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Merge pull request #75 from MesquiteProject/development

Version 3.31 build 859
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wmaddisn committed Sep 20, 2017
2 parents 68f815d + 4aef83d commit 8a39ed395dabb4636334f84fdeae921ed38471ec
@@ -1774,7 +1774,7 @@ else if (checker.compare(this.getClass(), "Crashes with a NullPointerException",
logln("This will crash: " +mi.getValue());
}
else if (checker.compare(this.getClass(), "Checks for notices or installs at the location specified", null, commandName, "checkNotices")) {
noticeLocation = MesquiteString.queryString(containerOfModule(), "Notices Location", "Indicate URL to notices file to be checked. (For instance, for Mesquite the default notices file is at " + getHomePhoneNumber() + ")", noticeLocation);
noticeLocation = MesquiteString.queryString(containerOfModule(), "Notices Location", "Indicate URL to notices file to be checked. (For instance, for Mesquite the default notices file is at " + getHomePhoneNumber() + ")\n\nNote: There may be a delay as Mesquite waits for the response from the server.", noticeLocation);
PhoneHomeUtil.checkForNotices(noticeLocation);
PhoneHomeUtil.adHocRecord = null;
resetAllMenuBars();
@@ -86,7 +86,7 @@ public final static String getBuildLetter() {
public final static int getBuildNumber() {
//as of 26 Dec 08, build naming changed from letter + number to just number. Accordingly j105 became 473, based on
// highest build numbers of d51+e81+g97+h66+i69+j105 + 3 for a, b, c
return 858;
return 859;
}
//0.95.80 14 Mar 01 - first beta release
//0.96 2 April 01 beta - second beta release
@@ -499,7 +499,7 @@ private static String handleMessages(boolean adHoc, String noticesFromHome, Mesq
int lastNotice = phoneHomeRecord.getLastNotice();
int lastVersionNoticed = phoneHomeRecord.getLastVersionNoticed();
String name = mmi.getName();
//String name = mmi.getName();
Element root = XMLUtil.getRootXMLElementFromString("mesquite",noticesFromHome);
if (root==null)
@@ -1,101 +1,109 @@
<?xml version="1.0"?>
<mesquite>
<lastnoticeNumber>19</lastnoticeNumber>
<lastnoticeNumber>20</lastnoticeNumber>
<MessagesFromHome>
<version>1</version>
<currentReleaseVersion>
<versionString>3.31</versionString>
<build>858</build>
<build>859</build>
<version>331</version>
<downloadURL>http://mesquiteproject.wikispaces.com/Installation</downloadURL>
</currentReleaseVersion>
<notice>
<forVersion>331</forVersion>
<forBuildNumberExactly>858</forBuildNumberExactly>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[A new build of this version Mesquite is available, to fix a bug in installing separate packages. You can download it
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>330</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[A new version of Mesquite is available, version 3.31, with various bug fixes. We urge that you update to the new version by downloading it from
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>320</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[A new version of Mesquite is available, version 3.31, with various bug fixes, performance improvements, and new features. We strongly urge that you update to the new version by downloading it from
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>311</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[A new version of Mesquite is available, version 3.31, with various bug fixes, performance improvements, and new features. We strongly urge that you update to the new version by downloading it from
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>310</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[Your version of Mesquite has bugs in how it writes codon positions of sequence matrices. There is an update available to solve this, version 3.31. We strongly urge that you update to a new version by downloading it from
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>304</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[You are using an old version of Mesquite. The current version is 3.31. We strongly urge that you update to a new version by downloading it from
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>303</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[You are using an old version of Mesquite. The current version is 3.31. We strongly urge that you update to a new version by downloading it from
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>302</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[You are using an old version of Mesquite. The current version is 3.31. We strongly urge that you update to a new version by downloading it from
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>301</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[You are using an old version of Mesquite. The current version is 3.31. We strongly urge that you update to a new version by downloading it from
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>300</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[You are using an <b>OLD</b> version of Mesquite. The current version is 3.31. We strongly urge that you update to a new version by downloading it from
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>273</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[You are using a <b>VERY OLD</b> version of Mesquite. The current version is 3.31. We strongly urge that you update to a new version by downloading it from
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>274</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[You are using a <b>VERY OLD</b> version of Mesquite. The current version is 3.31. We strongly urge that you update to a new version by downloading it from
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>275</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message><![CDATA[You are using a <b>VERY VERY OLD</b> version of Mesquite. The current version is 3.31. We strongly urge that you update to a new version by downloading it from
<a href = "http://github.com/MesquiteProject/MesquiteCore/releases">here</a>]]></message>
</notice>
<notice>
<forVersion>201</forVersion>
<noticeNumber>20</noticeNumber>
<noticeNumber>21</noticeNumber>
<messageType>alert</messageType>
<message>This notice is to inform you that Mesquite now checks its web site for notices to users (such as this one) when it starts up. This should not cause a delay (if it does, please inform us). We anticipate notices will be given rarely, when there is an update available or an important bug to tell you about.</message>
</notice>

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