workExample ; + schema:datePublished "2021"^^schema:Date , + "2021-08-17"^^schema:Date ; + schema:description "Raw data acquired by position sensors on board RV METEOR during expedition M174 were processed to receive a validated master track which can be used as reference of further expedition data. During M174 the motion reference unit Kongsberg SeaTex AS MRU-5 combined with Kongsberg SeaTex AS Seapath 320 and two C and C Technologies GPS receivers C-NAV3050 were used as navigation sensors. Data were downloaded from DAVIS SHIP data base (https://dship.bsh.de) with a resolution of 1 sec. Processing and evaluation of the data is outlined in the data processing report. Processed data are provided as a master track with 1 sec resolution derived from the position sensors' data selected by priority and a generalized track with a reduced set of the most significant positions of the master track." ; + schema:distribution _:b12963724 ; + schema:identifier , + "https://doi.org/10.1594/PANGAEA.935037" ; + schema:includedInDataCatalog _:b12963711 ; + schema:keywords "1 sec resolution" ; + schema:license ; + schema:name "Master track of METEOR cruise M174 in 1 sec resolution (zipped, 27.2 MB)" ; + schema:publisher _:b12963713 ; + schema:url . +@prefix ns15: . + schema:citation ns15:cr_m174 , + , + ; + schema:creator . + rdf:type schema:CreativeWork , + schema:Dataset ; + schema:abstract "Raw data acquired by position sensors on board RV METEOR during expedition M174 were processed to receive a validated master track which can be used as reference of further expedition data. During M174 the motion reference unit Kongsberg SeaTex AS MRU-5 combined with Kongsberg SeaTex AS Seapath 320 and two C and C Technologies GPS receivers C-NAV3050 were used as navigation sensors. Data were downloaded from DAVIS SHIP data base (https://dship.bsh.de) with a resolution of 1 sec. Processing and evaluation of the data is outlined in the data processing report. Processed data are provided as a master track with 1 sec resolution derived from the position sensors' data selected by priority and a generalized track with a reduced set of the most significant positions of the master track." ; + schema:comment "This dataset contains the master track in 10 min resolution, for other resolutions please see \"Further details\" and Other version\" references." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b5624246 ; + schema:spatialCoverage _:b5624255 ; + schema:temporalCoverage "2021-04-12T06:20:00/2021-05-29T13:47:00" ; + schema:variableMeasured _:b5624245 , + _:b5624251 , + _:b5624248 , + _:b5624252 , + _:b5624267 ; + schema:workExample ; + schema:datePublished "2021"^^schema:Date , + "2021-08-17"^^schema:Date ; + schema:description "Raw data acquired by position sensors on board RV METEOR during expedition M174 were processed to receive a validated master track which can be used as reference of further expedition data. 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Since these holes were all drilled into extremely young crust near the crest of the East Pacific Rise, the rocks we recovered present an unusual opportunity to study the magnetic properties of submarine basalts before alteration has become pervasive. To take advantage of this opportunity and to complement the paleomagnetic studies conducted on these basalts by Day (1983, doi:10.2973/dsdp.proc.65.138.1983), we have studied, in the same samples, the following properties: saturation magnetization (Js); intensity and stability of isothermal remanent magnetization (IRM); hysteresis parameters, such as the coercive force (Hc), the remanent coercive force (HRC), and the ratio of saturation remanence (JRS) to saturation magnetization; susceptibility (x); and Curie temperature (Tc). In this chapter we will discuss the results of these studies in conjunction with the opaque mineralogy of the samples." ; + schema:comment "Sediment depth is given in mbsf. Stable Inclination: Sample 65-482C-15-4,68 = 14-18; sample 65-482D-10-2,111 = 40-42." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b8658736 ; + schema:spatialCoverage _:b8658775 ; + schema:temporalCoverage "1979-01-24T00:00:00/1979-03-05T00:00:00" ; + schema:variableMeasured _:b8658751 , + _:b8658748 , + _:b8658749 , + _:b8658746 , + _:b8658741 , + _:b8658738 , + _:b8658737 , + _:b8658734 , + _:b8658735 , + _:b8658732 , + _:b8658731 , + _:b8658729 , + _:b8658780 , + _:b8658781 , + _:b8658778 , + _:b8658779 , + _:b8658776 , + _:b8658777 , + _:b8658764 , + _:b8658762 , + _:b8658758 , + _:b8658755 , + _:b8658753 ; + schema:datePublished "1983"^^schema:Date , + "1983-08-19"^^schema:Date ; + schema:description "During DSDP Leg 65, we achieved significant basement penetration at three sites (482, 483, and 485) in the mouth of the Gulf of California (Lewis and Robinson, 1983, doi:10.2973/dsdp.proc.65.1983). Since these holes were all drilled into extremely young crust near the crest of the East Pacific Rise, the rocks we recovered present an unusual opportunity to study the magnetic properties of submarine basalts before alteration has become pervasive. To take advantage of this opportunity and to complement the paleomagnetic studies conducted on these basalts by Day (1983, doi:10.2973/dsdp.proc.65.138.1983), we have studied, in the same samples, the following properties: saturation magnetization (Js); intensity and stability of isothermal remanent magnetization (IRM); hysteresis parameters, such as the coercive force (Hc), the remanent coercive force (HRC), and the ratio of saturation remanence (JRS) to saturation magnetization; susceptibility (x); and Curie temperature (Tc). 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Supplemental information on the elevation (doi:10.5194/tc-13-665-2019) and surface mass balance changes (doi:10.5194/tc-13-281-2019) along the traverse route are also included for context. The samples came from relatively shallow depths of the snowpack (maximum = 2.03 m deep) and represent nitrate deposition that occurred from 0-6 years ago. These samples were collected in order to better understand the interaction and mass transfer of nitrate at the snow-air interface in Antarctica, with particular focus on determining the impacts of photolysis on nitrate.\nSnow samples were collected with three techniques: skin layer samples of the loose snow grains 2-6 mm deep on the snow surface, 1 m depth layer samples taken as a 5-10 cm thick layer from 1 m below the snow surface, and snow pits that extended 99-203 cm deep and were sampled at 3 cm continuous intervals. 250-1500 g of snow were collected into clean plastic bags, melted at room temperature at Concordia Station, Dome C, and then the nitrate was concentrated using an ionic exchange resin. Nitrate concentrations were determined using colorimetry. Isotopic analysis occurred at the Institut des G\u00E9osciences de l'Environnement, Grenoble, France, through bacterial denitrification and a MAT 253 mass spectrometer with Gas Bench." ; + schema:conditionsOfAccess "unrestricted" ; + schema:funder , + ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b11845288 ; + schema:spatialCoverage _:b11845281 ; + schema:temporalCoverage "2013-11-30T00:00:00/2013-12-26T00:00:00" ; + schema:datePublished "2022-09-15"^^schema:Date , + "2022"^^schema:Date ; + schema:description "This dataset contains isotopic ratios of nitrate analyzed from snow samples collected along the CHICTABA traverse in East Antarctica in Nov 2013-Jan 2014. Supplemental information on the elevation (doi:10.5194/tc-13-665-2019) and surface mass balance changes (doi:10.5194/tc-13-281-2019) along the traverse route are also included for context. The samples came from relatively shallow depths of the snowpack (maximum = 2.03 m deep) and represent nitrate deposition that occurred from 0-6 years ago. These samples were collected in order to better understand the interaction and mass transfer of nitrate at the snow-air interface in Antarctica, with particular focus on determining the impacts of photolysis on nitrate. 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At the same time, survival rates of Atlantic herring larvae were higher under OA (control pCO2: 0.1%, high pCO2: 1.7%) in the final phase of the study." ; + schema:conditionsOfAccess "unrestricted" ; + schema:funder ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b5655709 ; + schema:spatialCoverage _:b5655725 ; + schema:temporalCoverage "2015-05-03T00:00:00/2015-06-30T00:00:00" ; + schema:variableMeasured _:b5655689 , + _:b5655692 , + _:b5655693 , + _:b5655706 , + _:b5655707 , + _:b5655699 , + _:b5655703 , + _:b5655700 , + _:b5655727 , + _:b5655724 , + _:b5655714 , + _:b5655715 , + _:b5655713 , + _:b5655718 , + _:b5655717 , + _:b5655730 ; + schema:datePublished "2022-06-10"^^schema:Date , + "2022"^^schema:Date ; + schema:description "To evaluate the influence of ocean acidification on predatory plankton, e.g. Hydrozoa and fish larvae as well as their interaction in complex natural communities, we deployed eight pelagic mesocosms for 53 days (Mai to July) in Raunefjord, Norway, and enclosed 60 m\u00B3 of local seawater containing a natural plankton community under post-bloom conditions. 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Data are derived from video tows at 29 and 36 stations, respectively, at depths from 13 to 122m. Data is in the form of excel files with 2 sheets, one for each year. Each sheet contains co-ordinates and station names." ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b7980352 ; + schema:spatialCoverage _:b7980356 ; + schema:temporalCoverage "2006-01-01T00:00:00/2008-01-01T00:00:00" ; + schema:datePublished "2019"^^schema:Date , + "2019-06-19"^^schema:Date ; + schema:description "The dataset contains information about density (ind.m2) and percent cover of epibenthic organisms on the north-western shelf of the black sea, sampled in summer 2006 and spring 2008. Data are derived from video tows at 29 and 36 stations, respectively, at depths from 13 to 122m. Data is in the form of excel files with 2 sheets, one for each year. 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Estimated uncertainties for S and O are thus raised. Oxygen values at low levels are biased high. Files for CTD numbers 1, 3 and 32 are empty or nearly empty, as there is only upcast data which is not stored in these files. They are stored under the DOI just for completeness." ; + schema:conditionsOfAccess "unrestricted" ; + schema:funder ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:isBasedOn ; + schema:size _:b5657792 ; + schema:spatialCoverage _:b5657800 ; + schema:temporalCoverage "2008-11-26T08:24:04/2008-12-19T21:48:00" ; + schema:variableMeasured _:b5657771 , + _:b5657769 , + _:b5657773 , + _:b5657786 , + _:b5657790 , + _:b5657791 , + _:b5657777 , + _:b5657782 , + _:b5657795 , + _:b5657793 , + _:b5657799 ; + schema:workExample ; + schema:datePublished "2018"^^schema:Date , + "2018-03-27"^^schema:Date ; + schema:description "Matlab = 9.3.0.713579 (R2017b) Release = 6 Castpart = down nc_title = GEOMAR PO-processed CTD data of cruise Meteor 77/2 nc_data_type = station data nc_source = CTD profile observation nc_institution = Institute of Geosciences (IfG), University of Kiel nc_institution_references = http://www.ifg.uni-kiel.de/ nc_comment = Salinity and Oxygen data was calibrated with settings from subsequent cruise ! Estimated uncertainties for S and O are thus raised. Oxygen values at low levels are biased high. Files for CTD numbers 1, 3 and 32 are empty or nearly empty, as there is only upcast data which is not stored in these files. They are stored under the DOI just for completeness." ; + schema:distribution _:b5657770 , + _:b5657798 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.887705" , + . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:comment "This dataset has been updated by https://doi.pangaea.de/10.1594/PANGAEA.887705! Stations have been updated, do not use! Set to login protection April 2018.\n\nExpocode = 06M320081125,Version = 0.22 used on 2012/03/20 13:38:55,Release = 3,Castpart = down,nc_data_set_type = ctd,nc_ext = ctd,nc_title = IFM-GEOMAR PO-processed CTD data,nc_ship_name = FS Meteor III,nc_pi_name = Ralph Schneider,nc_cruise_leg = 2,nc_chief_scientist = Ralph Schneider,nc_author = Gerd Krahmann,nc_contact = gkrahmann@geomar.de,nc_data_type = station data,nc_source = CTD profile observation,nc_institution = Institute of Geosciences (IfG), University of Kiel,nc_institution_references = http://www.ifg.uni-kiel.de/ ,nc_comment = Salinity and Oxygen data was calibrated with settings from subsequent cruise! Estimated uncertainties for S and O are thus raised. 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Stations have been updated, do not use! Set to login protection April 2018.\n\nExpocode = 06M320081125,Version = 0.22 used on 2012/03/20 13:38:55,Release = 3,Castpart = down,nc_data_set_type = ctd,nc_ext = ctd,nc_title = IFM-GEOMAR PO-processed CTD data,nc_ship_name = FS Meteor III,nc_pi_name = Ralph Schneider,nc_cruise_leg = 2,nc_chief_scientist = Ralph Schneider,nc_author = Gerd Krahmann,nc_contact = gkrahmann@geomar.de,nc_data_type = station data,nc_source = CTD profile observation,nc_institution = Institute of Geosciences (IfG), University of Kiel,nc_institution_references = http://www.ifg.uni-kiel.de/ ,nc_comment = Salinity and Oxygen data was calibrated with settings from subsequent cruise! Estimated uncertainties for S and O are thus raised. [\u2026]" ; + schema:distribution _:b9959600 , + _:b9959594 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.778021" , + . + rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isBasedOn ; + schema:isPartOf _:b13816317 , + _:b9280310 , + _:b11101039 , + _:b5658327 ; + schema:issueNumber "10(6)" ; + schema:pagination "1047-1061" ; + schema:datePublished "1995"^^schema:Date ; + schema:identifier "https://doi.org/10.1029/95PA02644" , + . + rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isPartOf _:b9972331 , + _:b7561315 , + _:b11807748 , + _:b5658514 ; + schema:issueNumber "219" ; + schema:pagination "203\u2013209" ; + schema:datePublished "1974"^^schema:Date ; + schema:identifier "hdl:10013/epic.41396.d001" , + . + rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isBasedOn ; + schema:isPartOf _:b10193026 , + _:b5658535 ; + schema:issueNumber "24(7-9)" ; + schema:pagination "835-852" ; + schema:datePublished "2005"^^schema:Date ; + schema:identifier , + "https://doi.org/10.1016/j.quascirev.2004.05.011" . +ns9:cp-11-687-2015 rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isBasedOn ; + schema:isPartOf _:b5658504 ; + schema:issueNumber "11(4)" ; + schema:pagination "687-696" ; + schema:datePublished "2015"^^schema:Date ; + schema:identifier ns9:cp-11-687-2015 . + rdf:type schema:CreativeWork , + schema:PublicationIssue ; + schema:isBasedOn ; + schema:isPartOf _:b9398896 , + _:b5658509 ; + schema:issueNumber "405(6785)" ; + schema:pagination "442-445" ; + schema:datePublished "2000"^^schema:Date ; + schema:identifier , + "https://doi.org/10.1038/35013033" . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:abstract "Voltages are measured by a sun photometer, type SP1a by Dr. Schulz & Partner GmbH in 17 wavelengths between \u03BB = 369nm to 1023nm with a field of view of 1\u00B0 \u00D7 1\u00B0 and a time resolution of 1 minute. In winter 2012/13 a new sun photometer was installed and just 10 of 17 wavelengths remained in the same wavelength range. With the nine out of ten wavelengths optical parameters like the AOD are computed. The one, which is devoted to water vapor is omitted. The instrument is calibrated regularly in pristine conditions at Iza\u00F1a, Tenerife, via Langley method.\nThe number of individual measurements differs between a few hundreds, especially in March and September, to up to 12,000 in early summer. No trend in each month can be seen comparing the amount of cloud-free measurements over the years. Only an annual cycle due to polar day and night is included in the data. Due to the instrument data is only available in clear sky conditions." ; + schema:comment "This data set is only the raw data corresponding to doi:10.1594/PANGAEA.942369. No calculation, for example for AOD, is done, but can be performed by everyone with the provided data in the following way (the gauge values of every day can be found in the header):\n1) spectra transmission: TR = (U20/UE *KFM)^(1/M), with U20: measured voltage, UE: gauge voltage/extraterrestrial signal, KFM = solar eccentricity, M: air mass\n2) total AOD: tau_G = |ln(TR)|\n3) ozone AOD: tau_O3 = (O3_Dob * O3_Gaug) / 1000, with O3_Dob: external measurement value for total ozone concentration in column [DU], O3_Gaug: Gauge value of filter\n4) AOD of Rayleigh atmosphere: tau_R = P/P0 * (0.00865*\u03BB^ex), ex = - (3.9164 + 0.074*\u03BB + 0.05/\u03BB), with P = 1013.25hPa, P0: pressure at measurement point [hPa], \u03BB: wavelength of filter [\u00B5m]\n5) AOD of aerosol: tau_AE = tau_G - tau_R - tau_O3\n\nThe used instrument for the measurement period was SP1A34. \n---\nThe data is a tar.gz file. Each measurement day contains in netcdf format the following variables:\nTime (minutes after midnight UTC)\nwavelengths ([nm], lambda)\npressure [hPa]\nvoltage [V]\nHeader with gauge values" ; + schema:conditionsOfAccess "access rights needed" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "false"^^xsd:boolean ; + schema:isPartOf ; + schema:size _:b5658834 ; + schema:spatialCoverage _:b5658831 ; + schema:workExample ; + schema:datePublished "2022-03-18"^^schema:Date , + "2022"^^schema:Date ; + schema:description "Voltages are measured by a sun photometer, type SP1a by Dr. Schulz & Partner GmbH in 17 wavelengths between \u03BB = 369nm to 1023nm with a field of view of 1\u00B0 \u00D7 1\u00B0 and a time resolution of 1 minute. In winter 2012/13 a new sun photometer was installed and just 10 of 17 wavelengths remained in the same wavelength range. With the nine out of ten wavelengths optical parameters like the AOD are computed. The one, which is devoted to water vapor is omitted. The instrument is calibrated regularly in pristine conditions at Iza\u00F1a, Tenerife, via Langley method. [\u2026]" ; + schema:distribution _:b5658832 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.942468" , + . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:abstract "Aerosol optical depth (AOD) is measured by a sun photometer, type SP1a by Dr. Schulz & Partner GmbH in 17 wavelengths between \u03BB = 369nm to 1023nm with a field of view of 1\u00B0 \u00D7 1\u00B0 and a time resolution of 1 minute. In winter 2012/13 a new sun photometer was installed and just 10 of 17 wavelengths remained in the same wavelength range. With the nine out of ten wavelengths optical parameters like the AOD are computed. The one, which is devoted to water vapor is omitted. The instrument is calibrated regularly in pristine conditions at Iza\u00F1a, Tenerife, via Langley method. A cloud screening based on short scale fluctuations of the AOD is used. The uncertainty for the AOD is generally said to be around 0.01. However, this is the maximum error of the instrument because the fluctuations are much smaller by comparing data minute by minute under low or constant aerosol conditions.\n\nThe number of individual measurements differs between a few hundreds, especially in March and September, to up to 12,000 in early summer. No trend in each month can be seen comparing the amount of cloud-free measurements over the years. Only an annual cycle due to polar day and night is included in the data. Due to the instrument data is only available in clear sky conditions. In this regard the data should represent the real aerosol conditions. Only aerosols that are advected and processed within clouds or hygroscopic growth cannot be measured by this instrument.\n\nIn this data set AOD, Angstrom-Exponent and modified Angstrom-Exponent (Gra\u00DFl, Ritter 2019, Remote Sensing, https://doi.org/10.3390/rs11111362) are given for the sun photometer at Zeppelin Station, operated by AWIPEV, for the days March 24th and April 13th 2012. The variables are in netcdf format for each measurement day. The used instrument for the measurement period was SP1A13." ; + schema:comment "Each measurement day contains in netcdf format the following variables:\nTime (minutes after midnight UTC)\nwavelengths (nm lambda)\nAOD\nModified Angstrom parameters (3 values!)\ntraditional Angstrom parameters (2 values)" ; + schema:conditionsOfAccess "access rights needed" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "false"^^xsd:boolean ; + schema:isBasedOn ; + schema:isPartOf ; + schema:size _:b6260862 ; + schema:spatialCoverage _:b6260861 ; + schema:temporalCoverage "2012-03-24T00:00:00/2012-04-13T00:00:00" ; + schema:variableMeasured _:b6260854 , + _:b6260852 , + _:b6260850 , + _:b6260860 ; + schema:datePublished "2022-03-15"^^schema:Date , + "2022"^^schema:Date ; + schema:description "Aerosol optical depth (AOD) is measured by a sun photometer, type SP1a by Dr. Schulz & Partner GmbH in 17 wavelengths between \u03BB = 369nm to 1023nm with a field of view of 1\u00B0 \u00D7 1\u00B0 and a time resolution of 1 minute. In winter 2012/13 a new sun photometer was installed and just 10 of 17 wavelengths remained in the same wavelength range. With the nine out of ten wavelengths optical parameters like the AOD are computed. The one, which is devoted to water vapor is omitted. The instrument is calibrated regularly in pristine conditions at Iza\u00F1a, Tenerife, via Langley method. A cloud screening based on short scale fluctuations of the AOD is used. The uncertainty for the AOD is generally said to be around 0.01. However, this is the maximum error of the instrument because the fluctuations are much smaller by comparing data minute by minute under low or constant aerosol conditions. [\u2026]" ; + schema:distribution _:b6260859 , + _:b6260853 ; + schema:identifier , + "https://doi.org/10.1594/PANGAEA.942369" . + rdf:type schema:CreativeWork ; + schema:datePublished "2014"^^schema:Date ; + schema:identifier . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:isPartOf ; + schema:size _:b5659419 ; + schema:spatialCoverage _:b5659451 ; + schema:variableMeasured _:b5659458 , + _:b5659457 , + _:b5659414 , + _:b5659413 , + _:b5659421 , + _:b5659417 , + _:b5659455 , + _:b5659450 , + _:b5659430 , + _:b5659429 , + _:b5659439 , + _:b5659436 , + _:b5659433 ; + schema:datePublished "2010-07-26"^^schema:Date , + "2010"^^schema:Date ; + schema:description "This dataset is about: (Appendix A) Stable carbon and oxygen isotope ratios of foraminifera from IODP Hole 306-U1313. Please consult parent dataset @ https://doi.org/10.1594/PANGAEA.786601 for more information." ; + schema:distribution _:b5659416 , + _:b5659415 ; + schema:identifier , + "https://doi.org/10.1594/PANGAEA.786599" . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier . + rdf:type schema:CreativeWork ; + schema:datePublished "2020"^^schema:Date ; + schema:identifier , + "ftp://ftp.bsrn.awi.de/bos/bos0320.dat.gz" . + rdf:type schema:CreativeWork ; + schema:datePublished "2010"^^schema:Date ; + schema:identifier "ftp://ftp.bsrn.awi.de/lin/lin1198.dat.gz" , + . + rdf:type schema:CreativeWork ; + schema:isBasedOn ; + schema:datePublished "2015"^^schema:Date ; + schema:identifier , + "https://doi.org/10.1371/journal.pone.0134935" . + rdf:type schema:CreativeWork ; + schema:datePublished "2020"^^schema:Date ; + schema:identifier , + "ftp://ftp.bsrn.awi.de/e13/e130917.dat.gz" . +ns7:S0033822200034627 rdf:type schema:CreativeWork , + schema:PublicationIssue ; 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+ schema:datePublished "2008"^^schema:Date , + "2008-05-30"^^schema:Date ; + schema:description "This dataset is about: Mesozooplankton abundance in water of the Aegean Sea at Station JUNE-1998-MNB2wp2." ; + schema:distribution _:b5662926 , + _:b5663010 ; + schema:identifier , + "https://doi.org/10.1594/PANGAEA.695102" . + rdf:type schema:CreativeWork ; + schema:datePublished "2018"^^schema:Date ; + schema:identifier . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier . + rdf:type schema:CreativeWork ; + schema:datePublished "2003"^^schema:Date ; + schema:identifier "ftp://ftp.bsrn.awi.de/daa/daa0903.dat.gz" , + . + rdf:type schema:CreativeWork , + schema:WebPage ; + schema:identifier , + "https://store.pangaea.de/documentation/TreeRing/data/6681B.xml" . + rdf:type schema:CreativeWork , + schema:PublicationIssue ; 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+ schema:issueNumber "545" ; + schema:pagination "109632" ; + schema:datePublished "2020"^^schema:Date ; + schema:identifier "https://doi.org/10.1016/j.palaeo.2020.109632" , + . + rdf:type schema:Dataset , + schema:CreativeWork ; + schema:abstract "This data set was used to trace the climate and hydrologic variability in the northern Mediterranean in the late Miocene, from about 6.07 to 5.92 Ma. This time interval encompasses the onset (5.97 Ma) of the Messinian salinity crisis (MSC), an event which lead to prominent environmental changes in the Mediterranean area. The Messinian organic-rich shales and marls are cropping out in the Govone section (44\u00B048\u203208\u2033N; 8\u00B007\u203234\u2033E, NW Italy). The analyses included X-ray fluorescence (XRF), lipid biomarkers and their compound specific carbon and hydrogen stable isotopes. XRF was done to assess the distribution of major (Al, Si, Ti) and trace (Zr) elements. Si/Al, Ti/Al and Zr/Al ratios were used to qualitatively assess the influence of aeolian inputs. Lipid biomarker analyses targeted long-chain n-alkanes, derived from leaf waxes of land plants, which were identified and quantified, allowing to trace terrestrial organic matter input in the study area. We calculated the Carbon Preference Index (Bryan and Evans, 1961) based on the concentration of the n-C24 to n-C34 alkanes to trace the level of degradation/contamination of the terrestrial organic matter. Finally, carbon (\u03B413C) and hydrogen (\u03B42H) stable isotopes of the n-C31 and n-C33 alkanes were determined. \u03B413C values allowed to reconstruct variations in vegetation (C3 vs C4 plants), while \u03B42H values helped in reconstructing the hydrological cycle at the onset of the Messinian salinity crisis in the northern Mediterranean.\nBray, E.E., Evans, E.D., 1961. Geochimica and Cosmochimica Acta 22, 2\u201315. https://doi.org/10.1016/0016-7037(61)90069-2" ; + schema:conditionsOfAccess "unrestricted" ; + schema:inLanguage "en" ; + schema:isAccessibleForFree "true"^^xsd:boolean ; + schema:size _:b10755143 ; + schema:spatialCoverage _:b10755138 ; + schema:datePublished "2020-06-08"^^schema:Date , + "2020"^^schema:Date ; + schema:description "This data set was used to trace the climate and hydrologic variability in the northern Mediterranean in the late Miocene, from about 6.07 to 5.92 Ma. This time interval encompasses the onset (5.97 Ma) of the Messinian salinity crisis (MSC), an event which lead to prominent environmental changes in the Mediterranean area. The Messinian organic-rich shales and marls are cropping out in the Govone section (44\u00B048\u203208\u2033N; 8\u00B007\u203234\u2033E, NW Italy). The analyses included X-ray fluorescence (XRF), lipid biomarkers and their compound specific carbon and hydrogen stable isotopes. XRF was done to assess the distribution of major (Al, Si, Ti) and trace (Zr) elements. Si/Al, Ti/Al and Zr/Al ratios were used to qualitatively assess the influence of aeolian inputs. Lipid biomarker analyses targeted long-chain n-alkanes, derived from leaf waxes of land plants, which were identified and quantified, allowing to trace terrestrial organic matter input in the study area. We calculated the Carbon Preference Index (Bryan and Evans, 1961) based on the concentration of the n-C24 to n-C34 alkanes to trace the level of degradation/contamination of the terrestrial organic matter. Finally, carbon (\u03B413C) and hydrogen (\u03B42H) stable isotopes of the n-C31 and n-C33 alkanes were determined. \u03B413C values allowed to reconstruct variations in vegetation (C3 vs C4 plants), while \u03B42H values helped in reconstructing the hydrological cycle at the onset of the Messinian salinity crisis in the northern Mediterranean. [\u2026]" ; + schema:distribution _:b10755136 ; + schema:identifier "https://doi.org/10.1594/PANGAEA.918497" . + rdf:type schema:PublicationIssue , + schema:CreativeWork . diff --git a/examples/small-graph.ttl b/examples/small-graph.ttl new file mode 100644 index 0000000..1d1f0eb --- /dev/null +++ b/examples/small-graph.ttl @@ -0,0 +1,526 @@ +@prefix owl: . +@prefix rdf: . +@prefix xml: . +@prefix xsd: . +@prefix rdfs: . +@prefix schema: . +@base . + +[ rdf:type owl:Ontology + ] . + +################################################################# +# Annotation properties +################################################################# + +### http://schema.org/abstract +schema:abstract rdf:type owl:AnnotationProperty . + + +### http://schema.org/additionalType +schema:additionalType rdf:type owl:AnnotationProperty . + + +### http://schema.org/affiliation +schema:affiliation rdf:type owl:AnnotationProperty . + + +### http://schema.org/author +schema:author rdf:type owl:AnnotationProperty . + + +### http://schema.org/citation +schema:citation rdf:type owl:AnnotationProperty . + + +### http://schema.org/comment +schema:comment rdf:type owl:AnnotationProperty . + + +### http://schema.org/conditionsOfAccess +schema:conditionsOfAccess rdf:type owl:AnnotationProperty . + + +### http://schema.org/contentSize +schema:contentSize rdf:type owl:AnnotationProperty . + + +### http://schema.org/contentUrl +schema:contentUrl rdf:type owl:AnnotationProperty . + + +### http://schema.org/contributorType +schema:contributorType rdf:type owl:AnnotationProperty . + + +### http://schema.org/creator +schema:creator rdf:type owl:AnnotationProperty . + + +### http://schema.org/dateModified +schema:dateModified rdf:type owl:AnnotationProperty . + + +### http://schema.org/datePublished +schema:datePublished rdf:type owl:AnnotationProperty . + + +### http://schema.org/description +schema:description rdf:type owl:AnnotationProperty . + + +### http://schema.org/distribution +schema:distribution rdf:type owl:AnnotationProperty . + + +### http://schema.org/editor +schema:editor rdf:type owl:AnnotationProperty . + + +### http://schema.org/email +schema:email rdf:type owl:AnnotationProperty . + + +### http://schema.org/encodingFormat +schema:encodingFormat rdf:type owl:AnnotationProperty . + + +### http://schema.org/fileFormat +schema:fileFormat rdf:type owl:AnnotationProperty . + + +### http://schema.org/funder +schema:funder rdf:type owl:AnnotationProperty . + + +### http://schema.org/identifier +schema:identifier rdf:type owl:AnnotationProperty . + + +### http://schema.org/inLanguage +schema:inLanguage rdf:type owl:AnnotationProperty . + + +### http://schema.org/includedInDataCatalog +schema:includedInDataCatalog rdf:type owl:AnnotationProperty . + + +### http://schema.org/isAccessibleForFree +schema:isAccessibleForFree rdf:type owl:AnnotationProperty . + + +### http://schema.org/keywords +schema:keywords rdf:type owl:AnnotationProperty . + + +### http://schema.org/license +schema:license rdf:type owl:AnnotationProperty . + + +### http://schema.org/name +schema:name rdf:type owl:AnnotationProperty . + + +### http://schema.org/provider +schema:provider rdf:type owl:AnnotationProperty . + + +### http://schema.org/publisher +schema:publisher rdf:type owl:AnnotationProperty . + + +### http://schema.org/schemaVersion +schema:schemaVersion rdf:type owl:AnnotationProperty . + + +### http://schema.org/size +schema:size rdf:type owl:AnnotationProperty . + + +### http://schema.org/spatialCoverage +schema:spatialCoverage rdf:type owl:AnnotationProperty . + + +### http://schema.org/text +schema:text rdf:type owl:AnnotationProperty . + + +### http://schema.org/unitText +schema:unitText rdf:type owl:AnnotationProperty . + + +### http://schema.org/url +schema:url rdf:type owl:AnnotationProperty . + + +### http://schema.org/value +schema:value rdf:type owl:AnnotationProperty . + + +### http://schema.org/variableMeasured +schema:variableMeasured rdf:type owl:AnnotationProperty . + + +### http://schema.org/version +schema:version rdf:type owl:AnnotationProperty . + + +### http://schema.org/workExample +schema:workExample rdf:type owl:AnnotationProperty . + + +################################################################# +# Datatypes +################################################################# + +### http://schema.org/Date +schema:Date rdf:type rdfs:Datatype . + + +################################################################# +# Classes +################################################################# + +### http://schema.org/Collection +schema:Collection rdf:type owl:Class . + + +### http://schema.org/CreativeWork +schema:CreativeWork rdf:type owl:Class . + + +### http://schema.org/DataCatalog +schema:DataCatalog rdf:type owl:Class . + + +### http://schema.org/DataDownload +schema:DataDownload rdf:type owl:Class . + + +### http://schema.org/Dataset +schema:Dataset rdf:type owl:Class . + + +### http://schema.org/Organization +schema:Organization rdf:type owl:Class ; + schema:name "datacite" . + + +### http://schema.org/Person +schema:Person rdf:type owl:Class . + + +### http://schema.org/QuantitativeValue +schema:QuantitativeValue rdf:type owl:Class . + + +################################################################# +# Individuals +################################################################# + +### http://purls.helmholtz-metadaten.de/helmholtzkg_0006001 + rdf:type owl:NamedIndividual , + schema:Organization ; + schema:name "Accelerating Devices Lab" . + + +### http://purls.helmholtz-metadaten.de/helmholtzkg_0006002 + rdf:type owl:NamedIndividual , + schema:Organization ; + schema:name "KIT-Bibliothek" ; + rdfs:label "KIT-Bibliothek"@en . + + +### http://purls.helmholtz-metadaten.de/helmholtzkg_0006003 + rdf:type owl:NamedIndividual , + schema:Person ; + schema:name "Joachim Allgaier" ; + rdfs:label "Joachim Allgaier"@en . + + +### http://purls.helmholtz-metadaten.de/helmholtzkg_0006004 + rdf:type owl:NamedIndividual , + schema:Person ; + schema:affiliation ; + schema:contributorType "WorkPackageLeader" ; + schema:name "Holger Maass" ; + rdfs:label "Holger Maass"@en . + + +### http://purls.helmholtz-metadaten.de/helmholtzkg_0006005 + rdf:type owl:NamedIndividual , + schema:QuantitativeValue ; + schema:unitText "MBytes" ; + schema:value 2.7000000000000001776 ; + rdfs:label "unit1"@en . + + +### http://purls.helmholtz-metadaten.de/helmholtzkg_0006006 + rdf:type owl:NamedIndividual , + schema:Person ; + schema:email "hhinrichsen@geomar.de" ; + schema:name "Hans-Harald Hinrichsen" ; + rdfs:label "Hans-Harald Hinrichsen"@en . + + +### https://doi.org/10.1594/PANGAEA.874396 + rdf:type owl:NamedIndividual , + schema:Dataset ; + schema:abstract """This data set contains several tables with modeled and measured data and also correlations coefficient data used in the publication. + +The model data are aggregations of areas in the Arkona Basin (AB) and Bornholm Basin (BB) from the Kiel Baltic Sea Ice and Ocean model (BSIOM) for the period 1971 to 2015. See the puplication for details about horizontal aggregation. Raw Data of the Model is not included in this data deposition, but are given by the authors upon request and when credited in any use of the data. +Monthly Means of the AB and BB are used for detailed correlation analysis with time lags (raw data is given in the files \"ModelData_O2_BornholmBasin_MM_ModelDepths..\" and \"ModelData_S_ArkonaBasin_MM_modelDepths..\"). Resulting data of all combinations for depth layers in either Basin, and Monthly lags up to a full year, is given in the \"ModelData_correlation_ABMM_vs_BBMM.txt\" file. + +Monthly profiles of the Bornholm Basin were also used to produce monthly means of S,T,O2 and cod egg survival chances on certain levels of water density (1009, 1010, 1011, 1012 and 1013 kg/m^3) given in the file \"ModelData_O2_BornholmBasin_MM_onDensLayers.txt\" + +Model data for the Bornholm Basin were also used to produce a time series of daily resolution of the mean oxygen content below the halocline. Data is given in the file \"ModelData_O2_BornholmBasin_DM_rough_layers.txt\" + +Measured salinity at the 33m depth level in a daily resolution is taken from the Arkona Basin platform (permanent measuring buoy) operated by the Federal Maritime and Hydrography Agency, Hamburg, Germany. Given in file \"Measured_S_ArkonaBasin_DM_33m_corrected.txt\"""" ; + schema:comment "The research leading to these results has received funding from BONUS (INSPIRE and BIO-C3 projects), the joint Baltic Sea research and development programme (Art 185), funded jointly from the European Union's Seventh Programme for research, technological development and demonstration (Forschungszentrum Jülich Beteiligungsgesellschaft mbH (Germany) and BMBF (Grant No. 03F0682A). We also like to thank the DEMO project - \"DEMOnstration exercise for Integrated Ecosystem Assessment and Advice of Baltic Sea fish stocks\" financed by Granholms stiftelse and Baltic Eye at Stockholm University Baltic Sea Centre for support. None of the named funding sources were involved in study design; in collection, analysis and interpretation of data; in the writing of the report; and in the decision to submit the article for publication." ; + schema:conditionsOfAccess "unrestricted" ; + schema:creator , + , + [ ] , +[ ] ; +schema:datePublished "2017-04-10"^^schema:Date ; +schema:description """This data set contains several tables with modeled and measured data and also correlations coefficient data used in the publication. + +The model data are aggregations of areas in the Arkona Basin (AB) and Bornholm Basin (BB) from the Kiel Baltic Sea Ice and Ocean model (BSIOM) for the period 1971 to 2015. See the puplication for details about horizontal aggregation. Raw Data of the Model is not included in this data deposition, but are given by the authors upon request and when credited in any use of the data. […]""" ; +schema:distribution [ ] , +[ ] ; +schema:identifier ; +schema:inLanguage "en" ; +schema:includedInDataCatalog [ ] ; +schema:isAccessibleForFree "true"^^xsd:boolean ; +schema:license ; +schema:name "Modeled and Measured salinity, oxygen and derived cod egg survival data for the Arkona Basin and the Bornholm Basin in the Baltic Sea" ; +schema:publisher [ ] ; +schema:size [ ] ; +schema:url ; +schema:variableMeasured [ ] , +[ ] , +[ ] , +[ ] , +[ ] ; +schema:workExample . + + +### https://doi.org/10.1594/PANGAEA.883821 + rdf:type owl:NamedIndividual , + schema:Dataset ; + schema:abstract """This data set contains results produced by particle drift modeling exercises with the Kiel Baltic Sea Ice-Ocean Model (BSIOM) to analyze the variability of large scale drift patterns within the Baltic Sea. The provided parameters are: +- Mean geographical distance [km], divided into north-south and east-west component +- stability of particle drift distance +- relative dispersal [%] +The parameters were separated and averaged for the following time and space intervals: +- drift duration [days] in 5 days increments from 5 to 50 days drift +- vertical particle drift depth [m] with the following values: 2.5; 7.5; 12.5; 17.5; 25.0; 35.0; 45.0; 55.0; 65.0; 75.0; 85.0 +- horizontal resolution: 54.0°N to 66.0°N in 0.5° increments and 10°E to 30°E in 1° increments. + +The analyses based on this data set are described in more detail and results are discussed in the article. + +Connectivity between different populations of a species is a central parameter in the fields of ecology and evolutionary biology. We here provided decadally, regionally, and depth layer resolved information on connectivity and dispersal patterns for the entire Baltic Sea as a tool for supporting population genetic and ecological studies. The general method to assess dispersal used was bio-physical modelling, which is suitable for biological dispersal that is highly influenced by the physical water transport in ocean circulation. The results were assessed from Lagrangian particle tracking using ocean circulation model outputs. Generally, for the whole Baltic Sea as well as for all subareas, we observed persistent patterns of dispersal that reflected the basin-like structure of the Baltic Sea, with less transport between the basins. At the same time, dispersal distance and in extension, local retention versus dispersal of particles to other sub-areas, varied considerably over four decades (1970–2010) and among regions within the Baltic Sea, corresponding to a range from high connectivity to partial dispersal barriers. Based on the example of Eastern Baltic cod we then investigated how our dispersal distance datasets can serve as a tool to assess dispersal and the expected connectivity among different populations of a species, as long as some biological information is available. For example, our finding of high dispersal of particles from the Bornholm Basin to the other Eastern Baltic basins could help to explain recent results indicating lack of genetic differentiation of cod across the eastern Baltic Sea. Our results also indicate that the shift in spawning time observed in cod over the past decades and the resulting exposure of eggs and larvae in the water column to a time of the year with a different current regime has likely affected egg and larval export. Finally, our case study also demonstrates how inter-annual variability of ocean current speed and direction at the time of peak reproduction is likely to affect the connectivity among the subareas in the Baltic. To conclude, connectivity datasets from this study are freely available, and can represent a powerful tool to apply in evolutionary and ecological studies of a variety of species in the Baltic Sea.""" ; + schema:comment "The data resulted from research conducted within the BONUS BIO-C3 project and was supported by BONUS (Art 185), funded jointly by the EU and the Forschungszentrum Jülich Beteiligungsgesellschaft mbH (03F0682A) (Germany)." ; + schema:conditionsOfAccess "unrestricted" ; + schema:creator , + , + [ ] ; +schema:datePublished "2017-12-06"^^schema:Date ; +schema:description """This data set contains results produced by particle drift modeling exercises with the Kiel Baltic Sea Ice-Ocean Model (BSIOM) to analyze the variability of large scale drift patterns within the Baltic Sea. The provided parameters are: +- Mean geographical distance [km], divided into north-south and east-west component […]""" ; +schema:distribution [ ] ; +schema:identifier ; +schema:inLanguage "en" ; +schema:includedInDataCatalog [ ] ; +schema:isAccessibleForFree "true"^^xsd:boolean ; +schema:license ; +schema:name "Data base of timely, vertically, and horizontally highly resolved dispersal, stability, and drift distance of passively drifting particles in the Baltic Sea with the Kiel Baltic Sea Ice-Ocean Model (BSIOM)" ; +schema:publisher [ ] ; +schema:size ; +schema:url . + + +### https://doi.org/10.26165/JUELICH-DATA/OWA443 + rdf:type owl:NamedIndividual , + schema:Dataset ; + schema:author , + , + ; + schema:citation ; + schema:creator , + , + ; + schema:dateModified "2022-03-15"^^schema:Date ; + schema:datePublished "2021-01-28"^^schema:Date ; + schema:description "GROMACS topologies and equilibrium configurations of ternary mixtures of as presented in the article." ; + schema:keywords "3-methylpyridine" , + "Chemistry" , + "Physics" , + "antagonistic salts" , + "molecular dynamics" , + "tetraphenylborate" ; + schema:license [ rdf:type schema:Dataset ; + schema:text "CC0" ; + schema:url + ] ; + schema:name "Monolayer Structure of Supramolecular Antagonistic Salt Aggregates - Topologies and Configurations" ; + schema:provider [ rdf:type schema:Organization ; + schema:name "Jülich DATA" + ] ; + schema:publisher [ rdf:type schema:Organization ; + schema:name "Jülich DATA" + ] ; + schema:version "1" . + + +### https://doi.org/10.26165/JUELICH-DATA/VE2KNS + rdf:type owl:NamedIndividual , + schema:Dataset ; + schema:author , + , + , + ; + schema:creator , + , + , + ; + schema:dateModified "2022-03-16"^^schema:Date ; + schema:datePublished "2021-02-24"^^schema:Date ; + schema:description "Three instruments using different techniques were used to measure gaseous formaldehyde (HCHO) concentrations in experiments in the atmospheric simulation chamber SAPHIR at Forschungszentrum Jülich. One instrument detected HCHO by using the wet-chemical Hantzsch reaction for efficient gas stripping, chemical conversion and fluorescence measurement (AL4021, Aero Laser GmbH). An internal permeation gas source provides daily calibrations characterized by sulfuric acid titration (accuracy 5%). Measurements have a time resolution of 90s with a limit of detection (3-sigma) of 0.3 ppbv. In addition, a new commercial instrument making use of cavity ring-down spectroscopy (CRDS) determined concentrations of HCHO, water, and methane (G2307, Picarro Inc.). The limit of detection (3-sigma) is specified as 0.3 ppbv for an integration time of 300s and the accuracy is limited by the drift of the zero (manufacturer specification 1.5 ppbv). A custom-built, high-resolution laser differential optical absorption spectroscopy (DOAS) instrument provided HCHO measurements with a limit of detection (3-sigma) of 0.9 ppbv and an accuracy of 10% using an optical multiple reflection cell. The measurements were conducted from June to December 2019 in experiments in which ambient air was flowed through the chamber and also in experiments investigating the photochemical degradation of organic compounds in synthetic air. The data set contains HCHO measurements of all three instruments together with chamber parameters (temperature, pressure) and the water mixing ratio needed to correct CRDS measurements." ; + schema:distribution [ ] , +[ ] ; +schema:funder [ ] , +[ ] ; +schema:identifier , + "https://doi.org/10.26165/JUELICH-DATA/VE2KNS" ; +schema:includedInDataCatalog [ ] , +[ ] ; +schema:keywords "Earth and Environmental Sciences" , + "instrument comparison" ; +schema:license [ ] , +[ ] ; +schema:name "Formaldehyde Comparison (CRDS, DOAS, Hantzsch) SAPHIR chamber 2019" ; +schema:provider [ ] , +[ ] ; +schema:publisher [ ] , +[ ] ; +schema:version "1" . + + +### https://doi.org/10.34732/xdvblg-mn + rdf:type owl:NamedIndividual , + schema:Collection , + schema:CreativeWork ; + schema:additionalType "Blog" ; + schema:author ; + schema:datePublished "2022"^^schema:Date ; + schema:description "Notes from the Accelerating Devices Lab, an ATML at Jülich Supercomputing Centre (Forschungszentrum Jülich, Germany)." ; + schema:encodingFormat "HTML" ; + schema:inLanguage "en" ; + schema:keywords "FOS: Computer and information sciences" ; + schema:name "Accelerating Devices Lab Blog" ; + schema:provider ; + schema:publisher ; + schema:schemaVersion "http://datacite.org/schema/kernel-4" ; + schema:url ; + schema:version "1.0" . + + +### https://doi.org/10.5445/diva/2012-51 + rdf:type owl:NamedIndividual , + schema:CreativeWork ; + schema:author [ ] ; +schema:datePublished "2012"^^schema:Date ; +schema:description "Mediennutzung und Einschätzung von Medieneffekten durch Neurowissen- schaftler in Deutschland und den USA: Ergebnisse einer Online-Befragung Joachim Allgaier, Yin-Yueh Lo, Prof. Dr. Hans Peter Peters Forschungszentrum Jülich, Institut für Neurowissenschaft und Medizin" ; +schema:name "Mediennutzung und Einschätzung von Medieneffekten durch Neurowissenschaftler in Deutschland und den USA: Ergebnisse einer Online-Befragung" ; +schema:provider ; +schema:publisher ; +schema:url . + + +### https://doi.org/10.5880/tereno.dlr.cl.2018.all + rdf:type owl:NamedIndividual , + schema:CreativeWork , + schema:Dataset ; + schema:additionalType "Dataset" ; + schema:datePublished "2018"^^schema:Date ; + schema:description "This data collection compiles the climate stations of the DEMMIN test site operated by the National Ground Segment Neustrelitz (....." ; + schema:editor , + , + , + , + , + [ ] , +[ ] ; +schema:inLanguage "en" ; +schema:keywords "TERENO, TERENO Northeast, DEMMIN, Durable Environmental Multidisciplinary Monitoring Information Network, Climate stations" ; +schema:license ; +schema:name "TERENO (Northeast), Climate stations of the German Aerospace Center (DLR)" ; +schema:provider ; +schema:schemaVersion "http://datacite.org/schema/kernel-4" ; +schema:spatialCoverage [ ] . + + +### https://dx.doi.org/10.1021/acs.jpcb.0c10005 + rdf:type owl:NamedIndividual , + schema:CreativeWork ; + schema:identifier "https://dx.doi.org/10.1021/acs.jpcb.0c10005" ; + schema:text "Jung D, Harting J, Sega M. Monolayer Structures of Supramolecular Antagonistic Salt Aggregates." . + + +### https://orcid.org/0000-0002-0031-905X + rdf:type owl:NamedIndividual , + schema:Person ; + schema:affiliation ; + schema:identifier "https://orcid.org/0000-0002-0031-905X" ; + schema:name "Sega, Marcello" . + + +### https://orcid.org/0000-0002-4333-6191 + rdf:type owl:NamedIndividual , + schema:Person ; + schema:affiliation ; + schema:identifier "https://orcid.org/0000-0002-4333-6191" ; + schema:name "Jung, David" . + + +### https://orcid.org/0000-0002-9200-6623 + rdf:type owl:NamedIndividual , + schema:Person ; + schema:affiliation ; + schema:identifier "https://orcid.org/0000-0002-9200-6623" ; + schema:name "Harting, Jens" . + + +### https://ror.org/009jz9e24 + rdf:type owl:NamedIndividual , + schema:Organization ; + schema:name "PANGAEA" ; + schema:url "https://www.pangaea.de/" . + + +### https://ror.org/04bwf3e34 + rdf:type owl:NamedIndividual , + schema:Organization ; + schema:name "Deutsches Zentrum für Luft- und Raumfahrt e. V. (DLR)" . + + +### https://ror.org/04wxnsj81 + rdf:type owl:NamedIndividual , + schema:Organization ; + schema:name "datacite" . + + +[ rdf:type schema:DataDownload ; + schema:contentSize 72555077 ; + schema:contentUrl ; + schema:fileFormat "application/gzip" ; + schema:name "Monolayer Structure of Supramolecular Antagonistic Salt Aggregates - Topologies and Configurations.tgz" +] . + +[ rdf:type schema:DataCatalog ; + schema:name "Jülich DATA" ; + schema:url + ] . + +### Generated by the OWL API (version 4.5.26.2023-07-17T20:34:13Z) https://github.com/owlcs/owlapi diff --git a/index.html b/index.html index a910011..604d93e 100644 --- a/index.html +++ b/index.html @@ -2,7 +2,7 @@ - + RDF Graph Visualization diff --git a/package-lock.json b/package-lock.json index 284ce44..2794959 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,26 +1,38 @@ { "name": "rdf-graph-visualization", - "version": "0.0.0", + "version": "0.1.0", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "rdf-graph-visualization", - "version": "0.0.0", + "version": "0.1.0", + "license": "MIT", + "os": [ + "win32", + "linux", + "darwin" + ], "dependencies": { + "@chakra-ui/icons": "^2.2.4", "@chakra-ui/react": "^2.10.3", "@emotion/react": "^11.13.3", "@emotion/styled": "^11.13.0", "@react-hook/resize-observer": "^2.0.2", + "csstype": "^3.1.3", "framer-motion": "^11.11.9", + "js-yaml": "^4.1.0", "rdflib": "^2.2.35", "react": "^18.3.1", "react-dom": "^18.3.1", "react-force-graph-3d": "^1.24.4", + "react-icons": "^5.3.0", "three": "^0.169.0" }, "devDependencies": { "@eslint/js": "^9.11.1", + "@types/js-yaml": "^4.0.9", + "@types/node": "^22.9.0", "@types/react": "^18.3.10", "@types/react-dom": "^18.3.0", "@types/three": "^0.169.0", @@ -33,6 +45,12 @@ "typescript": "^5.5.3", "typescript-eslint": "^8.7.0", "vite": "^5.4.8" + }, + "optionalDependencies": { + "@lmdb/lmdb-linux-x64": "^3.0.13", + "@lmdb/lmdb-win32-x64": "^3.0.13", + "@rollup/rollup-linux-x64-gnu": "4.22.4", + "@rollup/rollup-win32-x64-msvc": "4.22.4" } }, "node_modules/@ampproject/remapping": { @@ -99,6 +117,12 @@ "url": "https://opencollective.com/babel" } }, + "node_modules/@babel/core/node_modules/convert-source-map": { + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/convert-source-map/-/convert-source-map-2.0.0.tgz", + "integrity": "sha512-Kvp459HrV2FEJ1CAsi1Ku+MY3kasH19TFykTz2xWmMeq6bk2NU3XXvfJ+Q61m0xktWwt+1HSYf3JZsTms3aRJg==", + "dev": true + }, "node_modules/@babel/generator": { "version": "7.25.7", "resolved": "https://registry.npmjs.org/@babel/generator/-/generator-7.25.7.tgz", @@ -358,6 +382,15 @@ "react": ">=18" } }, + "node_modules/@chakra-ui/icons": { + "version": "2.2.4", + "resolved": "https://registry.npmjs.org/@chakra-ui/icons/-/icons-2.2.4.tgz", + "integrity": "sha512-l5QdBgwrAg3Sc2BRqtNkJpfuLw/pWRDwwT58J6c4PqQT6wzXxyNa8Q0PForu1ltB5qEiFb1kxr/F/HO1EwNa6g==", + "peerDependencies": { + "@chakra-ui/react": ">=2.0.0", + "react": ">=18" + } + }, "node_modules/@chakra-ui/react": { "version": "2.10.3", "resolved": "https://registry.npmjs.org/@chakra-ui/react/-/react-2.10.3.tgz", @@ -460,22 +493,6 @@ "stylis": "4.2.0" } }, - 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"node_modules/standard/node_modules/escape-string-regexp": { - "version": "4.0.0", - "resolved": "https://registry.npmjs.org/escape-string-regexp/-/escape-string-regexp-4.0.0.tgz", - "integrity": "sha512-TtpcNJ3XAzx3Gq8sWRzJaVajRs0uVxA2YAkdb1jm2YkPz4G6egUFAyA3n5vtEIZefPk5Wa4UXbKuS5fKkJWdgA==", - "engines": { - "node": ">=10" - }, - "funding": { - "url": "https://github.com/sponsors/sindresorhus" - } - }, "node_modules/standard/node_modules/eslint": { "version": "8.57.1", "resolved": "https://registry.npmjs.org/eslint/-/eslint-8.57.1.tgz", @@ -6346,9 +6064,9 @@ } }, "node_modules/three-render-objects": { - "version": "1.29.5", - "resolved": "https://registry.npmjs.org/three-render-objects/-/three-render-objects-1.29.5.tgz", - "integrity": "sha512-OLtETrjF184NuaaI/vpRlIP9FxVNAgBBCgWYXhGFUDnPdl/2iX8rialUPGA1gEXvOTiKyepArVgm1LUkJw15rQ==", + "version": "1.30.0", + "resolved": "https://registry.npmjs.org/three-render-objects/-/three-render-objects-1.30.0.tgz", + "integrity": "sha512-46sckKM9VdsDuCe0u1W7BNME5RinDujuwLc2ANviw60f3uCc5pSlAb2fXGZwPz+vb7aq5AAZvHm94bTCkBk+pQ==", "dependencies": { "@tweenjs/tween.js": "18 - 25", "accessor-fn": "1", @@ -6538,14 +6256,14 @@ } }, "node_modules/typescript-eslint": { - "version": "8.9.0", - "resolved": "https://registry.npmjs.org/typescript-eslint/-/typescript-eslint-8.9.0.tgz", - "integrity": "sha512-AuD/FXGYRQyqyOBCpNLldMlsCGvmDNxptQ3Dp58/NXeB+FqyvTfXmMyba3PYa0Vi9ybnj7G8S/yd/4Cw8y47eA==", + "version": "8.10.0", + "resolved": "https://registry.npmjs.org/typescript-eslint/-/typescript-eslint-8.10.0.tgz", + "integrity": "sha512-YIu230PeN7z9zpu/EtqCIuRVHPs4iSlqW6TEvjbyDAE3MZsSl2RXBo+5ag+lbABCG8sFM1WVKEXhlQ8Ml8A3Fw==", "dev": true, "dependencies": { - "@typescript-eslint/eslint-plugin": "8.9.0", - "@typescript-eslint/parser": "8.9.0", - "@typescript-eslint/utils": "8.9.0" + "@typescript-eslint/eslint-plugin": "8.10.0", + "@typescript-eslint/parser": "8.10.0", + "@typescript-eslint/utils": "8.10.0" }, "engines": { "node": "^18.18.0 || ^20.9.0 || >=21.1.0" @@ -6585,6 +6303,12 @@ "node": ">=14.0" } }, + "node_modules/undici-types": { + "version": "6.19.8", + "resolved": "https://registry.npmjs.org/undici-types/-/undici-types-6.19.8.tgz", + "integrity": "sha512-ve2KP6f/JnbPBFyobGHuerC9g1FYGn/F8n1LWTwNxCEzd6IfqTwUQcNXgEtmmQ6DlRrC1hrSrBnCZPokRrDHjw==", + "dev": true + }, "node_modules/update-browserslist-db": { "version": "1.1.1", "resolved": "https://registry.npmjs.org/update-browserslist-db/-/update-browserslist-db-1.1.1.tgz", diff --git a/package.json b/package.json index d13d685..46d5a0b 100644 --- a/package.json +++ b/package.json @@ -1,7 +1,7 @@ { "name": "rdf-graph-visualization", "private": true, - "version": "0.0.0", + "version": "0.1.0", "type": "module", "scripts": { "dev": "vite", @@ -10,19 +10,25 @@ "preview": "vite preview" }, "dependencies": { + "@chakra-ui/icons": "^2.2.4", "@chakra-ui/react": "^2.10.3", "@emotion/react": "^11.13.3", "@emotion/styled": "^11.13.0", "@react-hook/resize-observer": "^2.0.2", + "csstype": "^3.1.3", "framer-motion": "^11.11.9", + "js-yaml": "^4.1.0", "rdflib": "^2.2.35", "react": "^18.3.1", "react-dom": "^18.3.1", "react-force-graph-3d": "^1.24.4", + "react-icons": "^5.3.0", "three": "^0.169.0" }, "devDependencies": { "@eslint/js": "^9.11.1", + "@types/js-yaml": "^4.0.9", + "@types/node": "^22.9.0", "@types/react": "^18.3.10", "@types/react-dom": "^18.3.0", "@types/three": "^0.169.0", @@ -35,5 +41,63 @@ "typescript": "^5.5.3", "typescript-eslint": "^8.7.0", "vite": "^5.4.8" + }, + "author": { + "name": "Mustafa Soylu", + "email": "m.soylu@fz-juelich.de", + "url": "https://orcid.org/0000-0003-2637-0432" + }, + "description": "Visualization of RDF graphs in Turtle format in 3D on the web.", + "keywords": [ + "rdf", + "graph", + "turtle", + "visualization" + ], + "maintainers": [ + { + "name": "Mustafa Soylu", + "email": "m.soylu@fz-juelich.de", + "url": "https://orcid.org/0000-0003-2637-0432" + } + ], + "license": "MIT", + "repository": { + "type": "git", + "url": "https://github.com/Materials-Data-Science-and-Informatics/rdf-graph-visualization" + }, + "contributors": [ + { + "name": "Mustafa Soylu", + "email": "m.soylu@fz-juelich.de", + "url": "https://orcid.org/0000-0003-2637-0432" + }, + { + "name": "Volker Hofmann", + "email": "v.hofmann@fz-juelich.de", + "url": "https://orcid.org/0000-0002-5149-603X" + }, + { + "name": "Stefan Sandfeld", + "email": "s.sandfeld@fz-juelich.de", + "url": "https://orcid.org/0000-0001-9560-4728" + }, + { + "name": "Said Fathalla", + "email": "s.fathalla@fz-juelich.de", + "url": "https://orcid.org/0000-0002-2818-5890" + } + ], + "homepage": "https://github.com/Materials-Data-Science-and-Informatics/rdf-graph-visualization", + "os": [ + "win32", + "linux", + "darwin" + ], + "optionalDependencies": { + "@lmdb/lmdb-linux-x64": "^3.0.13", + "@lmdb/lmdb-win32-x64": "^3.0.13", + "@rollup/rollup-win32-x64-msvc": "4.22.4", + "@rollup/rollup-linux-x64-gnu": "4.22.4" } } diff --git a/public/favicon.ico b/public/favicon.ico new file mode 100644 index 0000000..f6d3491 Binary files /dev/null and b/public/favicon.ico differ diff --git a/src/components/Content.tsx b/src/components/Content.tsx index 73a0653..e0ccf37 100644 --- a/src/components/Content.tsx +++ b/src/components/Content.tsx @@ -1,31 +1,60 @@ -// Content.tsx -import { Box } from "@chakra-ui/react"; +import { Box, Collapse, useDisclosure, Text, HStack, IconButton } from "@chakra-ui/react"; import Graph from "./Graph"; import Selections from "./Selections"; import { useState, useRef } from "react"; -import useResizeObserver from "@react-hook/resize-observer"; // Import the hook directly +import useResizeObserver from "@react-hook/resize-observer"; import { GraphData } from "react-force-graph-3d"; +import { CiSquareChevUp, CiSquareChevDown } from "react-icons/ci"; const Content = () => { + const [filteredGraphData, setFilteredGraphData] = useState({ nodes: [], links: [] }); const [graphData, setGraphData] = useState({ nodes: [], links: [] }); - const boxRef = useRef(null); // Create a ref for the Box - const [size, setSize] = useState({ width: 0, height: 0 }); // Initialize size state + const boxRef = useRef(null); + const [size, setSize] = useState({ width: 0, height: 0 }); + const { isOpen, onToggle } = useDisclosure({ defaultIsOpen: true }); - // Use useResizeObserver to monitor size changes useResizeObserver(boxRef, (entry) => { if (entry) { - const { width, height } = entry.contentRect; // Get the new width and height - setSize({ width, height }); // Update the size state + const { width, height } = entry.contentRect; + setSize({ width, height }); } }); return ( - - - + + + + + Configuration + + + {/* Button to toggle collapse */} + : } + aria-label="toogle configuration" + /> + + {/* Collapsible content */} + + + + + - - + + ); diff --git a/src/components/FilterSwitch.tsx b/src/components/FilterSwitch.tsx new file mode 100644 index 0000000..6705a99 --- /dev/null +++ b/src/components/FilterSwitch.tsx @@ -0,0 +1,38 @@ +import { FormControl, FormLabel, Switch } from "@chakra-ui/react"; +import * as React from "react"; + +interface FilterSwitchProps { + name: string; + filters: Set; + setFilters: React.Dispatch>>; + count?: number; +} + +const FilterSwitch = ({ name, filters, setFilters, count }: FilterSwitchProps) => { + const isChecked = !filters.has(name); + + const handleChange = (event: React.ChangeEvent) => { + if (!event.target.checked) { + setFilters(new Set(filters).add(name)); + } else { + filters.delete(name); + setFilters(new Set(filters)); + } + }; + + const title = () => { + if (count) { + return `${name} (${count})`; + } + return `${name} (0)`; + }; + + return ( + + {title()} + + + ); +}; + +export default FilterSwitch; diff --git a/src/components/Footer.tsx b/src/components/Footer.tsx new file mode 100644 index 0000000..213b805 --- /dev/null +++ b/src/components/Footer.tsx @@ -0,0 +1,81 @@ +import { Box, Flex, Link, Text, UnorderedList, ListItem } from "@chakra-ui/react"; +import { FaLinkedin, FaMastodon, FaTwitter, FaEnvelope, FaGithub } from "react-icons/fa"; + +type IconType = "linkedin" | "mastodon" | "x" | "mattermost" | "mail"; + +const Footer = () => { + const contact: { type: IconType; link: string }[] = [ + { + type: "linkedin", + link: "https://www.linkedin.com/company/helmholtz-metadata-collaboration-hmc/", + }, + { type: "mastodon", link: "https://helmholtz.social/@helmholtz_hmc" }, + { type: "x", link: "https://x.com/helmholtz_hmc" }, + { type: "mattermost", link: "https://mattermost.hzdr.de/hmc-public" }, + { type: "mail", link: "mailto:m.soylu@fz-juelich.de" }, + ]; + + const iconComponents: Record = { + linkedin: , + mastodon: , + x: , + mattermost: , + mail: , + }; + + return ( + + + + + + + + + + Research for grand challenges. + + + + + + {contact.map((item, index) => ( + + + {iconComponents[item.type]} + + + ))} + + + + + + + + Imprint + + + + + Contact + + + + © {new Date().getFullYear()} Forschungszentrum Jülich + + + + ); +}; + +export default Footer; diff --git a/src/components/FullScreenButton.tsx b/src/components/FullScreenButton.tsx new file mode 100644 index 0000000..ac33c8e --- /dev/null +++ b/src/components/FullScreenButton.tsx @@ -0,0 +1,23 @@ +import { Flex, IconButton } from "@chakra-ui/react"; +import * as React from "react"; +import { RiFullscreenLine } from "react-icons/ri"; +import { RiFullscreenExitLine } from "react-icons/ri"; + +interface FullScreenButtonProps { + isFullScreen: boolean; + setIsFullScreen: (isFullScreen: boolean) => void; +} + +const FullScreenButton: React.FC = ({ isFullScreen, setIsFullScreen }) => { + return ( + + : } + onClick={() => setIsFullScreen(!isFullScreen)} + /> + + ); +}; + +export default FullScreenButton; diff --git a/src/components/Graph.tsx b/src/components/Graph.tsx index 7928116..45bb7e8 100644 --- a/src/components/Graph.tsx +++ b/src/components/Graph.tsx @@ -1,8 +1,13 @@ -// Graph.tsx -import React from "react"; +import * as React from "react"; import ForceGraph3D, { GraphData, NodeObject, LinkObject } from "react-force-graph-3d"; import * as THREE from "three"; - +import { Box } from "@chakra-ui/react"; +import Legend from "./Legend.tsx"; +import { getGroupColor } from "../utils"; +import FullScreenButton from "./FullScreenButton.tsx"; +import { useCallback, useEffect, useRef, useState } from "react"; +import ResetViewButton from "./ResetViewButton.tsx"; +import ThemeSwitch from "./ThemeSwitch.tsx"; interface GraphProps { graphData: GraphData; width: number; @@ -10,52 +15,114 @@ interface GraphProps { } const Graph: React.FC = ({ graphData, width, height }) => { - const getGroupColor = (group: string) => { - const colors: { [key: string]: string } = { - person: "red", - dataset: "blue", - organization: "green", - software: "yellow", - document: "orange", - article: "indigo", - creativeWork: "violet", - service: "cyan", - "": "gray", // Default group - }; - return colors[group] || "gray"; // Default to gray if group not found - }; + const [isFullScreen, setIsFullScreen] = useState(false); + const [graphWidth, setGraphWidth] = useState(width); + const [graphHeight, setGraphHeight] = useState(height); + const [switchOn, setSwitchOn] = useState(false); + + const fgRef = useRef(null); + const labelColor = switchOn ? "#000000" : "#ffffff"; // Black on white background, white on dark + + const handleClick = useCallback( + (node: NodeObject) => { + if (!node || node.x === undefined || node.y === undefined || node.z === undefined) return; + if (!fgRef.current) return; + + const distance = 80; + const distRatio = 1 + distance / Math.hypot(node.x, node.y, node.z); + + fgRef.current.cameraPosition( + { x: node.x * distRatio, y: node.y * distRatio, z: node.z * distRatio }, + node, + 2000 + ); + }, + [fgRef] + ); + + useEffect(() => { + if (isFullScreen) { + setGraphWidth(window.innerWidth); + setGraphHeight(window.innerHeight); + } else { + setGraphWidth(width); + setGraphHeight(height); + } + }, [isFullScreen, width, height]); - const getNodeById = (id: string) => graphData.nodes.find((node: NodeObject) => node.id === id); + const handleResetView = () => { + if (!fgRef.current || !graphData?.nodes?.length) return; + + // Calculate bounding box of all nodes + const nodes = graphData.nodes; + const minX = Math.min(...nodes.map((node) => node.x ?? 0)); + const maxX = Math.max(...nodes.map((node) => node.x ?? 0)); + const minY = Math.min(...nodes.map((node) => node.y ?? 0)); + const maxY = Math.max(...nodes.map((node) => node.y ?? 0)); + const minZ = Math.min(...nodes.map((node) => node.z ?? 0)); + const maxZ = Math.max(...nodes.map((node) => node.z ?? 0)); + + // Calculate the center of the bounding box + const centerX = (minX + maxX) / 2; + const centerY = (minY + maxY) / 2; + const centerZ = (minZ + maxZ) / 2; + + // Calculate the size of the bounding box + const sizeX = maxX - minX; + const sizeY = maxY - minY; + const sizeZ = maxZ - minZ; + + // Set distance based on the largest dimension of the bounding box + const distance = Math.max(sizeX, sizeY, sizeZ) * 1.25; + + // Look at the calculated center from the calculated distance + fgRef.current.cameraPosition( + { x: centerX, y: centerY, z: centerZ + distance }, // position camera at the calculated distance + { x: centerX, y: centerY, z: centerZ }, // look at the center of the graph + 3000 // duration of the transition (in ms) + ); + }; return ( - getGroupColor(d.group || "")} - linkAutoColorBy={(d) => { - const sourceNode = - typeof d.source === "object" ? d.source : getNodeById(d.source?.toString() ?? ""); - return getGroupColor(sourceNode?.group || ""); - }} - linkWidth={2} - nodeLabel={(d) => `${(d as NodeObject).label || (d as NodeObject).id}`} // Show the label or fallback to id - linkLabel={(d) => `${(d as LinkObject).label}`} // Show the label for links - linkDirectionalArrowLength={2.5} - linkDirectionalArrowRelPos={1} - linkCurvature={0.2} - nodeThreeObject={({ group }) => { - const geometry = - group === "" ? new THREE.BoxGeometry(8, 8, 8) : new THREE.SphereGeometry(5); - - const material = new THREE.MeshStandardMaterial({ - color: getGroupColor(group), - roughness: 0.7, - }); - - return new THREE.Mesh(geometry, material); - }} - /> + + `${node.label || node.id}`} + linkLabel={(d: LinkObject) => `${d.label}`} + linkDirectionalArrowLength={7} + linkDirectionalArrowRelPos={1} + linkCurvature={0.3} + linkOpacity={0.5} + linkWidth={5} + backgroundColor={switchOn ? "#ffffff" : "#000000"} + nodeThreeObject={({ group }) => { + const geometry = + group === "" ? new THREE.BoxGeometry(8, 8, 8) : new THREE.SphereGeometry(5); + + const material = new THREE.MeshStandardMaterial({ + color: getGroupColor(group), + roughness: 0.7, + }); + + return new THREE.Mesh(geometry, material); + }} + onNodeClick={handleClick} + /> + + + + + ); }; diff --git a/src/components/Layout.tsx b/src/components/Layout.tsx index c385341..8d9b336 100644 --- a/src/components/Layout.tsx +++ b/src/components/Layout.tsx @@ -1,6 +1,7 @@ import { Box, Flex, useBreakpointValue } from "@chakra-ui/react"; import { ReactNode } from "react"; import Navbar from "./Navbar"; +import Footer from "./Footer"; interface LayoutProps { children: ReactNode; @@ -14,12 +15,19 @@ export default function Layout({ children }: LayoutProps) { }); return ( - + - + {children} - {/*