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Update README.md

Resolved references.
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AIgen committed Sep 7, 2017
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This will create a sample train and test dataset, on which
you can train and test Bonsai and ProtoNN algorithms.
For detailed instructions, see [Bonsai Readme](README_BONSAI_OSS.md) and [ProtoNN Readme](README_PROTONN_OSS.ipynb).
For detailed instructions, see [Bonsai Readme](docs/README_BONSAI_OSS.md) and [ProtoNN Readme](docs/README_PROTONN_OSS.ipynb).
### Makefile flags
You could change the behavior of the code by setting these flags in `config.mk` and rebuilding with `make -Bj`. All these flags can be set for both ProtoNN and Bonsai.

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