CRAN Additional Issues Failures: valgrind [OLD #9]

[MichaelChirico]

Lots going wrong here...

==21934== LEAK SUMMARY:
  ==21934==    definitely lost: 448 bytes in 11 blocks
  ==21934==    indirectly lost: 0 bytes in 0 blocks
  ==21934==      possibly lost: 196,820 bytes in 6,417 blocks
  ==21934==    still reachable: 106,631,960 bytes in 24,744 blocks
  ==21934==         suppressed: 0 bytes in 0 blocks
  ==21934== Reachable blocks (those to which a pointer was found) are not shown.
  ==21934== To see them, rerun with: --leak-check=full --show-leak-kinds=all
  ==21934== 
  ==21934== For counts of detected and suppressed errors, rerun with: -v
  ==21934== ERROR SUMMARY: 1591 errors from 313 contexts (suppressed: 0 from 0)

Somewhat reproduced now following data.table approach:

https://github.com/Rdatatable/data.table/blob/master/CRAN_Release.cmd#L236-L253

gctorture2(step=100)
[1] 0
tools::testInstalledPackage('geohashTools')
Testing examples for package ‘geohashTools’
==34695== Conditional jump or move depends on uninitialised value(s)
==34695==    at 0xEB9BBF3: ???
==34695==    by 0xB208177: ???
==34695==    by 0xB208177: ???
==34695==    by 0xB208189: ???
==34695==    by 0x1FFEFE4BAF: ???
==34695==    by 0xACFBEA7: ???
==34695==  Uninitialised value was created by a heap allocation
==34695==    at 0x483577F: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)
==34695==    by 0x50EDCBC: GetNewPage (memory.c:924)
==34695==    by 0x50F251A: Rf_allocVector3 (memory.c:2738)
==34695==    by 0x522B2C1: Rf_allocVector (Rinlinedfuns.h:580)
==34695==    by 0x522B2C1: ReadBCConsts (serialize.c:2073)
==34695==    by 0x522B2C1: ReadBC1 (serialize.c:2109)
==34695==    by 0x522B33F: ReadBCConsts (serialize.c:2078)
==34695==    by 0x522B33F: ReadBC1 (serialize.c:2109)
==34695==    by 0x5226073: ReadBC (serialize.c:2120)
==34695==    by 0x5226073: ReadItem (serialize.c:1957)
==34695==    by 0x5226DE7: ReadItem (serialize.c:1865)
==34695==    by 0x522BE2F: R_Unserialize (serialize.c:2174)
==34695==    by 0x522F631: R_unserialize (serialize.c:2883)
==34695==    by 0x52300D6: do_lazyLoadDBfetch (serialize.c:3171)
==34695==    by 0x500D676: Rf_eval (eval.c:727)
==34695==    by 0x500EF25: forcePromise (eval.c:516)
==34695== 
==34695== Conditional jump or move depends on uninitialised value(s)
==34695==    at 0xEB9BBF3: ???
==34695==    by 0xBBD6817: ???
==34695==    by 0xBBD6817: ???
==34695==    by 0xBBD684D: ???
==34695==    by 0x1FFEFE31FF: ???
==34695==    by 0x9E59967: ???
==34695==  Uninitialised value was created by a heap allocation
==34695==    at 0x483577F: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)
==34695==    by 0x50EDCBC: GetNewPage (memory.c:924)
==34695==    by 0x50F251A: Rf_allocVector3 (memory.c:2738)
==34695==    by 0x502D82B: Rf_allocVector (Rinlinedfuns.h:580)
==34695==    by 0x502D82B: R_bcEncode (eval.c:7344)
==34695==    by 0x522B29C: ReadBC1 (serialize.c:2108)
==34695==    by 0x522B33F: ReadBCConsts (serialize.c:2078)
==34695==    by 0x522B33F: ReadBC1 (serialize.c:2109)
==34695==    by 0x522B33F: ReadBCConsts (serialize.c:2078)
==34695==    by 0x522B33F: ReadBC1 (serialize.c:2109)
==34695==    by 0x5226073: ReadBC (serialize.c:2120)
==34695==    by 0x5226073: ReadItem (serialize.c:1957)
==34695==    by 0x5226DE7: ReadItem (serialize.c:1865)
==34695==    by 0x5226DB6: ReadItem (serialize.c:1863)
==34695==    by 0x5226DE7: ReadItem (serialize.c:1865)
==34695==    by 0x5226DE7: ReadItem (serialize.c:1865)
==34695== 
==34695== Conditional jump or move depends on uninitialised value(s)
==34695==    at 0xEB9BBF3: ???
==34695==    by 0xA778C37: ???
==34695==    by 0xA778C37: ???
==34695==    by 0xA778C72: ???
==34695==    by 0x1FFEFE4BAF: ???
==34695==    by 0xAE2E737: ???
==34695==  Uninitialised value was created by a heap allocation
==34695==    at 0x483577F: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)
==34695==    by 0x50EDCBC: GetNewPage (memory.c:924)
==34695==    by 0x50F251A: Rf_allocVector3 (memory.c:2738)
==34695==    by 0x5225EBF: Rf_allocVector (Rinlinedfuns.h:580)
==34695==    by 0x5225EBF: ReadItem (serialize.c:1938)
==34695==    by 0x5226DB6: ReadItem (serialize.c:1863)
==34695==    by 0x5227FE6: ReadItem (serialize.c:2008)
==34695==    by 0x522BE2F: R_Unserialize (serialize.c:2174)
==34695==    by 0x522F631: R_unserialize (serialize.c:2883)
==34695==    by 0x52300D6: do_lazyLoadDBfetch (serialize.c:3171)
==34695==    by 0x4FC74E1: bcEval (eval.c:6775)
==34695==    by 0x500C80F: Rf_eval (eval.c:620)
==34695==    by 0x5013902: R_execClosure (eval.c:1780)
==34695== 
==34695== Conditional jump or move depends on uninitialised value(s)
==34695==    at 0xEB9BC24: ???
==34695==    by 0x9EAC7D7: ???
==34695==    by 0x9EAC7D7: ???
==34695==    by 0x9EAC7EC: ???
==34695==    by 0x1FFEFF9713: ???
==34695==    by 0xBFB845F: ???
==34695==  Uninitialised value was created by a heap allocation
==34695==    at 0x483577F: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)
==34695==    by 0x50EDCBC: GetNewPage (memory.c:924)
==34695==    by 0x50F251A: Rf_allocVector3 (memory.c:2738)
==34695==    by 0x4D096DE: Rf_allocVector (Rinlinedfuns.h:580)
==34695==    by 0x4D096DE: new_compact_intseq (altclasses.c:324)
==34695==    by 0x521910C: do_seq_along (seq.c:1036)
==34695==    by 0x500D676: Rf_eval (eval.c:727)
==34695==    by 0x502787A: do_for (eval.c:2177)
==34695==    by 0x500D277: Rf_eval (eval.c:695)
==34695==    by 0x5018C22: do_begin (eval.c:2383)
==34695==    by 0x500D277: Rf_eval (eval.c:695)
==34695==    by 0x500D277: Rf_eval (eval.c:695)
==34695==    by 0x5018C22: do_begin (eval.c:2383)
==34695== 
q()
==34695== 
==34695== HEAP SUMMARY:
==34695==     in use at exit: 38,767,318 bytes in 7,500 blocks
==34695==   total heap usage: 25,613 allocs, 18,113 frees, 72,181,056 bytes allocated
==34695== 
==34695== 14 bytes in 1 blocks are definitely lost in loss record 22 of 1,200
==34695==    at 0x483577F: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)
==34695==    by 0x6B72238: xmalloc (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B564E4: rl_complete_internal (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B4C275: _rl_dispatch_subseq (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B4C82C: readline_internal_char (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B670F4: rl_callback_read_char (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x5416008: Rstd_ReadConsole (sys-std.c:1073)
==34695==    by 0x50B63F6: Rf_ReplIteration (main.c:208)
==34695==    by 0x50B6E78: R_ReplConsole (main.c:310)
==34695==    by 0x50B6F28: run_Rmainloop (main.c:1108)
==34695==    by 0x10907A: main (Rmain.c:29)
==34695== 
==34695== 14 bytes in 1 blocks are definitely lost in loss record 23 of 1,200
==34695==    at 0x483577F: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)
==34695==    by 0x6B72238: xmalloc (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B63EF1: rl_copy_text (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B5654A: rl_complete_internal (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B4C275: _rl_dispatch_subseq (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B4C82C: readline_internal_char (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B670F4: rl_callback_read_char (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x5416008: Rstd_ReadConsole (sys-std.c:1073)
==34695==    by 0x50B63F6: Rf_ReplIteration (main.c:208)
==34695==    by 0x50B6E78: R_ReplConsole (main.c:310)
==34695==    by 0x50B6F28: run_Rmainloop (main.c:1108)
==34695==    by 0x10907A: main (Rmain.c:29)
==34695== 
==34695== 192 (88 direct, 104 indirect) bytes in 1 blocks are definitely lost in loss record 93 of 1,200
==34695==    at 0x483577F: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)
==34695==    by 0x6B72277: xrealloc (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B56247: rl_completion_matches (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x5412A22: R_custom_completion (sys-std.c:865)
==34695==    by 0x6B56386: ??? (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B5656E: rl_complete_internal (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B4C275: _rl_dispatch_subseq (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B4C82C: readline_internal_char (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x6B670F4: rl_callback_read_char (in /lib/x86_64-linux-gnu/libreadline.so.8.0)
==34695==    by 0x5416008: Rstd_ReadConsole (sys-std.c:1073)
==34695==    by 0x50B63F6: Rf_ReplIteration (main.c:208)
==34695==    by 0x50B6E78: R_ReplConsole (main.c:310)
==34695== 
==34695== LEAK SUMMARY:
==34695==    definitely lost: 116 bytes in 3 blocks
==34695==    indirectly lost: 104 bytes in 4 blocks
==34695==      possibly lost: 0 bytes in 0 blocks
==34695==    still reachable: 38,767,098 bytes in 7,493 blocks
==34695==                       of which reachable via heuristic:
==34695==                         newarray           : 4,264 bytes in 1 blocks
==34695==         suppressed: 0 bytes in 0 blocks
==34695== Reachable blocks (those to which a pointer was found) are not shown.
==34695== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==34695== 
==34695== For lists of detected and suppressed errors, rerun with: -s
==34695== ERROR SUMMARY: 7 errors from 7 contexts (suppressed: 0 from 0)

But these issues all seem related to base??

Closing pending new CRAN results