{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":477687892,"defaultBranch":"master","name":"rnaseq","ownerLogin":"MatthiasZepper","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2022-04-04T12:19:59.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/6963520?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1720790436.0","currentOid":""},"activityList":{"items":[{"before":"1c7566973d40c6bae6bd572cd840c0317d29cf4f","after":null,"ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-12T13:20:36.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"}},{"before":"d2d21cffc705f71113466700b95ccbd0d268eb43","after":"1c7566973d40c6bae6bd572cd840c0317d29cf4f","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-11T17:38:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Fix prefixes for FASTQC","shortMessageHtmlLink":"Fix prefixes for FASTQC"}},{"before":"8e42ab11714bdb7e06347236911f92f22d02bec5","after":"d2d21cffc705f71113466700b95ccbd0d268eb43","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-11T12:47:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Update module for snapshot fix","shortMessageHtmlLink":"Update module for snapshot fix"}},{"before":"923021636532495fb887fa474db6e380d9a7f158","after":"8e42ab11714bdb7e06347236911f92f22d02bec5","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-11T10:23:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Update dupradar from modules repo and remove patch.","shortMessageHtmlLink":"Update dupradar from modules repo and remove patch."}},{"before":"1931c057f66c3a17725f5809219f868a22fccca4","after":"923021636532495fb887fa474db6e380d9a7f158","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-10T18:00:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Update MultiQC to v1.23","shortMessageHtmlLink":"Update MultiQC to v1.23"}},{"before":"4555a2786ca3b4739031a4e393a004b935303756","after":"1931c057f66c3a17725f5809219f868a22fccca4","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-10T12:21:56.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Correct the diff","shortMessageHtmlLink":"Correct the diff"}},{"before":"4dc5b67d2cabe50b38c574c4228a69f8427bdcc6","after":"4555a2786ca3b4739031a4e393a004b935303756","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-09T16:17:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Undo changes to modules/nf-core/dupradar/templates/dupradar.r from Harshil Patel and me, since they should be fixed upstream in the modules directory. Reset state of file to cc1bf2ca221865de5142dbf8f9217f7593097526.","shortMessageHtmlLink":"Undo changes to modules/nf-core/dupradar/templates/dupradar.r from Ha…"}},{"before":"6178e8cfa543cd1ef28d459b0ede11690c36fbc7","after":"4dc5b67d2cabe50b38c574c4228a69f8427bdcc6","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-04T09:45:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Changelog","shortMessageHtmlLink":"Changelog"}},{"before":"0031778cf90fb5f010a81682082a634f09adbc5f","after":"6178e8cfa543cd1ef28d459b0ede11690c36fbc7","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-04T09:40:32.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Linting","shortMessageHtmlLink":"Linting"}},{"before":"b901cbeb7d415a078ee21013e3210359edbd39c8","after":"1af00b93bd59f7f4e287085a2d6b95bf79a6276d","ref":"refs/heads/dev","pushedAt":"2024-07-04T09:38:52.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Merge pull request #1334 from maxulysse/stubs\n\nWIP: Adding stubs everywhere","shortMessageHtmlLink":"Merge pull request nf-core#1334 from maxulysse/stubs"}},{"before":"3ad2adf92f10097631634295b7244197c1869ee5","after":"0031778cf90fb5f010a81682082a634f09adbc5f","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-03T12:23:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Linting","shortMessageHtmlLink":"Linting"}},{"before":"c0057013e6843e51ee43c2572847c1164973b118","after":"3ad2adf92f10097631634295b7244197c1869ee5","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-02T16:55:53.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"@aanil (Anandashankar Anil) correctly pointed out that some MultiQC configuration parameters used in the config were deprecated.","shortMessageHtmlLink":"@aanil (Anandashankar Anil) correctly pointed out that some MultiQC c…"}},{"before":"21095f381e70b4b73dc392c36318218044a8bc95","after":"b901cbeb7d415a078ee21013e3210359edbd39c8","ref":"refs/heads/dev","pushedAt":"2024-07-02T16:40:05.000Z","pushType":"push","commitsCount":144,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Merge pull request #1331 from maxulysse/dev\n\nadd stub for local modules","shortMessageHtmlLink":"Merge pull request nf-core#1331 from maxulysse/dev"}},{"before":"39077053c445c06738860ba219c8711ddc309768","after":"c0057013e6843e51ee43c2572847c1164973b118","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-02T16:36:53.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"@aanil (Anandashankar Anil) correctly pointed out that some MultiQC configuration parameters used in the config were deprecated.","shortMessageHtmlLink":"@aanil (Anandashankar Anil) correctly pointed out that some MultiQC c…"}},{"before":"49ec38f181a580e1415b25e2ba412997750101ba","after":"39077053c445c06738860ba219c8711ddc309768","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-02T16:06:51.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"@aanil (Anandashankar Anil) correctly pointed out that some MultiQC configuration parameters used in the config were deprecated.","shortMessageHtmlLink":"@aanil (Anandashankar Anil) correctly pointed out that some MultiQC c…"}},{"before":"aecde62edd9e6586dc8603a2568cdb4a71a6d563","after":"49ec38f181a580e1415b25e2ba412997750101ba","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-07-02T14:43:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"@aanil (Anandashankar Anil) correctly pointed out that some MultiQC configuration parameters used in the config were deprecated.","shortMessageHtmlLink":"@aanil (Anandashankar Anil) correctly pointed out that some MultiQC c…"}},{"before":"18d49f2e71267fae3917dbe03755945da95aabad","after":"aecde62edd9e6586dc8603a2568cdb4a71a6d563","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-06-20T13:54:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Mark FASTQC outputs with suffixes","shortMessageHtmlLink":"Mark FASTQC outputs with suffixes"}},{"before":"0e3a91d954a1e6f37ee089d6bac069839ab6e854","after":"18d49f2e71267fae3917dbe03755945da95aabad","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-06-11T15:31:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"The output channel of fastq_fastqc_umitools_trimgalore/fastp is called 'umi_log' and not 'log'. The meta.yml is wrong.","shortMessageHtmlLink":"The output channel of fastq_fastqc_umitools_trimgalore/fastp is calle…"}},{"before":"a69cc67ea34d6b7d097ad2e92f940e211bd02db5","after":"0e3a91d954a1e6f37ee089d6bac069839ab6e854","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-06-11T13:52:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Publish the UMI-tools extract logs for MultiQC.","shortMessageHtmlLink":"Publish the UMI-tools extract logs for MultiQC."}},{"before":"ac748697eb3184ab7b375fa19811c4011c1b0ba9","after":"a69cc67ea34d6b7d097ad2e92f940e211bd02db5","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-06-10T20:05:18.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Update MultiQC module in pipeline.","shortMessageHtmlLink":"Update MultiQC module in pipeline."}},{"before":"340cfa78f99bcd1c41116b29aa8a4aca95eea5e1","after":"ac748697eb3184ab7b375fa19811c4011c1b0ba9","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-06-10T19:53:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Update bam_dedup_stats_samtools_umitools subworkflow and MultiQC module.","shortMessageHtmlLink":"Update bam_dedup_stats_samtools_umitools subworkflow and MultiQC module."}},{"before":"cde1635c3a40823d44b9fed85bca5f74a9c84724","after":"340cfa78f99bcd1c41116b29aa8a4aca95eea5e1","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-06-05T16:49:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Modify subworkflow bam_dedup_stats_samtools_umitools to publish dedup logs.","shortMessageHtmlLink":"Modify subworkflow bam_dedup_stats_samtools_umitools to publish dedup…"}},{"before":"68d414ee5eebde6eff71b0f1413fc2fce69a40a3","after":"cde1635c3a40823d44b9fed85bca5f74a9c84724","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-06-05T16:21:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Publish logfiles from umi-tools dedup steps.","shortMessageHtmlLink":"Publish logfiles from umi-tools dedup steps."}},{"before":"b1e764c715deef6245f8f4c8573777435ac80262","after":"68d414ee5eebde6eff71b0f1413fc2fce69a40a3","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-06-03T17:15:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Use the correct module names to supress the Percent Duplicate column in the General Stats table of MultiQC.","shortMessageHtmlLink":"Use the correct module names to supress the Percent Duplicate column …"}},{"before":"b5c7e3e314db48333475949334110d847ddd5c30","after":"b1e764c715deef6245f8f4c8573777435ac80262","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-06-03T14:30:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Linting.","shortMessageHtmlLink":"Linting."}},{"before":"e75b8751989aa3ec90702ae1970c4c64847eb7db","after":"b5c7e3e314db48333475949334110d847ddd5c30","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-06-03T12:32:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Patch MultiQC module to version 1.22.2","shortMessageHtmlLink":"Patch MultiQC module to version 1.22.2"}},{"before":"5a8912a97f0b1a39026c9f8ce7b1878b01b7fcdf","after":"e75b8751989aa3ec90702ae1970c4c64847eb7db","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-06-03T12:24:53.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"MultiQC config updates.","shortMessageHtmlLink":"MultiQC config updates."}},{"before":"e0b41b41ebeced5d28d12882359e320bf371c5a7","after":"21095f381e70b4b73dc392c36318218044a8bc95","ref":"refs/heads/dev","pushedAt":"2024-06-03T12:24:12.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"Merge pull request #1304 from nf-core/no_extra_tpms\n\nRemove redundant gene TPM outputs","shortMessageHtmlLink":"Merge pull request nf-core#1304 from nf-core/no_extra_tpms"}},{"before":"87e3f56eb28d37606dd8460894c46b46761ef7fb","after":"5a8912a97f0b1a39026c9f8ce7b1878b01b7fcdf","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-05-29T19:36:27.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"MultiQC config updates.","shortMessageHtmlLink":"MultiQC config updates."}},{"before":"2fe53060e1d067a8e444dda285ca83947bfee603","after":"87e3f56eb28d37606dd8460894c46b46761ef7fb","ref":"refs/heads/MultiQC_FastQC_bug","pushedAt":"2024-05-29T19:09:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MatthiasZepper","name":"Matthias Zepper","path":"/MatthiasZepper","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6963520?s=80&v=4"},"commit":{"message":"MultiQC config updates.","shortMessageHtmlLink":"MultiQC config updates."}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEfeF0LgA","startCursor":null,"endCursor":null}},"title":"Activity · MatthiasZepper/rnaseq"}