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A Python library for reading and manipulating genetic data.
Python version of Factored Spectrally Transformed Linear Mixed Models
Command-line client for the Microsoft Genomics service
Contig Ploidy and Allele Dosage Estimation
A Java API for high-throughput sequencing data (HTS) formats.
A set of tools for benchmarking or evaluating GWAS algorithms. A detailed description can be found in C. Widmer et al., Scientific Reports 2014.
Liability Estimation for Case-Control Studies
Warped Linear Mixed Models
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
LIMIX is a flexible and efficient linear mixed model library with interfaces to Python and other scripting languages.