_____ ____ ____ ____ | _ \ ___ ___ ____ | __ ) / ___) / ___) | | \ \/ _ \/ _ \ _ \| _ \ | | _ | | | |_/ / __/ __/ |_) | |_) || |_| || |___ |____/ \___|\___| ___/|____/ \____| \____) =================|_|===== version 0.1.21 ===== INFO 26/11 17:37:37 Available data files: ['Pfam-A.31.0.hmm', 'Pfam-A.31.0.hmm.h3i', 'Pfam-A.31.0.hmm.h3m', 'Pfam-A.31.0.hmm.h3f', 'Pfam-A.31.0.hmm.h3p', 'Pfam-A.31.0.clans.tsv'] INFO 26/11 17:37:37 ================================================================================ INFO 26/11 17:37:37 Available detectors: ['deepbgc', 'clusterfinder_original', 'clusterfinder_retrained', 'clusterfinder_geneborder'] INFO 26/11 17:37:37 -------------------------------------------------------------------------------- INFO 26/11 17:37:37 Model: deepbgc INFO 26/11 17:37:37 Loading model from: /export/home/andrespara/.local/share/deepbgc/data/0.1.0/detector/deepbgc.pkl Using TensorFlow backend. /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:516: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. _np_qint8 = np.dtype([("qint8", np.int8, 1)]) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:517: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. _np_quint8 = np.dtype([("quint8", np.uint8, 1)]) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:518: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. _np_qint16 = np.dtype([("qint16", np.int16, 1)]) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:519: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. _np_quint16 = np.dtype([("quint16", np.uint16, 1)]) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:520: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. _np_qint32 = np.dtype([("qint32", np.int32, 1)]) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:525: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. np_resource = np.dtype([("resource", np.ubyte, 1)]) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:541: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. _np_qint8 = np.dtype([("qint8", np.int8, 1)]) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:542: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. _np_quint8 = np.dtype([("quint8", np.uint8, 1)]) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:543: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. _np_qint16 = np.dtype([("qint16", np.int16, 1)]) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:544: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. _np_quint16 = np.dtype([("quint16", np.uint16, 1)]) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:545: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. _np_qint32 = np.dtype([("qint32", np.int32, 1)]) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:550: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'. np_resource = np.dtype([("resource", np.ubyte, 1)]) WARNING 26/11 17:37:40 From /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:66: The name tf.get_default_graph is deprecated. Please use tf.compat.v1.get_default_graph instead. WARNING 26/11 17:37:40 From /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:541: The name tf.placeholder is deprecated. Please use tf.compat.v1.placeholder instead. WARNING 26/11 17:37:40 From /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:4432: The name tf.random_uniform is deprecated. Please use tf.random.uniform instead. WARNING 26/11 17:37:40 From /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:148: The name tf.placeholder_with_default is deprecated. Please use tf.compat.v1.placeholder_with_default instead. WARNING 26/11 17:37:40 From /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:3733: calling dropout (from tensorflow.python.ops.nn_ops) with keep_prob is deprecated and will be removed in a future version. Instructions for updating: Please use `rate` instead of `keep_prob`. Rate should be set to `rate = 1 - keep_prob`. WARNING 26/11 17:37:41 From /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:190: The name tf.get_default_session is deprecated. Please use tf.compat.v1.get_default_session instead. INFO 26/11 17:37:41 Type: KerasRNN INFO 26/11 17:37:41 Version: 0.1.0 INFO 26/11 17:37:41 Timestamp: 1551305667.986168 (2019-02-27T19:14:27.986168) INFO 26/11 17:37:41 -------------------------------------------------------------------------------- INFO 26/11 17:37:41 Model: clusterfinder_original INFO 26/11 17:37:41 Loading model from: /export/home/andrespara/.local/share/deepbgc/data/0.1.0/detector/clusterfinder_original.pkl WARNING 26/11 17:37:41 Model not supported: ('Package "hmmlearn" needs to be installed to run ClusterFinder HMM. ', 'Install extra dependencies using: \n pip install "deepbgc[hmm]"') INFO 26/11 17:37:41 -------------------------------------------------------------------------------- INFO 26/11 17:37:41 Model: clusterfinder_retrained INFO 26/11 17:37:41 Loading model from: /export/home/andrespara/.local/share/deepbgc/data/0.1.0/detector/clusterfinder_retrained.pkl WARNING 26/11 17:37:41 Model not supported: ('Package "hmmlearn" needs to be installed to run ClusterFinder HMM. ', 'Install extra dependencies using: \n pip install "deepbgc[hmm]"') INFO 26/11 17:37:41 -------------------------------------------------------------------------------- INFO 26/11 17:37:41 Model: clusterfinder_geneborder INFO 26/11 17:37:41 Loading model from: /export/home/andrespara/.local/share/deepbgc/data/0.1.0/detector/clusterfinder_geneborder.pkl WARNING 26/11 17:37:41 Model not supported: ('Package "hmmlearn" needs to be installed to run ClusterFinder HMM. ', 'Install extra dependencies using: \n pip install "deepbgc[hmm]"') INFO 26/11 17:37:41 ================================================================================ INFO 26/11 17:37:41 Available classifiers: ['product_activity', 'product_class'] INFO 26/11 17:37:41 -------------------------------------------------------------------------------- INFO 26/11 17:37:41 Model: product_activity INFO 26/11 17:37:41 Loading model from: /export/home/andrespara/.local/share/deepbgc/data/0.1.0/classifier/product_activity.pkl /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/sklearn/utils/deprecation.py:143: FutureWarning: The sklearn.ensemble.forest module is deprecated in version 0.22 and will be removed in version 0.24. The corresponding classes / functions should instead be imported from sklearn.ensemble. Anything that cannot be imported from sklearn.ensemble is now part of the private API. warnings.warn(message, FutureWarning) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/sklearn/utils/deprecation.py:143: FutureWarning: The sklearn.tree.tree module is deprecated in version 0.22 and will be removed in version 0.24. The corresponding classes / functions should instead be imported from sklearn.tree. Anything that cannot be imported from sklearn.tree is now part of the private API. warnings.warn(message, FutureWarning) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/sklearn/base.py:334: UserWarning: Trying to unpickle estimator DecisionTreeClassifier from version 0.18.2 when using version 0.23.2. This might lead to breaking code or invalid results. Use at your own risk. UserWarning) /mnt/ubi/andres/miniconda3/envs/deepbio/lib/python3.7/site-packages/sklearn/base.py:334: UserWarning: Trying to unpickle estimator RandomForestClassifier from version 0.18.2 when using version 0.23.2. This might lead to breaking code or invalid results. Use at your own risk. UserWarning) INFO 26/11 17:37:42 Type: RandomForestClassifier INFO 26/11 17:37:42 Version: 0.1.0 INFO 26/11 17:37:42 Timestamp: 1551781433.886473 (2019-03-05T07:23:53.886473) INFO 26/11 17:37:42 -------------------------------------------------------------------------------- INFO 26/11 17:37:42 Model: product_class INFO 26/11 17:37:42 Loading model from: /export/home/andrespara/.local/share/deepbgc/data/0.1.0/classifier/product_class.pkl INFO 26/11 17:37:42 Type: RandomForestClassifier INFO 26/11 17:37:42 Version: 0.1.0 INFO 26/11 17:37:42 Timestamp: 1551781410.019103 (2019-03-05T07:23:30.019103) INFO 26/11 17:37:42 ================================================================================ WARNING 26/11 17:37:42 Some warnings detected, check the output above