Skip to content
The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline
Python Groovy Tcl Shell HTML
Branch: master
Clone or download

Latest commit

Fetching latest commit…
Cannot retrieve the latest commit at this time.

Files

Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
batches
designs
hg19
pipeline update default config values to match current software set Feb 26, 2016
tmpdata
tools
.gitignore
GPLv3.txt
LICENSE
README.md
bpipe
version.txt

README.md

Cpipe

Cpipe is a clinically focused exome sequencing pipeline developed by the Melbourne Genomics Health Alliance. Cpipe offers an industry standard variant calling pipeline with a suite of additional features needed by diagnostic laboratories added on top.

To set up Cpipe, clone this repository and then run the install script:

git clone https://github.com/MelbourneGenomics/cpipe.git
cd cpipe
./pipeline/scripts/install.sh

For further instructions, take a look at the User Guide.

You can’t perform that action at this time.