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- +1 −0 README.md
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- +49 −0 Resources/Tests/Midford_OU/OUtransformedV_LBW1.txt
- +1 −0 Resources/Tests/Midford_OU/TREE.BRK
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- +317 −0 Resources/pdap_examples/misc examples/IndependentContrastsExample.nex
- +202 −0 buildfiles/build.xml
- +1 −0 src/mesquite/pdap/Alog10TransformChar/Alog10TransformChar.java
- +1 −0 src/mesquite/pdap/CIReport/CIReport.java
- +1 −0 src/mesquite/pdap/ContrastResiduals/ContrastResiduals.java
- +1 −0 src/mesquite/pdap/DivideChars/DivideChars.java
- +1 −0 src/mesquite/pdap/ExpTransform/ExpTransform.java
- +1 −0 src/mesquite/pdap/ExpTransformChar/ExpTransformChar.java
- +1 −0 src/mesquite/pdap/FICReport/FICReport.java
- +1 −0 src/mesquite/pdap/FelsContrWithChar/FelsContrWithChar.java
- +1 −0 src/mesquite/pdap/FelsensteinContrasts/FelsensteinContrasts.java
- +1 −0 src/mesquite/pdap/FelsensteinCorrelation/FelsensteinCorrelation.java
- +1 −0 src/mesquite/pdap/GrafenTransform/GrafenTransform.java
- +1 −0 src/mesquite/pdap/GrafensRhoTransform/GrafensRhoTransform.java
- +1 −0 src/mesquite/pdap/IndepContrastsVariance/IndepContrastsVariance.java
- +293 −0 src/mesquite/pdap/InterpretPDDIST/InterpretPDDIST.java
- +1 −0 src/mesquite/pdap/InterpretPDI/InterpretPDI.java
- +1 −0 src/mesquite/pdap/Log10TransformChar/Log10TransformChar.java
- +1 −0 src/mesquite/pdap/LogTransform/LogTransform.java
- +1 −0 src/mesquite/pdap/NeeTransform/NeeTransform.java
- +282 −0 src/mesquite/pdap/NodeValueNodeHeightCorrelation/NodeValueNodeHeightCorrelation.java
- +1 −0 src/mesquite/pdap/PDAPDiagnosticChart/PDAPDiagnosticChart.java
- +263 −0 src/mesquite/pdap/PDAPReRootingSet/PDAPReRootingSet.java
- +1 −0 src/mesquite/pdap/PagelTransform/PagelTransform.java
- +1 −0 src/mesquite/pdap/RaiseStatesToPowerChar/RaiseStatesToPowerChar.java
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- +1 −0 src/mesquite/pdap/RootReconstructions/RootReconstructions.java
- +1 −0 src/mesquite/pdap/RootedRegression/RootedRegression.java
- +1 −0 src/mesquite/pdap/SPOriDiagnostics/SPOriDiagnostics.java
- +1 −0 src/mesquite/pdap/SPRegDiagnostics/SPRegDiagnostics.java
- +1 −0 src/mesquite/pdap/SPRootReconstruction/SPRootReconstruction.java
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- +1 −0 src/mesquite/pdap/ScatterDiagnostics/ScatterDiagnostics.java
- +1 −0 src/mesquite/pdap/ScatterOriDiagnostics/ScatterOriDiagnostics.java
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- +1 −0 src/mesquite/pdap/ScatterRootCIPI/ScatterRootCIPI.java
- +1 −0 src/mesquite/pdap/ScatterRootRegCIPI/ScatterRootRegCIPI.java
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- +1 −0 src/mesquite/pdap/lib/ContrastForChar.java
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- +1 −0 src/mesquite/pdap/lib/NoPolyTree.java
- +229 −0 src/mesquite/pdap/lib/PDAP2CTStatPak.java
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- +1 −0 src/mesquite/pdap/lib/PDAPFileReporter.java
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- +21 −0 src/mesquite/pdap/lib/PDAPRootReconStatPak.java
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- +455 −0 src/mesquite/pdap/lib/PDAPRootStatPak.java
- +1 −0 src/mesquite/pdap/lib/PDAPScatterAsst.java
- +1 −0 src/mesquite/pdap/lib/PDAPStatPak.java
- +1 −0 src/mesquite/pdap/lib/PDAPTreeWinAsstC.java
- +1 −0 src/mesquite/pdap/lib/ResidualsCalculator.java
- +1 −0 src/mesquite/pdap/lib/RootRegressionCalculator.java
- +1 −0 src/mesquite/pdap/lib/ScatterRegisterableAsst.java
- +68 −0 src/mesquite/pdap/lib/SignTest.java
- +1 −0 src/mesquite/pdap/lib/StatPakSource.java
- +1 −0 src/mesquite/pdap/lib/UnivariateContrastCalculator.java
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| +This is the readme for the PDAP:PDTREE package for Mesquite. |
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