You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Deals with many, but not all cases, as far as I can tell from the code (e.g. multiple rates in a single file, non-zero time between sweeps for abf < 1)
If it goes well, add some examples to the guide showing how to use pyabf with Myokit (fitting!)
Deprecate abf library
Only issue would be the file viewer, but maybe that could be a separate project at some stage?
MichaelClerx
changed the title
Consider replacing ABF/ATF support with code based on pyABF
Consider replacing ABF/ATF support with code based on pyABF or Neo
Sep 10, 2019
MichaelClerx
changed the title
Consider replacing ABF/ATF support with code based on pyABF or Neo
Split off ABF/ATF support, create new project or join pyABF or Neo
Jan 6, 2020
These formats are quite stable, and Myokit's reader still handles the types of files I've used better than the others (Last time I checked, which was a while ago). So leaving these in. Can revisit this idea if they become a time sink.
https://github.com/swharden/pyABF
Looks like a very nice project
Also: https://github.com/NeuralEnsemble/python-neo
The text was updated successfully, but these errors were encountered: