From 046e0bfa3892e83b2260bcaae69588c53ce3459a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jan=20B=C3=ADma?= <bima@merck.com>
Date: Tue, 31 Jan 2023 02:12:56 +0100
Subject: [PATCH] bump version

---
 Project.toml                  |  2 +-
 src/loadsave.jl               | 26 +++++++++++++++-----------
 tutorial/loadsave/loadsave.jl |  5 +++--
 3 files changed, 19 insertions(+), 14 deletions(-)

diff --git a/Project.toml b/Project.toml
index a58c715..e724b65 100644
--- a/Project.toml
+++ b/Project.toml
@@ -1,6 +1,6 @@
 name = "ReactiveDynamics"
 uuid = "c7456e7d-545a-4b79-91ea-6e93d96dd4d4"
-version = "0.2.4"
+version = "0.2.5"
 
 [deps]
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
diff --git a/src/loadsave.jl b/src/loadsave.jl
index 628c947..8263166 100644
--- a/src/loadsave.jl
+++ b/src/loadsave.jl
@@ -14,7 +14,7 @@ const RN_attrs = string.(propertynames(ReactionNetwork().subparts))
 
 function get_attrs(object)
     object = object isa Symbol ? objects_aliases[object] : object
-    
+
     filter(x -> occursin(object, x), RN_attrs)
 end
 
@@ -67,12 +67,15 @@ function load_network(dict::Dict)
 end
 
 function import_network_csv(pathmap)
-    dict = Dict(); for (key, paths) in pathmap
+    dict = Dict()
+    for (key, paths) in pathmap
         push!(dict, key => [])
         for path in paths
-            data = DataFrame(CSV.File(path; delim=";;", types=String, stripwhitespace=true, comment="#"))
+            data = DataFrame(CSV.File(path; delim = ";;", types = String,
+                                      stripwhitespace = true, comment = "#"))
             for row in eachrow(data)
-                object = Dict(); for (attr, val) in Iterators.zip(keys(row), values(row))
+                object = Dict()
+                for (attr, val) in Iterators.zip(keys(row), values(row))
                     !ismissing(val) && push!(object, string(attr) => val)
                 end
                 push!(dict[key], object)
@@ -85,8 +88,9 @@ end
 
 function import_network(path::AbstractString)
     if splitext(path)[2] == ".csv"
-        pathmap = Dict(val => [] for val in [collect(values(objects_aliases)); "registered"])
-        for row in CSV.File(path; delim=";;", stripwhitespace=true, comment="#")
+        pathmap = Dict(val => []
+                       for val in [collect(values(objects_aliases)); "registered"])
+        for row in CSV.File(path; delim = ";;", stripwhitespace = true, comment = "#")
             push!(pathmap[row.type], joinpath(dirname(path), row.path))
         end
 
@@ -96,7 +100,6 @@ function import_network(path::AbstractString)
     end
 end
 
-
 function export_network(acs::ReactionNetwork, path::AbstractString)
     if splitext(path)[2] == ".csv"
         exported_network = export_network(acs)
@@ -105,18 +108,19 @@ function export_network(acs::ReactionNetwork, path::AbstractString)
             push!(paths, (key, "export-$key.csv"))
             objs_exported = DataFrame(Dict(attr => [] for attr in get_attrs(key)))
             for obj in objs
-                push!(objs_exported, [get(obj, key, missing) for key in names(objs_exported)])
+                push!(objs_exported,
+                      [get(obj, key, missing) for key in names(objs_exported)])
             end
 
-            CSV.write(joinpath(dirname(path), "export-$key.csv"), objs_exported, delim=";;")
+            CSV.write(joinpath(dirname(path), "export-$key.csv"), objs_exported,
+                      delim = ";;")
         end
-        CSV.write(path, paths, delim=";;")
+        CSV.write(path, paths, delim = ";;")
     else
         open(io -> TOML.print(io, export_network(acs)), path, "w+")
     end
 end
 
-
 """
 Export model to a file: this can be either a single TOML file encoding the entire model,
 or a batch of CSV files (a root file and a number of files, each per a class of objects).
diff --git a/tutorial/loadsave/loadsave.jl b/tutorial/loadsave/loadsave.jl
index 98c35a6..1a3f51b 100644
--- a/tutorial/loadsave/loadsave.jl
+++ b/tutorial/loadsave/loadsave.jl
@@ -21,7 +21,8 @@ sol_ = @solve prob_ trajectories=20
 
 # export the same model (w/o registered functions)
 @export_network sir_acs modell.toml
-mkpath("csv_"); @export_network sir_acs "csv_/model.csv"
+mkpath("csv_");
+@export_network sir_acs "csv_/model.csv";
 
 # load multiple models
 @load_models models.txt
@@ -31,4 +32,4 @@ mkpath("csv_"); @export_network sir_acs "csv_/model.csv"
 @export_solution_as_csv sol sol.csv
 
 # another test
-@import_network model2.toml sir_acs_2
\ No newline at end of file
+@import_network model2.toml sir_acs_2